vOTU vOTU-072590

vOTU: vOTU-072590

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-072590
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-07327 → vGENUS-20137 → vSUBGEN-39464 → vOTU-072590
Host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → UBA1234 → HGM13618 → HGM13618 sp900753975
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0033971
Biosample ID	N/A
Genome length (bp)	30,404 bps
CheckV completeness	98.00% (High-quality)
CDS count	46
CDS density	91.88%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → UBA1234 → HGM13618 → HGM13618 sp900753975	Total connections	17	Host agreement	82.35
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → UBA1234 → HGM13618 → HGM13618 sp900753975	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0033971_1	K01869	1197.5	0	LARS, leuS; leucyl-tRNA synthetase [EC:6.1.1.4]	N/A
PHROG	UHGV-0033971_1	phrog_12710	342.5	0	N/A	unknown function
UniRef90	UHGV-0033971_1	UniRef90_A0A7C6LNF7	1211.0	0	Leucine--tRNA ligase	N/A
eggNOG-mapper	UHGV-0033971_1	1304284.L21TH_0714	1197.0	0	Belongs to the class-I aminoacyl-tRNA synthetase family	N/A
Pfam	UHGV-0033971_1	PF00133	N/A	N/A	tRNA synthetases class I (I, L, M and V)	tRNA-synt_1
Pfam	UHGV-0033971_1	PF13603	N/A	N/A	Leucyl-tRNA synthetase, editing domain	tRNA-synt_1_2
Pfam	UHGV-0033971_1	PF01406	N/A	N/A	tRNA synthetases class I (C) catalytic domain	tRNA-synt_1e
Pfam	UHGV-0033971_1	PF08264	N/A	N/A	Anticodon-binding domain of tRNA ligase	Anticodon_1
NCBIFam	UHGV-0033971_1	TIGR00396.1	N/A	N/A	leucine--tRNA ligase	N/A
COG	UHGV-0033971_1	COG0495	N/A	N/A	Leucyl-tRNA synthetase	N/A
HAMAP	UHGV-0033971_1	MF_00049_B	N/A	N/A	Leucine--tRNA ligase [leuS]	N/A
structural_annotation	UHGV-0033971_1	PF00133,MF_02004,NF009687,COG0525	N/A	N/A	N/A	N/A
KOfam	UHGV-0033971_2	K14059	244.4	0	int; integrase	N/A
PHROG	UHGV-0033971_2	phrog_1	225.3	0	integrase	integration and excision
UniRef90	UHGV-0033971_2	UniRef90_UPI0015C5C81A	219.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0033971_2	643648.Slip_1975	157.0	3.00018e-42	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0033971_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0033971_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0033971_2	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0033971_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_3	phrog_7312	105.8	3.5e-31	N/A	unknown function
eggNOG-mapper	UHGV-0033971_3	1282665.H353_01535	67.8	0.0000000000134	N/A	N/A
PADLOC	UHGV-0033971_3	KwaA_00002	87.1	2.6e-25	N/A	Kiwa
structural_annotation	UHGV-0033971_3	NF041622	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0033971_4	1280685.AUKC01000003_gene2942	55.8	0.00000652	N/A	N/A
KOfam	UHGV-0033971_5	K07171	54.4	5.5e-16	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0033971_5	phrog_1412	169.6	0	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0033971_5	UniRef90_A0A3B8SNW1	160.0	5.60519e-45	Growth inhibitor PemK	N/A
eggNOG-mapper	UHGV-0033971_5	596329.HMPREF0631_1341	147.0	1.07999e-40	PemK-like, MazF-like toxin of type II toxin-antitoxin system	N/A
Pfam	UHGV-0033971_5	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0033971_5	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
KOfam	UHGV-0033971_6	K01356	113.9	2.3e-33	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0033971_6	phrog_4	105.4	7.1e-31	transcriptional repressor	transcription regulation
UniRef90	UHGV-0033971_6	UniRef90_A0A1Q6M1Z8	224.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0033971_6	411490.ANACAC_00815	201.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0033971_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0033971_6	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0033971_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0033971_6	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0033971_7	K22299	40.3	0.000000000063	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0033971_7	UniRef90_UPI001A8DBF87	80.1	1.92e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0033971_7	438780.D2KRD7_9CAUD	77.4	2.75e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0033971_7	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
structural_annotation	UHGV-0033971_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0033971_11	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
KOfam	UHGV-0033971_12	K19220	42.0	0.0000000000099	cwlS; peptidoglycan DL-endopeptidase CwlS [EC:3.4.-.-]	N/A
UniRef90	UHGV-0033971_12	UniRef90_A0A1V5PEH7	76.6	2.1e-16	Cell division suppressor protein YneA	N/A
