vOTU vOTU-073078

vOTU: vOTU-073078

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-073078
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255
Taxonomy (UHGV)	vFAM-00114 → vSUBFAM-02296 → vGENUS-20625 → vSUBGEN-40739 → vOTU-073078
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2064667
Biosample ID	SAMN05971684
Genome length (bp)	33,231 bps
CheckV completeness	90.42% (High-quality)
CDS count	54
CDS density	88.00%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium	Total connections	26	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2064667_1	phrog_24388	52.0	0.0000000000000063	N/A	unknown function
eggNOG-mapper	UHGV-2064667_1	1414720.CBYM010000001_gene710	114.0	1.41e-25	N/A	N/A
PHROG	UHGV-2064667_2	phrog_3558	409.8	0	tail protein	tail
UniRef90	UHGV-2064667_2	UniRef90_UPI0018A9A0AF	733.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2064667_2	1414720.CBYM010000001_gene709	400.0	0	Phage minor structural protein, N-terminal	N/A
Pfam	UHGV-2064667_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-2064667_2	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2064667_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2064667_2	PF06605,PF09931,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_3	phrog_33	70.2	2.8e-20	distal tail protein Dit	tail
UniRef90	UHGV-2064667_3	UniRef90_UPI0018A9CC06	426.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-2064667_3	1414720.CBYM010000001_gene708	216.0	0	PFAM Phage tail protein	N/A
Pfam	UHGV-2064667_3	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-2064667_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2064667_3	PF20195,PF21621,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_4	phrog_15478	79.9	1.9e-24	tail length tape measure protein	tail
UniRef90	UHGV-2064667_4	UniRef90_UPI001897835A	159.0	3.15e-37	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2064667_4	1280689.AUJC01000007_gene3308	221.0	0	tape measure	N/A
COG	UHGV-2064667_4	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-2064667_6	phrog_1021	67.0	3.2e-19	N/A	unknown function
PHROG	UHGV-2064667_7	phrog_885	76.6	2.9e-22	major tail protein	tail
eggNOG-mapper	UHGV-2064667_7	561177.ANHYDRO_01415	58.2	0.0000000711	N/A	N/A
structural_annotation	UHGV-2064667_7	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2064667_8	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_9	phrog_5	49.7	0.0000000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-2064667_9	UniRef90_UPI0018A8F3E1	127.0	7.87e-36	HK97 gp10 family phage protein	N/A
Pfam	UHGV-2064667_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-2064667_9	PF04883,TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2064667_10	1499683.CCFF01000017_gene2149	100.0	3.48e-26	N/A	N/A
structural_annotation	UHGV-2064667_10	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2064667_11	1499683.CCFF01000005_gene71	63.5	0.00000000000534	N/A	N/A
PHROG	UHGV-2064667_12	phrog_267	114.6	8.3e-34	major head protein	head and packaging
UniRef90	UHGV-2064667_12	UniRef90_A0A7V8IA85	268.0	0	Phage coat protein gp6	N/A
eggNOG-mapper	UHGV-2064667_12	1321778.HMPREF1982_03550	252.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-2064667_12	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_13	phrog_172	93.1	3.9e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-2064667_13	UniRef90_UPI0018AA774C	362.0	0	N/A	N/A
eggNOG-mapper	UHGV-2064667_13	1151292.QEW_0415	142.0	7.23e-40	N/A	N/A
Pfam	UHGV-2064667_13	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-2064667_13	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_14	phrog_115	122.8	2.8e-36	minor head protein	head and packaging
UniRef90	UHGV-2064667_14	UniRef90_UPI0018AA6954	556.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2064667_14	1499683.CCFF01000005_gene66	259.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-2064667_14	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-2064667_14	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-2064667_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2064667_14	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_15	phrog_64	274.1	0	portal protein	head and packaging
UniRef90	UHGV-2064667_15	UniRef90_UPI0018AB594C	769.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2064667_15	1499683.CCFF01000005_gene65	380.0	0	portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-2064667_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2064667_15	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_16	phrog_38	204.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-2064667_16	UniRef90_UPI001A9B46F0	1076.0	0	terminase	N/A
eggNOG-mapper	UHGV-2064667_16	1499683.CCFF01000017_gene2143	734.0	0	TIGRFAM Phage	N/A
COG	UHGV-2064667_16	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2064667_16	PF17289,PF03354,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_17	phrog_355	50.6	0.000000000000026	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2064667_17	UniRef90_UPI001F3ECC8A	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-2064667_17	1415774.U728_1667	159.0	0	N/A	N/A
Pfam	UHGV-2064667_17	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-2064667_17	PF14359	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_18	phrog_2538	87.4	1.5e-25	terminase small subunit	head and packaging
UniRef90	UHGV-2064667_18	UniRef90_UPI0018AA9760	257.0	0	phBC6A51 family helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-2064667_18	1540257.JQMW01000013_gene750	120.0	5.4e-33	N/A	N/A
Pfam	UHGV-2064667_18	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-2064667_18	PF13022,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-2064667_27	K02316	63.9	2.5e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-2064667_27	phrog_26824	236.5	0	N/A	unknown function
UniRef90	UHGV-2064667_27	UniRef90_UPI0018A9C7CA	1322.0	0	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-2064667_27	318464.IO99_17950	597.0	0	DNA primase	N/A
PADLOC	UHGV-2064667_27	drt-cluster192	57.3	1.4e-19	DRT	DRT
Pfam	UHGV-2064667_27	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-2064667_27	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-2064667_27	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-2064667_27	PF08706,PF05272,PF19898,MF_00974,MF_00016,NF005477,COG3378	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2064667_28	PF20027	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_29	phrog_323	89.2	4.1e-33	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2064667_29	UniRef90_A0A0E1KXC2	136.0	3.05e-35	Bacterial regulatory, arsR family protein	N/A
