vOTU vOTU-072648

vOTU: vOTU-072648

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-072648
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00089 → vGENUS-00756 → vSUBGEN-25355 → vOTU-072648
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0242403
Biosample ID	N/A
Genome length (bp)	32,218 bps
CheckV completeness	93.32% (High-quality)
CDS count	48
CDS density	93.40%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	746	Host agreement	97.86
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	335	Host agreement	99.7

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0242403_1	UniRef90_A0A5R9MHA3	242.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0242403_1	875454.BAEW01000002_gene486	51.6	0.0000026	N/A	N/A
PHROG	UHGV-0242403_2	phrog_8680	247.3	0	N/A	unknown function
UniRef90	UHGV-0242403_2	UniRef90_A0A373V619	491.0	0	N/A	N/A
eggNOG-mapper	UHGV-0242403_2	411470.RUMGNA_02208	272.0	0	N/A	N/A
Pfam	UHGV-0242403_2	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0242403_2	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_4	phrog_104	252.0	0	portal protein	head and packaging
UniRef90	UHGV-0242403_4	UniRef90_A0A373V3S0	797.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0242403_4	1280698.AUJS01000007_gene1033	491.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0242403_4	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_5	phrog_2494	167.4	0	minor head protein	head and packaging
UniRef90	UHGV-0242403_5	UniRef90_UPI001F3BD4CE	132.0	2.56e-31	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0242403_5	1214184.ALKY01000039_gene923	131.0	1.71e-31	N/A	N/A
eggNOG-mapper	UHGV-0242403_6	936596.HMPREF1495_2378	81.6	1.34e-19	N/A	N/A
PHROG	UHGV-0242403_7	phrog_872	93.5	2.5e-27	N/A	unknown function
UniRef90	UHGV-0242403_7	UniRef90_A0A373V416	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-0242403_7	1226322.HMPREF1545_00781	129.0	2.49e-36	N/A	N/A
Pfam	UHGV-0242403_7	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0242403_7	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0242403_7	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_8	phrog_17688	302.3	0	N/A	unknown function
UniRef90	UHGV-0242403_8	UniRef90_A0A373V412	849.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0242403_8	936375.HMPREF1152_0677	515.0	0	phage terminase, large subunit	N/A
COG	UHGV-0242403_8	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0242403_8	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_9	phrog_233	66.1	9.8e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0242403_9	UniRef90_A0A3E3DV05	75.5	0.000000000000015	N/A	N/A
eggNOG-mapper	UHGV-0242403_9	1280698.AUJS01000007_gene1037	67.0	0.00000000000519	N/A	N/A
Pfam	UHGV-0242403_9	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0242403_9	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_10	phrog_32396	126.7	7.1e-38	N/A	unknown function
UniRef90	UHGV-0242403_10	UniRef90_A0A373V3S9	583.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0242403_10	936375.HMPREF1152_0679	325.0	0	Phage capsid family	N/A
Pfam	UHGV-0242403_10	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0242403_10	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0242403_10	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_11	phrog_137	53.3	0.0000000000000038	head-tail adaptor Ad1	connector
UniRef90	UHGV-0242403_11	UniRef90_R6C7E8	160.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0242403_11	1121864.OMO_02154	87.0	5.13e-20	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0242403_11	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0242403_11	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_12	phrog_501	66.7	3.3e-19	head closure Hc1	connector
UniRef90	UHGV-0242403_12	UniRef90_R6CEU4	147.0	8.26766e-44	N/A	N/A
eggNOG-mapper	UHGV-0242403_12	1121864.OMO_02155	131.0	2.7e-38	N/A	N/A
structural_annotation	UHGV-0242403_12	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_13	phrog_387	60.0	3.9e-17	neck protein	connector
eggNOG-mapper	UHGV-0242403_13	1423775.BAMN01000011_gene600	69.3	0.0000000000000127	N/A	N/A
PHROG	UHGV-0242403_14	phrog_123	63.9	2.9e-18	tail terminator	connector
UniRef90	UHGV-0242403_14	UniRef90_A0A2A5RIK6	108.0	2.23e-28	N/A	N/A
eggNOG-mapper	UHGV-0242403_14	1321820.HMPREF1983_00928	113.0	5.64e-31	N/A	N/A
structural_annotation	UHGV-0242403_14	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_15	phrog_117	163.2	0	major tail protein	tail
