vOTU vOTU-072272

vOTU: vOTU-072272

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-072272
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00152 → vGENUS-00084 → vSUBGEN-21599 → vOTU-072272
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia → Roseburia inulinivorans
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1358521
Biosample ID	N/A
Genome length (bp)	39,256 bps
CheckV completeness	93.14% (High-quality)
CDS count	72
CDS density	90.99%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia → Roseburia inulinivorans	Total connections	2272	Host agreement	91.29
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	51	Host agreement	96.08

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1358521_4	UniRef90_A0A412KFA7	145.0	6.16571e-44	ABC transporter ATP-binding protein	N/A
KOfam	UHGV-1358521_5	K07493	506.7	0	K07493; putative transposase	N/A
PHROG	UHGV-1358521_5	phrog_2331	525.8	0	transposase	integration and excision
UniRef90	UHGV-1358521_5	UniRef90_A0A3R6TSX1	803.0	0	Mutator family transposase	N/A
eggNOG-mapper	UHGV-1358521_5	622312.ROSEINA2194_00592	827.0	0	PFAM transposase, mutator	N/A
Pfam	UHGV-1358521_5	PF00872	N/A	N/A	Transposase, Mutator family	Transposase_mut
NCBIFam	UHGV-1358521_5	NF033543.1	N/A	N/A	IS256 family transposase	N/A
COG	UHGV-1358521_5	COG3328	N/A	N/A	Transposase (or an inactivated derivative)	N/A
structural_annotation	UHGV-1358521_5	PF00872,NF033543,COG3328	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_8	phrog_31631	74.1	1.1e-21	N/A	unknown function
PHROG	UHGV-1358521_11	phrog_33130	86.7	1.3e-25	N/A	unknown function
UniRef90	UHGV-1358521_11	UniRef90_A0A3B9CD52	120.0	4.51e-34	S1-like domain-containing protein	N/A
structural_annotation	UHGV-1358521_11	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-1358521_12	K06909	215.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1358521_12	phrog_5653	99.6	1.8e-29	terminase large subunit	head and packaging
UniRef90	UHGV-1358521_12	UniRef90_A0A3R5WSV0	1095.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1358521_12	33035.JPJF01000106_gene3136	313.0	0	Terminase small subunit	N/A
Pfam	UHGV-1358521_12	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-1358521_12	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1358521_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1358521_12	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_14	phrog_533	249.8	0	portal protein	head and packaging
UniRef90	UHGV-1358521_14	UniRef90_A0A3R5WTT1	935.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1358521_14	476272.RUMHYD_01758	327.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1358521_14	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_16	phrog_556	86.6	2.2e-25	minor head protein	head and packaging
UniRef90	UHGV-1358521_16	UniRef90_UPI000E4A8F9F	117.0	1.81e-31	minor capsid protein	N/A
eggNOG-mapper	UHGV-1358521_16	1449050.JNLE01000003_gene3886	52.4	0.000000686	N/A	N/A
Pfam	UHGV-1358521_16	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
PHROG	UHGV-1358521_17	phrog_581	209.9	0	minor head protein	head and packaging
UniRef90	UHGV-1358521_17	UniRef90_A0A6L5YIK0	570.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1358521_17	645991.Sgly_0338	163.0	1.24996e-41	N/A	N/A
Pfam	UHGV-1358521_17	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1358521_17	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358521_17	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_18	phrog_35094	101.3	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-1358521_18	547228.M4ZRU5_9CAUD	82.4	1.95e-19	N/A	N/A
eggNOG-mapper	UHGV-1358521_19	1235790.C805_00057	62.4	0.00000000000402	N/A	N/A
structural_annotation	UHGV-1358521_19	PF04545,MF_00674,NF001067,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1358521_20	658655.HMPREF0988_00919	84.3	1.19e-18	N/A	N/A
eggNOG-mapper	UHGV-1358521_21	658655.HMPREF0988_00918	87.8	4.51e-22	N/A	N/A
PHROG	UHGV-1358521_22	phrog_16490	216.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1358521_22	397290.C810_01328	201.0	0	N/A	N/A
PHROG	UHGV-1358521_23	phrog_20016	216.5	0	N/A	unknown function
UniRef90	UHGV-1358521_23	UniRef90_A0A285PT46	155.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1358521_23	397290.C810_05214	221.0	0	N/A	N/A
structural_annotation	UHGV-1358521_23	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1358521_24	658655.HMPREF0988_00915	120.0	6.65e-31	N/A	N/A
PHROG	UHGV-1358521_25	phrog_1233	45.8	0.00000000000098	N/A	unknown function
eggNOG-mapper	UHGV-1358521_25	658655.HMPREF0988_00914	102.0	5.56e-27	N/A	N/A
