vOTU vOTU-073071

vOTU: vOTU-073071

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-073071
Number of genomes	10
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-02845 → vGENUS-05416 → vSUBGEN-17287 → vOTU-073071
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0388954
Biosample ID	N/A
Genome length (bp)	39,629 bps
CheckV completeness	99.43% (High-quality)
CDS count	57
CDS density	89.40%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	291	Host agreement	98.63
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	39	Host agreement	94.87

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0388954_2	1408437.JNJN01000060_gene452	642.0	0	heme binding	N/A
COG	UHGV-0388954_2	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-0388954_3	K14059	166.7	0	int; integrase	N/A
PHROG	UHGV-0388954_3	phrog_1	166.7	0	integrase	integration and excision
UniRef90	UHGV-0388954_3	UniRef90_UPI0018989279	466.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0388954_3	936580.HMPREF1516_0752	72.4	0.0000000000422	DNA integration	N/A
Pfam	UHGV-0388954_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0388954_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0388954_3	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0388954_4	411467.BACCAP_02671	53.9	0.000000505	Endonuclease Exonuclease Phosphatase	N/A
COG	UHGV-0388954_4	COG2374	N/A	N/A	Predicted extracellular nuclease	N/A
UniRef90	UHGV-0388954_5	UniRef90_A0A316RN54	55.1	0.00000622	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0388954_5	428125.CLOLEP_02739	81.6	3.79e-17	N/A	N/A
COG	UHGV-0388954_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
PHROG	UHGV-0388954_6	phrog_8	68.4	1.4e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0388954_6	UniRef90_A0A3A6E628	149.0	3.92364e-44	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0388954_6	665956.HMPREF1032_02614	92.0	2.25e-22	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0388954_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0388954_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0388954_7	UniRef90_A0A316PLZ6	100.0	2.19e-26	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0388954_7	428125.CLOLEP_02737	80.5	3.54e-19	N/A	N/A
structural_annotation	UHGV-0388954_7	TIGR03070	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0388954_15	cluster_35670	155.0	0	NA	N/A
structural_annotation	UHGV-0388954_15	NF042413	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_16	phrog_1123	43.4	0.0000000000047	N/A	unknown function
structural_annotation	UHGV-0388954_16	PF02002,MF_01804,NF040939,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_18	phrog_2872	201.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0388954_18	UniRef90_A0A372V4A8	403.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0388954_18	1415774.U728_1119	262.0	0	AAA domain	N/A
structural_annotation	UHGV-0388954_18	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_19	phrog_18107	86.9	2.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0388954_19	476272.RUMHYD_02831	143.0	2.48e-40	N/A	N/A
structural_annotation	UHGV-0388954_19	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_20	phrog_3490	120.6	1.1e-35	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0388954_20	UniRef90_A0A372V4F7	351.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0388954_20	476272.RUMHYD_01740	186.0	0	ERCC4 domain	N/A
Pfam	UHGV-0388954_20	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-0388954_20	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-0388954_20	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0388954_21	K02316	78.1	1.2e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0388954_21	phrog_11992	109.2	4.3e-32	N/A	unknown function
UniRef90	UHGV-0388954_21	UniRef90_A0A372V3Z0	339.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0388954_21	742738.HMPREF9460_02494	88.2	1.37e-19	CHC2 zinc finger	N/A
PADLOC	UHGV-0388954_21	drt-cluster192	61.7	1.7e-17	DRT	DRT
Pfam	UHGV-0388954_21	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0388954_21	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0388954_21	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_22	phrog_8841	471.0	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0388954_22	UniRef90_A0A372V3W4	1219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0388954_22	742738.HMPREF9460_02495	598.0	0	N/A	N/A
Pfam	UHGV-0388954_22	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0388954_22	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0388954_22	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0388954_22	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_25	phrog_111	161.6	0	DNA methyltransferase	other
UniRef90	UHGV-0388954_25	UniRef90_A0A372V642	317.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0388954_25	411468.CLOSCI_00567	192.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0388954_25	oMTase_00015	203.7	0	orphan methyltransferase	RM
Pfam	UHGV-0388954_25	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0388954_25	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
UniRef90	UHGV-0388954_26	UniRef90_A0A8D9PDK2	50.1	0.00000599	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0388954_28	phrog_757	250.3	0	DNA methyltransferase	other
UniRef90	UHGV-0388954_28	UniRef90_A0A372V4B7	389.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0388954_28	485918.Cpin_3834	271.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0388954_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0388954_28	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_29	phrog_38832	58.3	1.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0388954_29	665956.HMPREF1032_03087	87.4	1.66e-21	N/A	N/A
KOfam	UHGV-0388954_30	K07497	163.0	0	K07497; putative transposase	N/A
PHROG	UHGV-0388954_30	phrog_157	288.4	0	transposase	integration and excision
UniRef90	UHGV-0388954_30	UniRef90_G9RYN2	555.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0388954_30	411471.SUBVAR_04707	555.0	0	HTH-like domain	N/A