UniRef90	UHGV-0242403_15	UniRef90_A0A373V4D0	367.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0242403_15	1121864.OMO_02158	191.0	0	domain, Protein	N/A
COG	UHGV-0242403_15	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0242403_15	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_16	phrog_1526	84.9	6.5e-25	N/A	unknown function
UniRef90	UHGV-0242403_16	UniRef90_G2SN49	65.1	0.0000000000068	N/A	N/A
eggNOG-mapper	UHGV-0242403_16	665950.HMPREF1025_02524	80.9	7.45e-19	N/A	N/A
PHROG	UHGV-0242403_17	phrog_1633	137.9	3.50002e-41	N/A	unknown function
UniRef90	UHGV-0242403_17	UniRef90_A0A139QHL2	124.0	3.32e-34	N/A	N/A
eggNOG-mapper	UHGV-0242403_17	873448.STRPO_0293	111.0	5.22e-30	N/A	N/A
Pfam	UHGV-0242403_17	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0242403_17	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_18	phrog_6900	265.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0242403_18	768726.HMPREF9178_1054	301.0	0	phage tail tape measure protein	N/A
COG	UHGV-0242403_18	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0242403_18	PF16535	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_19	phrog_1194	51.6	0.000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0242403_19	1160721.RBI_II00527	100.0	8.58e-26	N/A	N/A
structural_annotation	UHGV-0242403_19	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_20	phrog_6616	51.9	6.8e-26	tail protein	tail
eggNOG-mapper	UHGV-0242403_20	1160721.RBI_II00526	729.0	0	N/A	N/A
structural_annotation	UHGV-0242403_20	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_24	phrog_13256	77.1	1.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0242403_24	1160721.RBI_II00522	96.3	1.08e-25	N/A	N/A
PHROG	UHGV-0242403_25	phrog_1863	52.0	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0242403_25	1226322.HMPREF1545_04027	72.0	0.00000000000000235	N/A	N/A
KOfam	UHGV-0242403_26	K01447	57.5	2.8e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0242403_26	phrog_7698	162.8	0	endolysin	lysis
UniRef90	UHGV-0242403_26	UniRef90_A0A5R9MKH3	511.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0242403_26	877411.JMMA01000002_gene2384	191.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0242403_26	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0242403_26	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0242403_26	PF01510,PF18342,MF_04111,NF008758,COG3023,COG3807	N/A	N/A	N/A	N/A
KOfam	UHGV-0242403_27	K14059	250.8	0	int; integrase	N/A
PHROG	UHGV-0242403_27	phrog_1	211.6	0	integrase	integration and excision
UniRef90	UHGV-0242403_27	UniRef90_A0A1C6FGR9	745.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0242403_27	1408823.AXUS01000024_gene2685	173.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-0242403_27	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0242403_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0242403_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0242403_27	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0242403_28	K07449	139.3	2.09999e-41	K07449; similar to archaeal holliday junction resolvase and Mrr protein	N/A
PHROG	UHGV-0242403_28	phrog_19856	59.8	3.2e-17	N/A	unknown function
UniRef90	UHGV-0242403_28	UniRef90_A0A356CZV8	474.0	0	Mrr_cat domain-containing protein	N/A
eggNOG-mapper	UHGV-0242403_28	697329.Rumal_1169	171.0	0	Restriction endonuclease	N/A
PADLOC	UHGV-0242403_28	ZorD1_00005	72.6	3.7e-21	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0242403_28	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0242403_28	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
KOfam	UHGV-0242403_29	K01356	153.6	1.4013e-45	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0242403_29	phrog_4	119.1	4.7e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0242403_29	UniRef90_A0A373VMR3	338.0	0	Repressor LexA	N/A
eggNOG-mapper	UHGV-0242403_29	411473.RUMCAL_03095	208.0	0	N/A	N/A
Pfam	UHGV-0242403_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0242403_29	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0242403_29	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0242403_29	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0242403_30	UniRef90_A0A373VPI4	136.0	1.20999e-40	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0242403_30	1292035.H476_1036	54.3	0.000000006	N/A	N/A
structural_annotation	UHGV-0242403_30	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0242403_31	UniRef90_R6C4T1	107.0	2.85e-29	Putative phage protein	N/A
