vOTU vOTU-072529

vOTU: vOTU-072529

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-072529
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00751 → vGENUS-00991 → vSUBGEN-26542 → vOTU-072529
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019675
Biosample ID	N/A
Genome length (bp)	39,447 bps
CheckV completeness	99.90% (High-quality)
CDS count	53
CDS density	95.54%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	31	Host agreement	87.1
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0019675_3	phrog_511	237.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0019675_3	1410650.JHWL01000003_gene2827	353.0	0	N/A	N/A
structural_annotation	UHGV-0019675_3	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0019675_4	phrog_12105	99.4	2.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-0019675_4	1519439.JPJG01000060_gene1891	68.6	0.000000000000405	N/A	N/A
PHROG	UHGV-0019675_6	phrog_1357	221.3	0	major head protein	head and packaging
UniRef90	UHGV-0019675_6	UniRef90_A0A3C0NPN1	554.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0019675_6	1410650.JHWL01000003_gene2830	261.0	0	N/A	N/A
Pfam	UHGV-0019675_6	PF19821	N/A	N/A	Phage capsid protein	Phage_capsid_2
NCBIFam	UHGV-0019675_6	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0019675_6	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0019675_7	phrog_13908	176.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0019675_7	748224.HMPREF9436_01398	59.7	0.000000487	Cysteine protease Prp	N/A
COG	UHGV-0019675_7	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0019675_8	phrog_22978	587.8	0	N/A	unknown function
UniRef90	UHGV-0019675_8	UniRef90_UPI001CF7F562	384.0	0	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0019675_8	1410650.JHWL01000003_gene2814	364.0	0	N/A	N/A
Pfam	UHGV-0019675_8	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
Pfam	UHGV-0019675_8	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-0019675_9	1410650.JHWL01000003_gene2815	125.0	1.25e-29	N/A	N/A
KOfam	UHGV-0019675_10	K07584	57.1	3.8e-16	N/A	N/A
PHROG	UHGV-0019675_10	phrog_4478	52.2	0.0000000000000086	peptidase	other
UniRef90	UHGV-0019675_10	UniRef90_A0A2N6APL4	50.4	0.00000946	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0019675_10	1114972.AUAW01000001_gene1462	48.5	0.00000794	Cysteine protease Prp	N/A
Pfam	UHGV-0019675_10	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0019675_10	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019675_10	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0019675_11	phrog_156	277.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0019675_11	1410650.JHWL01000003_gene2833	491.0	0	N/A	N/A
structural_annotation	UHGV-0019675_11	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0019675_12	K06909	142.8	2.79979e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0019675_12	phrog_979	143.8	3.78351e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0019675_12	UniRef90_A0A3C0NMI6	684.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0019675_12	1410650.JHWL01000003_gene2834	579.0	0	N/A	N/A
Pfam	UHGV-0019675_12	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0019675_12	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0019675_12	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0019675_13	phrog_1206	41.1	0.0000000000064	terminase small subunit	head and packaging
UniRef90	UHGV-0019675_13	UniRef90_A0A3C0NNN3	71.2	0.00000000000258	HTH psq-type domain-containing protein	N/A
PHROG	UHGV-0019675_16	phrog_3584	165.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0019675_16	1226322.HMPREF1545_03841	253.0	0	N/A	N/A
structural_annotation	UHGV-0019675_16	PF01446,NF041486	N/A	N/A	N/A	N/A
Pfam	UHGV-0019675_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0019675_18	K19779	41.7	0.000000000017	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0019675_18	phrog_599	51.0	0.000000000000034	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0019675_18	56780.SYN_03368	46.2	0.00000612	translation initiation factor activity	N/A
Pfam	UHGV-0019675_18	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0019675_18	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0019675_18	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
COG	UHGV-0019675_18	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-0019675_18	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0019675_20	phrog_3136	128.4	2.7e-38	N/A	unknown function
UniRef90	UHGV-0019675_20	UniRef90_A0A3D0HBD2	116.0	1.62e-29	ASCH domain-containing protein	N/A
