vOTU vOTU-073069

vOTU: vOTU-073069

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-073069
Number of genomes	7
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00556 → vGENUS-00560 → vSUBGEN-32248 → vOTU-073069
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0171464
Biosample ID	N/A
Genome length (bp)	42,852 bps
CheckV completeness	99.73% (High-quality)
CDS count	63
CDS density	93.06%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315	Total connections	100	Host agreement	87
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	9	Host agreement	88.89

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0171464_2	phrog_7566	76.2	3.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0171464_2	693746.OBV_25470	69.3	0.0000000000000761	N/A	N/A
PHROG	UHGV-0171464_3	phrog_72	43.9	0.0000000000023	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171464_3	UniRef90_A0A8D9PDS2	124.0	6.12e-33	NinB protein	N/A
eggNOG-mapper	UHGV-0171464_3	411470.RUMGNA_02194	57.0	0.0000000852	N/A	N/A
structural_annotation	UHGV-0171464_3	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-0171464_4	K02315	122.9	3.6e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0171464_4	phrog_50	117.8	1.2e-34	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171464_4	UniRef90_A0A810Q3X8	187.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0171464_4	445972.ANACOL_01829	177.0	0	N/A	N/A
Pfam	UHGV-0171464_4	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0171464_4	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0171464_4	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0171464_5	phrog_15768	96.6	3.3e-28	N/A	unknown function
UniRef90	UHGV-0171464_5	UniRef90_UPI00164BB1D1	94.4	9.33e-20	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0171464_5	203119.Cthe_2466	106.0	2.66e-24	N/A	N/A
structural_annotation	UHGV-0171464_5	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0171464_6	K03111	142.0	6.89999e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0171464_6	phrog_44	138.2	5.40004e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171464_6	UniRef90_A0A316NQ75	179.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0171464_6	1007096.BAGW01000023_gene151	166.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0171464_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0171464_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0171464_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0171464_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0171464_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0171464_7	phrog_7838	123.8	1.5e-36	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171464_7	UniRef90_A0A8D9UGW3	181.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0171464_7	742767.HMPREF9456_02052	161.0	0	N/A	N/A
structural_annotation	UHGV-0171464_7	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0171464_10	phrog_2113	44.1	0.0000000000018	N/A	unknown function
UniRef90	UHGV-0171464_10	UniRef90_A0A8D9UH91	113.0	1.49e-28	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0171464_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0171464_10	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171464_14	1235835.C814_03153	61.2	0.000000000014	N/A	N/A
structural_annotation	UHGV-0171464_14	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171464_18	UniRef90_A0A417JTP9	89.0	8.9e-22	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0171464_18	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0171464_18	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171464_22	UniRef90_A0A380GNU7	86.3	1.32e-20	Regulatory protein	N/A
eggNOG-mapper	UHGV-0171464_22	171693.BN988_01635	84.0	1.81e-20	N/A	N/A
Pfam	UHGV-0171464_22	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0171464_22	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0171464_22	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0171464_23	K22300	41.2	0.000000000031	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0171464_23	phrog_2967	52.0	0.0000000000000092	transcriptional regulator	transcription regulation
UniRef90	UHGV-0171464_23	UniRef90_A0A3A6EEH6	114.0	1.21e-29	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0171464_23	457412.RSAG_00795	95.9	1.04e-22	sequence-specific DNA binding	N/A
Pfam	UHGV-0171464_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171464_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
NCBIFam	UHGV-0171464_26	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0171464_26	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0171464_27	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0171464_29	K14059	97.2	2.7e-28	int; integrase	N/A
PHROG	UHGV-0171464_29	phrog_1	123.9	1.5e-36	integrase	integration and excision
UniRef90	UHGV-0171464_29	UniRef90_UPI00195CC1EE	446.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0171464_29	411471.SUBVAR_05816	119.0	7.92e-28	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0171464_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0171464_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0171464_29	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171464_30	UniRef90_A0A843GWV6	91.7	5.25e-22	Rubrerythrin domain-containing protein	N/A
structural_annotation	UHGV-0171464_31	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0171464_33	phrog_22984	41.0	0.000000000037	N/A	unknown function
structural_annotation	UHGV-0171464_34	PF20477,NF033819	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171464_35	UniRef90_A0A8D9PDT6	82.8	5.67e-19	Transcriptional regulatory protein	N/A
PHROG	UHGV-0171464_36	phrog_1129	69.7	3.2e-20	holin	lysis
UniRef90	UHGV-0171464_36	UniRef90_A0A2V2CUX8	126.0	3.4e-36	Enolase	N/A
eggNOG-mapper	UHGV-0171464_36	1226322.HMPREF1545_00069	117.0	2.06e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0171464_36	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0171464_36	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0171464_37	phrog_937	61.4	1.9e-17	hemolysin	other