Pfam	UHGV-0388954_30	PF13276	N/A	N/A	HTH-like domain	HTH_21
Pfam	UHGV-0388954_30	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0388954_30	PF13683	N/A	N/A	Integrase core domain	rve_3
NCBIFam	UHGV-0388954_30	NF033516.0	N/A	N/A	IS3 family transposase	N/A
COG	UHGV-0388954_30	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0388954_30	PF00665,PF13276,NF033516,COG2801	N/A	N/A	N/A	N/A
KOfam	UHGV-0388954_31	K07483	60.9	3.5e-17	K07483; transposase	N/A
PHROG	UHGV-0388954_31	phrog_151	51.0	0.00000000000002	transposase	integration and excision
UniRef90	UHGV-0388954_31	UniRef90_A0A0W7TKZ5	195.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0388954_31	1280698.AUJS01000017_gene1806	205.0	0	Transposase	N/A
Pfam	UHGV-0388954_31	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0388954_31	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0388954_31	PF02796,MF_00674,NF006928,COG3415	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0388954_32	665956.HMPREF1032_00143	54.3	0.0000000622	N/A	N/A
structural_annotation	UHGV-0388954_33	PF06257,NF011232	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0388954_34	665956.HMPREF1032_03084	68.9	0.0000000000000137	N/A	N/A
PHROG	UHGV-0388954_36	phrog_2245	90.3	2.1e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0388954_36	UniRef90_A0A4U9RLZ8	73.9	0.000000000000003	N/A	N/A
eggNOG-mapper	UHGV-0388954_36	1519439.JPJG01000059_gene1914	68.2	0.000000000000198	N/A	N/A
PHROG	UHGV-0388954_38	phrog_19458	259.8	0	primase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0388954_38	397291.C804_05264	199.0	0	N/A	N/A
COG	UHGV-0388954_38	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
PHROG	UHGV-0388954_39	phrog_25027	83.5	1.5e-24	N/A	unknown function
UniRef90	UHGV-0388954_39	UniRef90_A0A1Y3RPR4	103.0	3.57e-26	ArdcN domain-containing protein	N/A
eggNOG-mapper	UHGV-0388954_39	1399942.U3PBI8_9CAUD	84.7	1.1e-19	N/A	N/A
Pfam	UHGV-0388954_39	PF08401	N/A	N/A	N-terminal domain of anti-restriction factor ArdC	ArdcN
structural_annotation	UHGV-0388954_39	PF08401	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0388954_40	PF03869,NF010256	N/A	N/A	N/A	N/A
UniRef90	UHGV-0388954_41	UniRef90_A0A0W7TNA7	204.0	0	N/A	N/A
eggNOG-mapper	UHGV-0388954_41	272630.MexAM1_META1p3985	77.0	4.49e-17	N/A	N/A
Pfam	UHGV-0388954_41	PF18932	N/A	N/A	N/A	DUF5681
KOfam	UHGV-0388954_42	K06909	130.0	2.4e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0388954_42	phrog_979	169.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0388954_42	UniRef90_UPI0019677368	840.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0388954_42	665956.HMPREF1032_03884	791.0	0	Terminase-like family	N/A
Pfam	UHGV-0388954_42	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0388954_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0388954_42	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_44	phrog_156	83.6	2.1e-24	portal protein	head and packaging
eggNOG-mapper	UHGV-0388954_44	665956.HMPREF1032_03886	957.0	0	N/A	N/A
structural_annotation	UHGV-0388954_44	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_47	phrog_267	103.2	2.8e-30	major head protein	head and packaging
UniRef90	UHGV-0388954_47	UniRef90_A0A3A9JXK2	166.0	0	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-0388954_47	665956.HMPREF1032_03906	523.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-0388954_47	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0388954_48	PF07100,COG4288	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0388954_49	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_50	phrog_3287	141.7	5.70048e-42	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0388954_50	665956.HMPREF1032_03917	1251.0	0	N/A	N/A
structural_annotation	UHGV-0388954_50	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_51	phrog_4492	61.7	5.1e-21	tail fiber protein	tail
eggNOG-mapper	UHGV-0388954_51	665956.HMPREF1032_03918	357.0	0	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-0388954_52	phrog_24451	75.9	4.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0388954_52	1408437.JNJN01000040_gene189	76.6	2.35e-16	N/A	N/A
PHROG	UHGV-0388954_53	phrog_134	53.6	0.000000000000003	N/A	unknown function
UniRef90	UHGV-0388954_53	UniRef90_A0A372V0Q1	86.3	1.38e-21	XkdX family protein	N/A
eggNOG-mapper	UHGV-0388954_53	697281.Mahau_0596	46.2	0.0000018	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0388954_53	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0388954_53	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0388954_53	PF09693,TIGR01669	N/A	N/A	N/A	N/A
KOfam	UHGV-0388954_54	K19304	90.0	2.9e-26	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0388954_54	phrog_7767	80.9	1.3e-23	metallo-endopeptidase	other
UniRef90	UHGV-0388954_54	UniRef90_A0A0W7TLV7	497.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0388954_54	665956.HMPREF1032_00102	469.0	0	heme binding	N/A
Pfam	UHGV-0388954_54	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0388954_54	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0388954_54	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0388954_55	phrog_4105	95.3	3.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0388954_55	657322.FPR_27220	117.0	1e-32	N/A	N/A
PHROG	UHGV-0388954_56	phrog_1129	67.8	1.2e-19	holin	lysis
UniRef90	UHGV-0388954_56	UniRef90_A0A0D8J2M2	170.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0388954_56	665956.HMPREF1032_03272	155.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0388954_56	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0388954_56	PF06946	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0388954	Yes	39,629	51	99	1
UHGV-1380216	No	23,423	50	59	1
UHGV-2189821	No	19,607	54	49	1
UHGV-0162357	No	16,731	56	42	1
UHGV-0883015	No	15,176	46	38	1
UHGV-0225376	No	14,638	52	37	1
UHGV-0145323	No	13,787	52	35	1
UHGV-2166321	No	12,343	51	31	1
UHGV-2111365	No	11,739	48	29	1
UHGV-0127103	No	10,669	52	27	1