eggNOG-mapper	UHGV-0033971_12	509191.AEDB02000003_gene1050	73.2	0.00000000000000143	Lysin motif	N/A
Pfam	UHGV-0033971_12	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0033971_12	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0033971_12	PF01476,MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
KOfam	UHGV-0033971_14	K03111	139.2	4.49999e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0033971_14	phrog_44	142.4	2.49992e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033971_14	UniRef90_R6XT61	164.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0033971_14	509191.AEDB02000052_gene1361	145.0	3.60134e-43	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0033971_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0033971_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0033971_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0033971_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0033971_14	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_15	phrog_15768	166.2	0	N/A	unknown function
UniRef90	UHGV-0033971_15	UniRef90_UPI0011AD8C25	160.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-0033971_15	693979.Bache_0304	130.0	3.22e-35	N/A	N/A
AcrCatalog	UHGV-0033971_15	cluster_38323	142.0	6.44597e-44	NA	N/A
Pfam	UHGV-0033971_15	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0033971_15	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_16	phrog_4973	61.3	1.4e-17	N/A	unknown function
UniRef90	UHGV-0033971_16	UniRef90_A0A843HM15	56.2	0.0000000103	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0033971_16	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0033971_16	PF14090,NF040939	N/A	N/A	N/A	N/A
KOfam	UHGV-0033971_18	K04763	93.8	2.3e-27	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0033971_18	phrog_216	160.0	0	integrase	integration and excision
UniRef90	UHGV-0033971_18	UniRef90_A0A316S8J1	194.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0033971_18	1121324.CLIT_8c00830	191.0	0	integrase family	N/A
Pfam	UHGV-0033971_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0033971_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0033971_18	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_20	phrog_36	60.3	3.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0033971_20	UniRef90_A0A1C6LD55	72.4	0.000000000000154	RNA polymerase sigma factor, sigma-70 family	N/A
eggNOG-mapper	UHGV-0033971_20	411902.CLOBOL_05672	50.4	0.00000718	N/A	N/A
structural_annotation	UHGV-0033971_20	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_21	phrog_119	69.5	4.7e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0033971_21	UniRef90_A0A1B1YAD2	111.0	4.82e-30	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0033971_21	1094508.Tsac_2429	101.0	2.11e-26	HNH nucleases	N/A
COG	UHGV-0033971_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0033971_23	phrog_1066	77.7	1.3e-22	N/A	unknown function
UniRef90	UHGV-0033971_23	UniRef90_A0A7X8WV97	68.9	0.00000000000119	N/A	N/A
eggNOG-mapper	UHGV-0033971_23	561177.ANHYDRO_01405	80.1	6.9e-18	N/A	N/A
structural_annotation	UHGV-0033971_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_24	phrog_9	419.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0033971_24	UniRef90_A0A1B1YAC1	660.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0033971_24	1094508.Tsac_2427	635.0	0	Phage Terminase	N/A
Pfam	UHGV-0033971_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0033971_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0033971_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0033971_24	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_25	phrog_12	125.1	4.6e-37	portal protein	head and packaging
UniRef90	UHGV-0033971_25	UniRef90_A0A1T4M100	337.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0033971_25	411470.RUMGNA_02063	306.0	0	Phage portal protein	N/A
Pfam	UHGV-0033971_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0033971_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0033971_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0033971_26	K06904	136.5	2.5e-40	N/A	N/A
PHROG	UHGV-0033971_26	phrog_80	155.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0033971_26	UniRef90_F2JNC5	222.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0033971_26	642492.Clole_1857	222.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0033971_26	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0033971_26	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0033971_26	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0033971_26	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_27	phrog_10	146.3	2.39622e-43	major head protein	head and packaging