eggNOG-mapper	UHGV-0171464_37	1519439.JPJG01000023_gene533	86.3	9.49e-21	N/A	N/A
PHROG	UHGV-0171464_38	phrog_1493	53.0	0.0000000000000077	endolysin	lysis
UniRef90	UHGV-0171464_38	UniRef90_A0A1C6GMR6	199.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0171464_38	394503.Ccel_3272	116.0	5.93e-29	NLP P60 protein	N/A
Pfam	UHGV-0171464_38	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0171464_38	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0171464_38	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0171464_40	phrog_511	231.4	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0171464_40	1410650.JHWL01000003_gene2827	310.0	0	N/A	N/A
structural_annotation	UHGV-0171464_40	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0171464_41	phrog_12105	112.2	3.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0171464_41	1519439.JPJG01000060_gene1891	78.2	6.11e-17	N/A	N/A
PHROG	UHGV-0171464_42	phrog_15239	51.8	0.000000000000014	N/A	unknown function
PHROG	UHGV-0171464_43	phrog_1357	201.0	0	major head protein	head and packaging
UniRef90	UHGV-0171464_43	UniRef90_A0A3C0NPN1	585.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0171464_43	1410650.JHWL01000003_gene2830	262.0	0	N/A	N/A
NCBIFam	UHGV-0171464_43	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0171464_43	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0171464_44	phrog_13908	116.8	1.4e-34	N/A	unknown function
PHROG	UHGV-0171464_45	phrog_22978	713.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0171464_45	1410650.JHWL01000003_gene2814	278.0	0	N/A	N/A
Pfam	UHGV-0171464_45	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-0171464_46	1410650.JHWL01000003_gene2815	67.8	0.00000000129	N/A	N/A
PHROG	UHGV-0171464_47	phrog_372	124.6	7.7e-37	tail protein	tail
UniRef90	UHGV-0171464_47	UniRef90_UPI001373A0FD	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0171464_47	556261.HMPREF0240_01282	128.0	3.24e-28	N/A	N/A
Pfam	UHGV-0171464_47	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0171464_47	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0171464_47	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
KOfam	UHGV-0171464_48	K07584	48.4	0.00000000000019	N/A	N/A
PHROG	UHGV-0171464_48	phrog_4478	52.7	0.0000000000000059	peptidase	other
UniRef90	UHGV-0171464_48	UniRef90_A0A7C6WRZ1	58.2	0.00000000444	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0171464_48	718252.FP2_29210	50.1	0.00000669	Cysteine protease Prp	N/A
Pfam	UHGV-0171464_48	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0171464_48	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171464_48	PF04327,NF011132,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0171464_49	phrog_156	288.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0171464_49	1410650.JHWL01000003_gene2833	520.0	0	N/A	N/A
structural_annotation	UHGV-0171464_49	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0171464_50	K06909	106.1	4.6e-31	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0171464_50	phrog_979	216.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0171464_50	UniRef90_A0A2V2CDD6	798.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0171464_50	411483.FAEPRAA2165_01044	556.0	0	Terminase-like family	N/A
Pfam	UHGV-0171464_50	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0171464_50	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0171464_50	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171464_51	UniRef90_A0A3C0NNN3	77.8	0.00000000000000466	HTH psq-type domain-containing protein	N/A
PHROG	UHGV-0171464_53	phrog_190	118.8	4.5e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171464_53	UniRef90_UPI000367648A	111.0	2.39e-29	N/A	N/A
eggNOG-mapper	UHGV-0171464_53	445974.CLORAM_02947	112.0	1.29e-30	N/A	N/A
Pfam	UHGV-0171464_53	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0171464_53	PF06356	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171464_55	1123263.AUKY01000096_gene1822	69.3	0.00000000000964	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0171464_55	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0171464_60	phrog_111	153.2	1.4013e-45	DNA methyltransferase	other
UniRef90	UHGV-0171464_60	UniRef90_A0A316S635	208.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0171464_60	1450694.BTS2_0497	186.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0171464_60	oMTase_00015	181.1	0	orphan methyltransferase	RM
Pfam	UHGV-0171464_60	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0171464_60	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
KOfam	UHGV-0171464_61	K00390	106.0	4e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0171464_61	phrog_424	127.2	1.1e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0171464_61	UniRef90_UPI00164AFBC1	368.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0171464_61	1408437.JNJN01000032_gene2312	352.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-0171464_61	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0171464_61	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0171464_61	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0171464_62	phrog_757	182.3	0	DNA methyltransferase	other
UniRef90	UHGV-0171464_62	UniRef90_A0A417JTT5	243.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0171464_62	1095750.HMPREF9970_0173	234.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0171464_62	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0171464_62	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
dbAPIS	UHGV-0171464_63	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0171464	Yes	42,852	57	100	1
UHGV-0058419	No	38,094	58	89	1
UHGV-1398105	No	38,094	58	89	1
UHGV-1434384	No	37,496	58	87	1
UHGV-1455884	No	34,535	58	81	1
UHGV-0055150	No	24,134	56	56	1
UHGV-0117493	No	14,791	57	35	1