COG	UHGV-0019675_20	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0019675_20	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0019675_24	K00558	155.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0019675_24	phrog_363	234.0	0	DNA methyltransferase	other
UniRef90	UHGV-0019675_24	UniRef90_G4KRB8	330.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0019675_24	693746.OBV_01900	330.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0019675_24	MTase_II_00058	120.0	2.6e-35	Type II methyltransferase	RM
Pfam	UHGV-0019675_24	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0019675_24	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0019675_24	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0019675_24	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0019675_25	K00390	104.7	9.8e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0019675_25	phrog_424	124.7	6.5e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0019675_25	UniRef90_A0A1Y4LU27	356.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-0019675_25	411902.CLOBOL_06768	350.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-0019675_25	BrxP_00001	66.5	6e-20	BrxP	BREX
Pfam	UHGV-0019675_25	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0019675_25	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0019675_25	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0019675_26	phrog_24518	57.7	2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0019675_26	1519439.JPJG01000077_gene922	67.0	0.0000000000624	N/A	N/A
PHROG	UHGV-0019675_27	phrog_824	153.3	0	N/A	unknown function
UniRef90	UHGV-0019675_27	UniRef90_A0A6N8GXS9	176.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0019675_27	665956.HMPREF1032_00132	153.0	1.4013e-45	VRR_NUC	N/A
Pfam	UHGV-0019675_27	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0019675_38	K22300	40.2	0.00000000006	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0019675_38	UniRef90_A0A810Q5N3	126.0	8.11e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0019675_38	748224.HMPREF9436_01444	90.9	1.69e-21	N/A	N/A
Pfam	UHGV-0019675_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0019675_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0019675_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0019675_40	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0019675_41	K14059	133.8	2.1e-39	int; integrase	N/A
PHROG	UHGV-0019675_41	phrog_1	136.2	2.69999e-40	integrase	integration and excision
UniRef90	UHGV-0019675_41	UniRef90_A0A2Z4QB94	273.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0019675_41	1514668.JOOA01000001_gene242	146.0	6.79e-38	Phage integrase family	N/A
Pfam	UHGV-0019675_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0019675_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0019675_41	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019675_42	1408437.JNJN01000043_gene801	66.6	0.0000000000308	N/A	N/A
structural_annotation	UHGV-0019675_45	PF16509,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0019675_46	phrog_199	66.7	2.7e-19	holin	lysis
UniRef90	UHGV-0019675_46	UniRef90_A0A3C0NPD5	181.0	0	Holin	N/A
eggNOG-mapper	UHGV-0019675_46	1121344.JHZO01000003_gene684	148.0	1.33123e-43	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0019675_46	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0019675_46	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0019675_46	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0019675_46	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0019675_47	phrog_14030	160.1	0	N/A	unknown function
UniRef90	UHGV-0019675_47	UniRef90_A0A316NTC6	192.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0019675_47	1121115.AXVN01000051_gene809	173.0	0	NLP P60 protein	N/A
Pfam	UHGV-0019675_47	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0019675_47	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0019675_47	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0019675_47	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0019675_49	phrog_27545	86.9	2.5e-25	N/A	unknown function
UniRef90	UHGV-0019675_49	UniRef90_R6ELD6	72.4	0.000000000000188	Glycosyl hydrolase family 18 family protein	N/A
eggNOG-mapper	UHGV-0019675_49	1122971.BAME01000151_gene6566	106.0	1.41e-26	N/A	N/A
structural_annotation	UHGV-0019675_52	PF07210,PF01404,TIGR03000,NF038128	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0019675_53	1408422.JHYF01000026_gene3527	93.2	8.4e-21	nuclear chromosome segregation	N/A
COG	UHGV-0019675_53	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0019675	Yes	39,447	56	100	1