structural_annotation	UHGV-1358521_25	PF20352,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_27	phrog_194	56.0	8.6e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-1358521_27	UniRef90_UPI000E538A87	112.0	1.87e-27	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1358521_27	476272.RUMHYD_01775	108.0	7.92e-27	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1358521_27	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1358521_28	phrog_544	133.5	1.5e-39	major head protein	head and packaging
UniRef90	UHGV-1358521_28	UniRef90_A0A395X7A1	368.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1358521_28	476272.RUMHYD_01776	329.0	0	N/A	N/A
structural_annotation	UHGV-1358521_28	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_29	phrog_541	90.5	1.4e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-1358521_29	476272.RUMHYD_01778	85.5	6.28e-19	N/A	N/A
PHROG	UHGV-1358521_30	phrog_3366	91.6	7e-27	N/A	unknown function
eggNOG-mapper	UHGV-1358521_30	1235790.C805_00078	158.0	0	N/A	N/A
structural_annotation	UHGV-1358521_30	PF20536,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358521_31	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_32	phrog_3099	83.4	2.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-1358521_32	1235790.C805_00082	57.8	0.0000000482	N/A	N/A
structural_annotation	UHGV-1358521_32	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1358521_33	UniRef90_A0A412KF72	288.0	0	RNA polymerase subunit sigma	N/A
structural_annotation	UHGV-1358521_33	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_34	phrog_706	124.9	4.9e-37	N/A	unknown function
UniRef90	UHGV-1358521_34	UniRef90_C7GBZ7	259.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1358521_34	1235790.C805_00084	134.0	9.1e-37	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1358521_34	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1358521_34	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_35	phrog_1535	101.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1358521_35	1280689.AUJC01000003_gene976	139.0	3.98e-31	phage tail tape measure protein	N/A
COG	UHGV-1358521_35	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1358521_36	phrog_1194	49.8	0.000000000000049	N/A	unknown function
eggNOG-mapper	UHGV-1358521_36	1120746.CCNL01000014_gene2106	105.0	1.23e-27	N/A	N/A
structural_annotation	UHGV-1358521_36	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_37	phrog_13879	286.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1358521_37	1120746.CCNL01000014_gene2107	356.0	0	N/A	N/A
structural_annotation	UHGV-1358521_37	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_39	phrog_18725	87.1	5.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-1358521_39	1226322.HMPREF1545_00062	85.1	9.71e-19	N/A	N/A
PHROG	UHGV-1358521_41	phrog_4105	92.1	4.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-1358521_41	411459.RUMOBE_00911	154.0	0	N/A	N/A
PHROG	UHGV-1358521_42	phrog_1129	89.9	1.4e-26	holin	lysis
UniRef90	UHGV-1358521_42	UniRef90_A0A412KF76	171.0	0	Holin	N/A
eggNOG-mapper	UHGV-1358521_42	1256908.HMPREF0373_00463	159.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1358521_42	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1358521_42	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1358521_43	K01448	105.8	4.5e-31	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1358521_43	phrog_435	182.9	0	endolysin	lysis
UniRef90	UHGV-1358521_43	UniRef90_A0A1Q6KUK5	449.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-1358521_43	33035.JPJF01000090_gene96	184.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-1358521_43	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1358521_43	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-1358521_43	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1358521_43	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-1358521_44	K06400	227.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1358521_44	phrog_95	251.6	0	integrase	integration and excision
UniRef90	UHGV-1358521_44	UniRef90_A0A1Q6KI87	875.0	0	Resolvase/invertase-type recombinase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-1358521_44	180332.JTGN01000010_gene4488	185.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1358521_44	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1358521_44	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1358521_44	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1358521_44	PF00239,PF13408,PF14235,NF041201,COG1961,COG1579	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_45	phrog_8545	57.9	1.7e-16	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1358521_45	UniRef90_A0A0V8QJ55	147.0	2.01002e-41	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1358521_45	1304866.K413DRAFT_0836	134.0	4.59e-37	tRNA_anti-like	N/A
