vOTU vOTU-072265

vOTU: vOTU-072265

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-072265
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00033 → vGENUS-03162 → vSUBGEN-38594 → vOTU-072265
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0021345
Biosample ID	SAMEA4765814
Genome length (bp)	34,492 bps
CheckV completeness	98.77% (High-quality)
CDS count	42
CDS density	93.90%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	70	Host agreement	91.43
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii_E	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0021345_1	K10062	94.9	5e-28	COLEC12; collectin sub-family member 12	N/A
PHROG	UHGV-0021345_1	phrog_5073	117.7	9.3e-35	tail fiber protein	tail
eggNOG-mapper	UHGV-0021345_1	411483.FAEPRAA2165_00757	167.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0021345_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0021345_1	PF10651	N/A	N/A	N/A	N/A
Pfam	UHGV-0021345_2	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix
COG	UHGV-0021345_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
PHROG	UHGV-0021345_4	phrog_3558	283.4	0	tail protein	tail
UniRef90	UHGV-0021345_4	UniRef90_UPI001C01D15B	661.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0021345_4	357276.EL88_12830	271.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0021345_4	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0021345_4	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0021345_4	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0021345_4	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_5	phrog_6900	245.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0021345_5	748224.HMPREF9436_00699	470.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0021345_5	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021345_6	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_7	phrog_1526	71.3	1.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0021345_7	936375.HMPREF1152_0686	73.9	4.35e-16	N/A	N/A
PHROG	UHGV-0021345_8	phrog_117	158.8	0	major tail protein	tail
UniRef90	UHGV-0021345_8	UniRef90_A0A3E2U249	260.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0021345_8	748224.HMPREF9436_00696	258.0	0	domain, Protein	N/A
COG	UHGV-0021345_8	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021345_8	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_9	phrog_123	56.8	4.4e-16	tail terminator	connector
eggNOG-mapper	UHGV-0021345_9	748224.HMPREF9436_00695	165.0	0	N/A	N/A
structural_annotation	UHGV-0021345_9	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_10	phrog_387	68.0	1.1e-19	neck protein	connector
eggNOG-mapper	UHGV-0021345_10	908337.HMPREF9257_0534	74.3	1.24e-16	N/A	N/A
PHROG	UHGV-0021345_11	phrog_501	81.1	1.2e-23	head closure Hc1	connector
UniRef90	UHGV-0021345_11	UniRef90_A0A139QHM6	131.0	1.48e-37	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0021345_11	748224.HMPREF9436_00693	194.0	0	N/A	N/A
structural_annotation	UHGV-0021345_11	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_12	phrog_137	67.6	1.5e-19	head-tail adaptor Ad1	connector
UniRef90	UHGV-0021345_12	UniRef90_E2ZGA8	179.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0021345_12	762211.BSTEL_0628	54.3	0.000000129	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0021345_12	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_13	phrog_10	137.3	1.3e-40	major head protein	head and packaging
UniRef90	UHGV-0021345_13	UniRef90_A0A1Y4TJU9	451.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0021345_13	748224.HMPREF9436_00690	444.0	0	Phage capsid family	N/A
Pfam	UHGV-0021345_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0021345_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0021345_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0021345_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_14	phrog_194	70.6	2.8e-20	head scaffolding protein	head and packaging
UniRef90	UHGV-0021345_14	UniRef90_D4K444	229.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0021345_14	748224.HMPREF9436_03336	203.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0021345_14	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0021345_14	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021345_15	PF06442,MF_01194,NF000331,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_16	phrog_193	119.0	5.3e-35	head maturation protease	head and packaging
UniRef90	UHGV-0021345_16	UniRef90_A0A6N8H118	342.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0021345_16	748224.HMPREF9436_01469	407.0	0	N/A	N/A
Pfam	UHGV-0021345_16	PF21814	N/A	N/A	N/A	DUF6883
COG	UHGV-0021345_16	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0021345_16	PF11429	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_17	phrog_104	221.1	0	portal protein	head and packaging
UniRef90	UHGV-0021345_17	UniRef90_A0A3E2U200	746.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0021345_17	748224.HMPREF9436_01468	739.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0021345_17	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_18	phrog_9	176.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0021345_18	UniRef90_UPI001F1A3C47	620.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0021345_18	748224.HMPREF9436_01467	775.0	0	phage terminase, large subunit	N/A
Pfam	UHGV-0021345_18	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0021345_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0021345_18	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021345_19	UniRef90_R6GFM0	89.7	1.07e-21	Conserved domain protein	N/A
structural_annotation	UHGV-0021345_19	PF19962	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_20	phrog_338	51.7	0.000000000000011	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021345_20	UniRef90_UPI0015F33F36	206.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0021345_20	748224.HMPREF9436_01465	206.0	0	N/A	N/A