UniRef90	UHGV-0033971_27	UniRef90_A0A6N8H4E3	327.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0033971_27	1297617.JPJD01000020_gene308	315.0	0	Phage capsid family	N/A
Pfam	UHGV-0033971_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0033971_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0033971_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0033971_27	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_28	phrog_5223	106.8	7.9e-32	neck protein	connector
UniRef90	UHGV-0033971_28	UniRef90_A0A3R9QKC5	101.0	3.85e-26	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0033971_28	1094508.Tsac_2423	90.5	1.31e-22	N/A	N/A
Pfam	UHGV-0033971_28	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0033971_28	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
PHROG	UHGV-0033971_29	phrog_1951	81.3	8.6e-24	head-tail adaptor	connector
UniRef90	UHGV-0033971_29	UniRef90_A0A1T5AM50	58.9	0.0000000036	Phage head-tail adaptor, putative, SPP1 family	N/A
eggNOG-mapper	UHGV-0033971_29	596315.HMPREF0634_0222	56.6	0.0000000047	head-tail adaptor	N/A
COG	UHGV-0033971_29	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0033971_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
Pfam	UHGV-0033971_30	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0033971_30	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_31	phrog_957	41.8	0.000000000013	head protein	head and packaging
structural_annotation	UHGV-0033971_31	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_32	phrog_885	116.6	1.8e-34	major tail protein	tail
UniRef90	UHGV-0033971_32	UniRef90_A0A7C6X6S5	124.0	1.39e-31	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0033971_32	1160721.RBI_I01578	162.0	0	N/A	N/A
structural_annotation	UHGV-0033971_32	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_34	phrog_3981	122.6	3.1e-36	tail length tape measure protein	tail
UniRef90	UHGV-0033971_34	UniRef90_R6GII4	229.0	0	Immunity-specific protein Beta241	N/A
eggNOG-mapper	UHGV-0033971_34	1160721.RBI_I01576	191.0	0	tail tape measure protein, TP901	N/A
COG	UHGV-0033971_34	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0033971_34	PF10145,TIGR01760	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0033971_35	509191.AEDB02000075_gene2803	337.0	0	N/A	N/A
eggNOG-mapper	UHGV-0033971_36	509191.AEDB02000075_gene2804	114.0	1.6e-30	N/A	N/A
structural_annotation	UHGV-0033971_36	PF12571	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0033971_39	PF08481,NF032891,COG5456	N/A	N/A	N/A	N/A
Pfam	UHGV-0033971_40	PF03382	N/A	N/A	N/A	DUF285
NCBIFam	UHGV-0033971_40	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
structural_annotation	UHGV-0033971_40	PF03382	N/A	N/A	N/A	N/A
PHROG	UHGV-0033971_42	phrog_937	42.4	0.000000000013	hemolysin	other
eggNOG-mapper	UHGV-0033971_42	1519439.JPJG01000023_gene533	50.8	0.000000588	N/A	N/A
eggNOG-mapper	UHGV-0033971_43	1230342.CTM_05412	49.7	0.00000205	N/A	N/A
UniRef90	UHGV-0033971_44	UniRef90_A0A1C6GMR6	220.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0033971_44	1007096.BAGW01000014_gene1097	129.0	1.38e-32	NLP P60 protein	N/A
Pfam	UHGV-0033971_44	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0033971_44	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
KOfam	UHGV-0033971_45	K13277	56.5	3e-17	epr; minor extracellular protease Epr [EC:3.4.21.-]	N/A
UniRef90	UHGV-0033971_45	UniRef90_A0A843GTH5	238.0	0	S8 family serine peptidase	N/A
eggNOG-mapper	UHGV-0033971_45	1408437.JNJN01000008_gene890	68.9	0.000000000113	Ami_2	N/A
COG	UHGV-0033971_45	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0033971_45	PF00395,TIGR03921,COG1404	N/A	N/A	N/A	N/A
KOfam	UHGV-0033971_46	K07258	110.0	2.6e-32	dacC, dacA, dacD; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]	N/A
PHROG	UHGV-0033971_46	phrog_5304	85.7	3.7e-25	peptidase	other
UniRef90	UHGV-0033971_46	UniRef90_R6YDC6	125.0	6.52e-31	D-alanyl-D-alanine carboxypeptidase	N/A
eggNOG-mapper	UHGV-0033971_46	608506.COB47_1301	103.0	1.17e-22	PFAM peptidase S11, D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0033971_46	PF00768	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_S11
Pfam	UHGV-0033971_46	PF07943	N/A	N/A	Penicillin-binding protein 5, C-terminal domain	PBP5_C
COG	UHGV-0033971_46	COG1686	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0033971	Yes	30,404	30	98	1