Pfam	UHGV-1358521_45	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-1358521_45	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-1358521_47	K18830	69.2	7.8e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1358521_47	phrog_2967	63.3	3.7e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1358521_47	UniRef90_A0A1Q6KIG7	221.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1358521_47	1235797.C816_03553	111.0	2.86e-29	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-1358521_47	retron_type_VI_hth_cluster2_1	48.6	0.00000000000015	N/A	Retron
Pfam	UHGV-1358521_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1358521_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1358521_47	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358521_50	PF11127	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358521_52	PF15513,NF007469	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_54	phrog_14970	216.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1358521_54	1235798.C817_00385	184.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1358521_54	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1358521_54	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1358521_54	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_55	phrog_398	215.1	0	N/A	unknown function
UniRef90	UHGV-1358521_55	UniRef90_A0A4P8IGL9	279.0	0	N/A	N/A
eggNOG-mapper	UHGV-1358521_55	33035.JPJF01000122_gene2462	270.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1358521_55	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1358521_55	PF16784	N/A	N/A	N/A	N/A
KOfam	UHGV-1358521_57	K01160	42.6	0.000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1358521_57	phrog_1682	74.6	1.4e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1358521_57	UniRef90_A0A412FH46	251.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1358521_57	1235790.C805_00029	164.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-1358521_57	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1358521_57	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1358521_57	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_58	phrog_19658	45.3	0.00000000000089	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1358521_58	1071400.LBUCD034_0926	114.0	2.9e-27	DnaD domain protein	N/A
COG	UHGV-1358521_58	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1358521_58	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-1358521_59	K02315	144.2	9.79508e-43	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1358521_59	phrog_50	141.0	9.00054e-42	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1358521_59	UniRef90_A0A1Q6KIH9	414.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1358521_59	742733.HMPREF9469_01844	231.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1358521_59	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1358521_59	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1358521_59	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_64	phrog_8684	74.3	1.5e-21	N/A	unknown function
UniRef90	UHGV-1358521_64	UniRef90_A0A6L6XDP0	189.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1358521_64	742735.HMPREF9467_00920	73.9	0.0000000000000065	YopX protein	N/A
Pfam	UHGV-1358521_64	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1358521_64	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358521_65	PF14282	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_66	phrog_599	49.7	0.000000000000079	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1358521_66	UniRef90_A0A412KFB8	179.0	0	Restriction alleviation protein, Lar family	N/A
eggNOG-mapper	UHGV-1358521_66	1235790.C805_00069	83.2	4.82e-20	Restriction alleviation protein Lar	N/A
Pfam	UHGV-1358521_66	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1358521_66	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1358521_66	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_67	phrog_20593	69.4	3.4e-20	N/A	unknown function
PHROG	UHGV-1358521_68	phrog_874	182.5	0	N/A	unknown function
UniRef90	UHGV-1358521_68	UniRef90_A0A6N7W7Q7	192.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1358521_68	411468.CLOSCI_00298	185.0	0	N/A	N/A
structural_annotation	UHGV-1358521_68	PF04266,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1358521_69	PF17457	N/A	N/A	N/A	N/A
PHROG	UHGV-1358521_72	phrog_13489	43.0	0.0000000000078	N/A	unknown function
eggNOG-mapper	UHGV-1358521_72	1158602.I590_00660	50.8	0.00000043	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1358521	Yes	39,256	38	93	1