vOTU vOTU-072749

vOTU: vOTU-072749

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-072749
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-09080 → vSUBGEN-10103 → vOTU-072749
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0319334
Biosample ID	SAMD00164823
Genome length (bp)	47,835 bps
CheckV completeness	99.90% (High-quality)
CDS count	59
CDS density	86.25%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	985	Host agreement	79.7
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	46	Host agreement	93.48

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0319334_1	phrog_36	57.0	4.2e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0319334_1	397290.C810_01391	109.0	4.55e-29	N/A	N/A
structural_annotation	UHGV-0319334_1	MF_00307	N/A	N/A	N/A	N/A
KOfam	UHGV-0319334_2	K07474	152.5	4.2039e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0319334_2	phrog_51	161.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0319334_2	UniRef90_A0A413YU49	371.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0319334_2	1499683.CCFF01000014_gene3916	149.0	9.94922e-43	Terminase small subunit	N/A
Pfam	UHGV-0319334_2	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0319334_2	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0319334_2	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0319334_3	K06909	95.1	9.3e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0319334_3	phrog_2	69.6	6.6e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0319334_3	UniRef90_A0A413YU24	952.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0319334_3	1294142.CINTURNW_1023	522.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0319334_3	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0319334_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0319334_3	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_4	phrog_533	286.1	0	portal protein	head and packaging
UniRef90	UHGV-0319334_4	UniRef90_A0A413YU90	955.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0319334_4	33035.JPJF01000093_gene2257	548.0	0	N/A	N/A
structural_annotation	UHGV-0319334_4	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_5	phrog_581	245.7	0	minor head protein	head and packaging
UniRef90	UHGV-0319334_5	UniRef90_A0A413YU28	652.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0319334_5	33035.JPJF01000093_gene2255	440.0	0	N/A	N/A
Pfam	UHGV-0319334_5	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0319334_5	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0319334_5	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_7	phrog_872	81.3	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0319334_7	397290.C810_05225	115.0	2.5e-31	N/A	N/A
dbAPIS	UHGV-0319334_7	APIS052	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_8	phrog_2303	137.0	1.4e-40	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0319334_8	483218.BACPEC_01156	134.0	1.97e-36	N/A	N/A
PHROG	UHGV-0319334_9	phrog_422	252.7	0	major head protein	head and packaging
UniRef90	UHGV-0319334_9	UniRef90_A0A417V845	491.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0319334_9	663278.Ethha_1589	374.0	0	N/A	N/A
structural_annotation	UHGV-0319334_9	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_10	phrog_541	72.8	4.5e-21	head-tail adaptor	connector
eggNOG-mapper	UHGV-0319334_10	1304866.K413DRAFT_0783	147.0	5.32493e-44	N/A	N/A
PHROG	UHGV-0319334_11	phrog_8710	117.9	4.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-0319334_11	33035.JPJF01000093_gene2249	105.0	3.98e-28	N/A	N/A
structural_annotation	UHGV-0319334_11	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_12	phrog_556	57.9	1.5e-16	minor head protein	head and packaging
eggNOG-mapper	UHGV-0319334_12	742740.HMPREF9474_03509	140.0	3.55005e-41	N/A	N/A
PHROG	UHGV-0319334_13	phrog_2595	88.6	5.9e-26	head-tail connector protein	connector
UniRef90	UHGV-0319334_13	UniRef90_UPI001D068DAC	144.0	9.6003e-42	minor capsid protein	N/A
eggNOG-mapper	UHGV-0319334_13	742740.HMPREF9474_03510	132.0	8.23e-38	N/A	N/A
Pfam	UHGV-0319334_13	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0319334_13	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_14	phrog_820	112.9	2e-33	major tail protein	tail
UniRef90	UHGV-0319334_14	UniRef90_T3DDR1	186.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0319334_14	1151292.QEW_2426	186.0	0	N/A	N/A