eggNOG-mapper	UHGV-2064667_29	756499.Desde_1065	138.0	1.01e-35	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-2064667_29	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-2064667_29	PF13936,NF040595,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_32	phrog_3490	167.5	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2064667_32	UniRef90_UPI0018A8EF5C	322.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2064667_32	673376.F2VHU9_9CAUD	167.0	0	nuclease activity	N/A
Pfam	UHGV-2064667_32	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-2064667_32	PF02732,NF040956	N/A	N/A	N/A	N/A
KOfam	UHGV-2064667_34	K03111	109.1	6.8e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2064667_34	phrog_44	125.9	3.2e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2064667_34	UniRef90_UPI001A9B76EB	226.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2064667_34	1391647.AVSV01000022_gene2534	125.0	2.62e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-2064667_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2064667_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2064667_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2064667_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2064667_34	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_36	phrog_14970	273.0	0	N/A	unknown function
UniRef90	UHGV-2064667_36	UniRef90_A0A3P6JH63	229.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-2064667_36	411470.RUMGNA_02193	209.0	0	double-strand break repair protein	N/A
COG	UHGV-2064667_36	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-2064667_36	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_37	phrog_2205	116.5	1.5e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2064667_37	UniRef90_A0A174EZ57	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-2064667_37	1415774.U728_1122	144.0	5.04047e-42	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-2064667_37	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
KOfam	UHGV-2064667_39	K03091	84.4	2.1e-24	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-2064667_39	phrog_351	67.7	1.3e-21	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-2064667_39	UniRef90_UPI0018A910E7	321.0	0	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-2064667_39	747365.Thena_0009	73.6	0.000000000000197	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	N/A
Pfam	UHGV-2064667_39	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-2064667_39	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-2064667_39	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-2064667_39	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-2064667_39	PF04542,PF08281,MF_00962,NF006158,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-2064667_43	K18830	64.4	2.2e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2064667_43	phrog_8	48.5	0.000000000000059	transcriptional regulator	transcription regulation
UniRef90	UHGV-2064667_43	UniRef90_A0A1C6JIL6	219.0	0	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-2064667_43	1414720.CBYM010000002_gene594	109.0	2.81e-29	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2064667_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2064667_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2064667_43	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2064667_45	K22299	43.5	0.0000000000065	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-2064667_45	phrog_3	48.4	0.00000000000037	transcriptional repressor	transcription regulation
UniRef90	UHGV-2064667_45	UniRef90_A0A1C6KN99	74.7	2.55e-16	Transcriptional regulator, y4mF family	N/A
eggNOG-mapper	UHGV-2064667_45	913865.DOT_2640	48.1	0.00000182	Transcriptional	N/A
PADLOC	UHGV-2064667_45	retron_type_VI_hth_cluster2_1	50.6	0.000000000000057	N/A	Retron
Pfam	UHGV-2064667_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2064667_45	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2064667_45	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_46	phrog_11718	73.7	9.1e-22	N/A	unknown function
UniRef90	UHGV-2064667_46	UniRef90_A0A1C6KNM2	697.0	0	DnaA_N domain-containing protein	N/A
eggNOG-mapper	UHGV-2064667_46	1334046.AYTB01000008_gene2295	84.7	0.00000000000000113	N/A	N/A
Pfam	UHGV-2064667_46	PF11638	N/A	N/A	DnaA N-terminal domain	DnaA_N
COG	UHGV-2064667_46	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2064667_46	PF11638,PF07261	N/A	N/A	N/A	N/A
KOfam	UHGV-2064667_47	K18640	119.7	3.5e-35	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-2064667_47	phrog_691	149.4	2.24208e-44	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2064667_47	UniRef90_A0A1C6JGT4	595.0	0	ALP_N domain-containing protein	N/A
eggNOG-mapper	UHGV-2064667_47	1582152.A0A0A8WI45_9CAUD	347.0	0	N/A	N/A
Pfam	UHGV-2064667_47	PF17989	N/A	N/A	Actin like proteins N terminal domain	ALP_N
structural_annotation	UHGV-2064667_47	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
PHROG	UHGV-2064667_48	phrog_14888	45.5	0.00000000000038	N/A	unknown function
eggNOG-mapper	UHGV-2064667_50	573061.Clocel_2949	68.6	0.000000000000125	N/A	N/A
structural_annotation	UHGV-2064667_50	PF05171,TIGR04108,COG3721	N/A	N/A	N/A	N/A
KOfam	UHGV-2064667_51	K14060	150.2	1.54143e-44	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-2064667_51	phrog_125	164.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2064667_51	UniRef90_A0A1C6KN84	360.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-2064667_51	1414720.CBYM010000017_gene3117	339.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-2064667_51	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-2064667_51	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2064667_51	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-2064667_52	K01447	118.6	7.7e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2064667_52	phrog_670	140.6	1.6e-41	endolysin	lysis
UniRef90	UHGV-2064667_52	UniRef90_L1QL49	451.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2064667_52	545697.HMPREF0216_00781	451.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2064667_52	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2064667_52	COG2931	N/A	N/A	Ca2+-binding protein, RTX toxin-related	N/A
PHROG	UHGV-2064667_53	phrog_199	100.9	1.2e-29	holin	lysis
UniRef90	UHGV-2064667_53	UniRef90_UPI0018AA2B72	262.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-2064667_53	1414720.CBYM010000040_gene1662	230.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-2064667_53	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2064667_53	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2064667_53	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2064667_53	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2064667	Yes	33,231	29	90	1