PHROG	UHGV-0021345_21	phrog_36	79.0	6.7e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0021345_21	UniRef90_A0A6N7TNN9	154.0	1.4013e-45	N/A	N/A
COG	UHGV-0021345_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0021345_21	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0021345_22	K02314	235.8	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0021345_22	phrog_19	209.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021345_22	UniRef90_A0A3E2U3E3	772.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0021345_22	411471.SUBVAR_05838	358.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0021345_22	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0021345_22	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0021345_22	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0021345_22	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_23	phrog_678	65.6	8.9e-19	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021345_23	UniRef90_A0A3E2U1Y3	362.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0021345_23	1232446.BAIE02000002_gene816	62.0	0.0000000145	N/A	N/A
Pfam	UHGV-0021345_23	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0021345_23	PF05584,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0021345_24	K03111	135.9	4.5e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0021345_24	phrog_44	136.4	1.8e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021345_24	UniRef90_A0A3E2U1Y5	298.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0021345_24	748224.HMPREF9436_00638	212.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0021345_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0021345_24	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0021345_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0021345_24	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0021345_24	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_25	phrog_7566	72.8	3.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0021345_25	411471.SUBVAR_05830	101.0	2.93e-26	N/A	N/A
PHROG	UHGV-0021345_28	phrog_72	48.8	0.00000000000012	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0021345_28	411471.SUBVAR_05829	136.0	2.65e-38	N/A	N/A
structural_annotation	UHGV-0021345_28	PF05772,NF007281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021345_29	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021345_30	NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0021345_34	phrog_37789	57.3	1.7e-16	N/A	unknown function
Pfam	UHGV-0021345_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0021345_35	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
UniRef90	UHGV-0021345_36	UniRef90_A0A3E2WV70	48.5	0.00000299	Carboxypeptidase	N/A
eggNOG-mapper	UHGV-0021345_36	1235802.C823_04730	54.3	0.0000000026	N/A	N/A
UniRef90	UHGV-0021345_37	UniRef90_A0A2A7BGV0	92.0	2.36e-23	HTH_8 domain-containing protein	N/A
eggNOG-mapper	UHGV-0021345_37	272563.CD630_29490	51.6	0.0000000615	N/A	N/A
Pfam	UHGV-0021345_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0021345_37	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0021345_38	K01356	142.7	3.20057e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0021345_38	phrog_4	123.7	1.8e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0021345_38	UniRef90_A0A564U5Z2	273.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0021345_38	718252.FP2_06870	273.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0021345_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0021345_38	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0021345_38	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0021345_38	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0021345_39	K10421	40.7	0.000000000012	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0021345_39	phrog_1847	359.8	0	N/A	unknown function
UniRef90	UHGV-0021345_39	UniRef90_D1PLA1	535.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-0021345_39	411471.SUBVAR_05139	535.0	0	T5orf172	N/A
Pfam	UHGV-0021345_39	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0021345_39	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0021345_39	PF13250,NF041454	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021345_40	UniRef90_A0A843JB96	456.0	0	Virulence RhuM family protein	N/A
eggNOG-mapper	UHGV-0021345_40	1280681.AUJZ01000019_gene1748	457.0	0	Virulence protein RhuM family	N/A
Pfam	UHGV-0021345_40	PF13310	N/A	N/A	Virulence protein RhuM family	Virulence_RhuM
COG	UHGV-0021345_40	COG3943	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021345_40	PF13310,TIGR02681,COG3943	N/A	N/A	N/A	N/A
KOfam	UHGV-0021345_41	K14059	151.9	7.00649e-45	int; integrase	N/A
PHROG	UHGV-0021345_41	phrog_1	139.2	3.59994e-41	integrase	integration and excision
UniRef90	UHGV-0021345_41	UniRef90_UPI001C3A4BBE	437.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0021345_41	693746.OBV_25530	264.0	0	Phage integrase family	N/A
Pfam	UHGV-0021345_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0021345_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0021345_41	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0021345_42	K03664	184.5	0	smpB; SsrA-binding protein	N/A
PHROG	UHGV-0021345_42	phrog_6791	167.8	0	N/A	unknown function
UniRef90	UHGV-0021345_42	UniRef90_D4K398	243.0	0	SsrA-binding protein	N/A
eggNOG-mapper	UHGV-0021345_42	411483.FAEPRAA2165_00936	253.0	0	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA	N/A
Pfam	UHGV-0021345_42	PF01668	N/A	N/A	SmpB protein	SmpB
NCBIFam	UHGV-0021345_42	NF003843.0	N/A	N/A	SsrA-binding protein SmpB	N/A
COG	UHGV-0021345_42	COG0691	N/A	N/A	tmRNA-binding protein	N/A
HAMAP	UHGV-0021345_42	MF_00023	N/A	N/A	SsrA-binding protein [smpB]	N/A
structural_annotation	UHGV-0021345_42	PF01668,MF_00023,NF003843,COG0691	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0021345	Yes	34,492	57	99	1
UHGV-0017666	No	33,774	57	97	1
UHGV-0030411	No	24,306	59	69	1
UHGV-0040119	No	24,068	59	69	1
UHGV-0018994	No	22,482	59	64	1
UHGV-0014603	No	18,307	59	52	1
UHGV-0138505	No	10,072	60	29	1