structural_annotation	UHGV-0319334_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_15	phrog_8300	66.6	3.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0319334_15	1151292.QEW_2425	58.9	0.000000000866	N/A	N/A
structural_annotation	UHGV-0319334_15	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_16	phrog_8355	100.9	3.2e-30	N/A	unknown function
UniRef90	UHGV-0319334_16	UniRef90_UPI0006BBA9AA	139.0	5.70001e-40	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0319334_16	394503.Ccel_3036	114.0	8.41e-31	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0319334_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0319334_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_17	phrog_1535	268.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0319334_17	UniRef90_R6TDK7	345.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0319334_17	717606.PaecuDRAFT_3132	328.0	0	Phage-related minor tail protein	N/A
COG	UHGV-0319334_17	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0319334_17	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_18	phrog_1194	81.1	1.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0319334_18	33035.JPJF01000093_gene2242	153.0	0	N/A	N/A
structural_annotation	UHGV-0319334_18	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_19	phrog_1401	65.1	1.1e-18	N/A	unknown function
UniRef90	UHGV-0319334_19	UniRef90_UPI0007099B7A	68.2	0.00000000000485	N/A	N/A
eggNOG-mapper	UHGV-0319334_19	1294142.CINTURNW_1705	59.3	0.00000000216	N/A	N/A
structural_annotation	UHGV-0319334_19	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_20	phrog_6616	161.2	0	tail protein	tail
UniRef90	UHGV-0319334_20	UniRef90_A0A8D9PGP3	772.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0319334_20	1499683.CCFF01000014_gene3896	274.0	0	Phage minor structural protein	N/A
COG	UHGV-0319334_20	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0319334_20	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_21	phrog_2566	44.2	0.0000000000028	N/A	unknown function
UniRef90	UHGV-0319334_24	UniRef90_R9JSK8	83.2	2.75e-17	Core-binding (CB) domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0319334_24	33035.JPJF01000058_gene3673	101.0	5.36e-24	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0319334_24	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
COG	UHGV-0319334_24	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0319334_24	PF13495	N/A	N/A	N/A	N/A
PHROG	UHGV-0319334_25	phrog_199	71.4	1.1e-20	holin	lysis
UniRef90	UHGV-0319334_25	UniRef90_A0A356C4Q2	240.0	0	Holin	N/A
eggNOG-mapper	UHGV-0319334_25	483218.BACPEC_01140	211.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0319334_25	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0319334_25	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0319334_25	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0319334_25	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0319334_26	K07273	120.6	1.8e-35	acm; lysozyme	N/A
PHROG	UHGV-0319334_26	phrog_291	96.3	4e-28	endolysin	lysis
UniRef90	UHGV-0319334_26	UniRef90_A0A356C4L5	750.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0319334_26	515620.EUBELI_01316	168.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0319334_26	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0319334_26	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0319334_26	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0319334_27	K14059	140.0	2.59997e-41	int; integrase	N/A
PHROG	UHGV-0319334_27	phrog_1	153.9	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0319334_27	UniRef90_UPI0006C4D548	691.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0319334_27	658088.HMPREF0987_00682	274.0	0	Phage integrase family	N/A
Pfam	UHGV-0319334_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0319334_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0319334_27	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0319334_28	K06223	40.5	1.7e-21	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
Pfam	UHGV-0319334_28	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UniRef90	UHGV-0319334_29	UniRef90_A0A2U2ED55	134.0	3.49e-38	HTH merR-type domain-containing protein	N/A
Pfam	UHGV-0319334_29	PF13411	N/A	N/A	MerR HTH family regulatory protein	MerR_1
Pfam	UHGV-0319334_29	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