structural_annotation	UHGV-0242403_31	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_32	phrog_5079	61.9	8.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0242403_32	1341157.RF007C_05240	45.4	0.00000395	N/A	N/A
UniRef90	UHGV-0242403_33	UniRef90_A0A5R9MJ58	105.0	2.02e-28	Helix-turn-helix transcriptional regulator (Fragment)	N/A
KOfam	UHGV-0242403_34	K07741	143.7	2.79979e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-0242403_34	phrog_130	282.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0242403_34	UniRef90_A0A7G5MXK6	342.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0242403_34	887325.HMPREF0381_0355	340.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0242403_34	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0242403_34	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0242403_34	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0242403_34	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_35	phrog_14088	47.7	0.00000000000011	N/A	unknown function
UniRef90	UHGV-0242403_35	UniRef90_A0A374HW23	127.0	7.26e-37	Carboxypeptidase	N/A
eggNOG-mapper	UHGV-0242403_35	626523.GCWU000342_01045	63.5	0.00000000000135	N/A	N/A
structural_annotation	UHGV-0242403_37	PF11372	N/A	N/A	N/A	N/A
KOfam	UHGV-0242403_42	K03546	58.0	1.2e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0242403_42	phrog_1499	473.2	0	N/A	unknown function
UniRef90	UHGV-0242403_42	UniRef90_A0A1C6E8X2	753.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0242403_42	641112.ACOK01000073_gene2873	521.0	0	domain protein	N/A
Pfam	UHGV-0242403_42	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0242403_42	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0242403_42	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_43	phrog_124	242.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0242403_43	UniRef90_UPI000F52E538	478.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0242403_43	1235792.C808_05390	422.0	0	AAA domain	N/A
Pfam	UHGV-0242403_43	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0242403_43	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_44	phrog_2698	192.9	0	N/A	unknown function
UniRef90	UHGV-0242403_44	UniRef90_UPI001D0882DA	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-0242403_44	742723.HMPREF9477_00927	163.0	0	N/A	N/A
structural_annotation	UHGV-0242403_44	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-0242403_45	K17677	350.1	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0242403_45	phrog_16	284.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0242403_45	UniRef90_A0A1C6E943	1046.0	0	Type-1 restriction enzyme R protein	N/A
eggNOG-mapper	UHGV-0242403_45	1235792.C808_05388	818.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0242403_45	mREase_IV_00005	122.8	3.3e-36	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0242403_45	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0242403_45	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0242403_45	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0242403_45	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0242403_46	K07505	435.4	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0242403_46	phrog_2597	1196.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0242403_46	UniRef90_A0A1C6E992	1503.0	0	Regulatory protein repA	N/A
eggNOG-mapper	UHGV-0242403_46	394503.Ccel_3304	1018.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0242403_46	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0242403_46	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0242403_46	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0242403_46	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-0242403_47	phrog_16687	96.6	1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0242403_47	1123511.KB905868_gene197	75.9	5.56e-17	N/A	N/A
PHROG	UHGV-0242403_48	phrog_140	85.9	5.5e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0242403_48	UniRef90_A0A373Y8T3	257.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0242403_48	411462.DORLON_00806	193.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0242403_48	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0242403_48	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0242403_48	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0242403	Yes	32,218	46	93	1
UHGV-1443157	No	32,218	46	93	1
UHGV-0142894	No	25,567	47	74	1
UHGV-1492475	No	25,567	47	74	1
UHGV-1428697	No	20,867	45	61	1
UHGV-1546971	No	10,272	45	30	1