KOfam	UHGV-0319334_30	K07496	230.6	0	K07496; putative transposase	N/A
PHROG	UHGV-0319334_30	phrog_506	258.8	0	transposase	integration and excision
UniRef90	UHGV-0319334_30	UniRef90_H3KA57	256.0	0	IS605 OrfB family transposase	N/A
eggNOG-mapper	UHGV-0319334_30	545243.BAEV01000006_gene1308	253.0	0	Transposase	N/A
PADLOC	UHGV-0319334_30	Type_V_V_U4	115.1	8.7e-36	Cas12	CRISPR-CAS
Pfam	UHGV-0319334_30	PF12323	N/A	N/A	Helix-turn-helix domain	HTH_OrfB_IS605
Pfam	UHGV-0319334_30	PF01385	N/A	N/A	Probable transposase	OrfB_IS605
Pfam	UHGV-0319334_30	PF07282	N/A	N/A	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
NCBIFam	UHGV-0319334_30	NF040570.1	N/A	N/A	RNA-guided endonuclease TnpB family protein	N/A
COG	UHGV-0319334_30	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0319334_30	PF07282,PF01385,NF038281,COG0675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0319334_41	511680.BUTYVIB_01910	65.1	0.0000000000676	helicase domain protein	N/A
COG	UHGV-0319334_41	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
PHROG	UHGV-0319334_43	phrog_2598	133.7	1.3e-39	N/A	unknown function
UniRef90	UHGV-0319334_43	UniRef90_UPI0006C6255F	808.0	0	N/A	N/A
eggNOG-mapper	UHGV-0319334_43	97139.C824_03513	267.0	0	N/A	N/A
Pfam	UHGV-0319334_43	PF03235	N/A	N/A	N/A	DUF262
COG	UHGV-0319334_43	COG1479	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0319334_43	PF03235,MF_02015,NF041060,COG1479	N/A	N/A	N/A	N/A
UniRef90	UHGV-0319334_44	UniRef90_A0A412ZE61	99.4	3.83e-24	N/A	N/A
Pfam	UHGV-0319334_44	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0319334_44	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
UniRef90	UHGV-0319334_45	UniRef90_A0A2U2EDL5	142.0	6.67018e-43	N/A	N/A
eggNOG-mapper	UHGV-0319334_45	411460.RUMTOR_00464	51.6	0.0000000927	N/A	N/A
Pfam	UHGV-0319334_45	PF14192	N/A	N/A	N/A	DUF4314
COG	UHGV-0319334_45	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
structural_annotation	UHGV-0319334_45	PF14192,MF_00754,NF003018,COG0779	N/A	N/A	N/A	N/A
KOfam	UHGV-0319334_46	K07727	40.3	0.000000000075	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0319334_46	UniRef90_R6UUB2	151.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0319334_46	1410632.JHWW01000009_gene2574	111.0	3.02e-31	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0319334_46	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0319334_46	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0319334_47	UniRef90_A0A414ZLS4	534.0	0	LPXTG cell wall anchor domain-containing protein	N/A
eggNOG-mapper	UHGV-0319334_47	515620.EUBELI_00910	223.0	0	cell wall organization	N/A
NCBIFam	UHGV-0319334_47	TIGR03063.1	N/A	N/A	sortase B protein-sorting domain-containing protein	N/A
COG	UHGV-0319334_47	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
KOfam	UHGV-0319334_48	K07496	309.0	0	K07496; putative transposase	N/A
PHROG	UHGV-0319334_48	phrog_506	348.1	0	transposase	integration and excision
UniRef90	UHGV-0319334_48	UniRef90_UPI0005E479CB	322.0	0	RNA-guided endonuclease TnpB family protein	N/A
eggNOG-mapper	UHGV-0319334_48	545243.BAEV01000006_gene1308	308.0	0	Transposase	N/A
PADLOC	UHGV-0319334_48	Type_V_V_U4	182.2	0	Cas12	CRISPR-CAS
Pfam	UHGV-0319334_48	PF12323	N/A	N/A	Helix-turn-helix domain	HTH_OrfB_IS605
Pfam	UHGV-0319334_48	PF01385	N/A	N/A	Probable transposase	OrfB_IS605
Pfam	UHGV-0319334_48	PF07282	N/A	N/A	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
NCBIFam	UHGV-0319334_48	NF040570.1	N/A	N/A	RNA-guided endonuclease TnpB family protein	N/A
COG	UHGV-0319334_48	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0319334_48	PF07282,PF01385,NF038281,COG0675	N/A	N/A	N/A	N/A
Pfam	UHGV-0319334_49	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
KOfam	UHGV-0319334_56	K25135	135.4	4.7e-40	K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]	N/A
UniRef90	UHGV-0319334_56	UniRef90_UPI001BC9BFFB	120.0	1.5e-29	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-0319334_56	401526.TcarDRAFT_0065	119.0	6.84e-31	HD domain	N/A
Pfam	UHGV-0319334_56	PF13487	N/A	N/A	HD domain	HD_5
NCBIFam	UHGV-0319334_56	TIGR00277.1	N/A	N/A	HDIG domain-containing protein	N/A
COG	UHGV-0319334_56	COG2206	N/A	N/A	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant)	N/A
structural_annotation	UHGV-0319334_57	PF16968,PF03308,NF033117,COG4565	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0319334	Yes	47,835	36	100	1