vOTU vOTU-073107

vOTU: vOTU-073107

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-073107
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-06592 → vSUBGEN-04543 → vOTU-073107
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter_A → Mediterraneibacter_A butyricigenes
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0181641
Biosample ID	SAMEA2580140
Genome length (bp)	32,938 bps
CheckV completeness	92.71% (High-quality)
CDS count	60
CDS density	89.33%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter_A → Mediterraneibacter_A butyricigenes	Total connections	19	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0181641_1	phrog_5110	83.6	1.7e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0181641_1	UniRef90_A0A1C5LZF0	92.0	4.91e-22	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0181641_1	349161.Dred_2608	68.2	0.000000000000102	N/A	N/A
structural_annotation	UHGV-0181641_1	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_2	phrog_9	251.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0181641_2	UniRef90_D4M588	987.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0181641_2	1232452.BAIB02000007_gene1629	523.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0181641_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0181641_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0181641_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0181641_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_3	phrog_12	78.0	8.8e-23	portal protein	head and packaging
UniRef90	UHGV-0181641_3	UniRef90_A0A844KEF3	464.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0181641_3	1232452.BAIB02000007_gene1627	275.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0181641_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0181641_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0181641_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0181641_4	K01358	165.6	0	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0181641_4	phrog_94	234.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0181641_4	UniRef90_UPI00156EEE56	327.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0181641_4	1232452.BAIB02000007_gene1626	273.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0181641_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0181641_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0181641_4	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_5	phrog_10	79.2	4.9e-23	major head protein	head and packaging
UniRef90	UHGV-0181641_5	UniRef90_D4M591	636.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0181641_5	1232452.BAIB02000007_gene1625	491.0	0	Phage capsid family	N/A
Pfam	UHGV-0181641_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0181641_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0181641_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0181641_5	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181641_7	UniRef90_UPI00189B1559	172.0	0	phage head closure protein	N/A
NCBIFam	UHGV-0181641_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0181641_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181641_8	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_9	phrog_5	54.6	0.000000000000003	tail completion or Neck1 protein	connector
UniRef90	UHGV-0181641_9	UniRef90_D4M595	189.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0181641_9	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0181641_9	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_10	phrog_88	100.3	1.7e-29	major tail protein	tail
UniRef90	UHGV-0181641_10	UniRef90_UPI0006C1EB28	295.0	0	phage tail protein	N/A
Pfam	UHGV-0181641_10	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0181641_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0181641_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_12	phrog_1272	213.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0181641_12	UniRef90_UPI0006C3C180	855.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0181641_12	1035184.HMPREF1042_1328	345.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0181641_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0181641_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0181641_13	phrog_33	76.2	6.8e-22	distal tail protein Dit	tail
UniRef90	UHGV-0181641_13	UniRef90_A0A844KEE5	240.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0181641_13	1232452.BAIB02000007_gene1615	201.0	0	phage tail	N/A
Pfam	UHGV-0181641_13	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0181641_13	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0181641_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0181641_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_14	phrog_13289	379.5	0	tail protein	tail
UniRef90	UHGV-0181641_14	UniRef90_D4M5A0	810.0	0	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0181641_14	1235798.C817_02568	465.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0181641_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0181641_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0181641_14	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0181641_14	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_15	phrog_14030	122.5	3e-36	N/A	unknown function
UniRef90	UHGV-0181641_15	UniRef90_A0A6N3GME3	149.0	7.78982e-42	Ricin-type beta-trefoil lectin domain protein	N/A
eggNOG-mapper	UHGV-0181641_15	1232452.BAIB02000007_gene1613	139.0	2.48e-38	NlpC/P60 family	N/A
Pfam	UHGV-0181641_15	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0181641_15	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
UniRef90	UHGV-0181641_16	UniRef90_A0A374E9Q0	82.8	0.00000000000000253	Collagen-like protein	N/A
structural_annotation	UHGV-0181641_16	PF10651,NF007636,COG5456	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181641_17	1007096.BAGW01000036_gene2668	74.3	0.000000000000342	N/A	N/A
KOfam	UHGV-0181641_19	K03733	215.3	0	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0181641_19	phrog_1	166.2	0	integrase	integration and excision
UniRef90	UHGV-0181641_19	UniRef90_A0A391PEE2	612.0	0	Phage integrase	N/A
eggNOG-mapper	UHGV-0181641_19	411468.CLOSCI_02414	470.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0181641_19	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0181641_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0181641_19	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0181641_19	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_21	phrog_4105	80.5	6.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0181641_21	411459.RUMOBE_00911	136.0	3.69e-40	N/A	N/A
PHROG	UHGV-0181641_22	phrog_1129	87.2	1e-25	holin	lysis
UniRef90	UHGV-0181641_22	UniRef90_UPI00051B7422	149.0	4.2039e-45	phage holin family protein	N/A
eggNOG-mapper	UHGV-0181641_22	1121115.AXVN01000006_gene2171	142.0	3.69943e-43	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0181641_22	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0181641_22	PF16079	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181641_23	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-0181641_24	K07273	198.6	0	acm; lysozyme	N/A
PHROG	UHGV-0181641_24	phrog_291	155.5	0	endolysin	lysis
UniRef90	UHGV-0181641_24	UniRef90_UPI0008D932EA	279.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0181641_24	33035.JPJF01000043_gene994	229.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0181641_24	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0181641_24	PF07538	N/A	N/A	Clostridial hydrophobic W	ChW
COG	UHGV-0181641_24	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0181641_24	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-0181641_25	K14059	143.2	3.20057e-42	int; integrase	N/A
PHROG	UHGV-0181641_25	phrog_1	131.2	9.2e-39	integrase	integration and excision
UniRef90	UHGV-0181641_25	UniRef90_A0A4R3K6N9	522.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0181641_25	1304866.K413DRAFT_1180	352.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0181641_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0181641_25	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0181641_25	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0181641_26	K14623	363.4	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0181641_26	phrog_8036	385.7	0	N/A	unknown function
UniRef90	UHGV-0181641_26	UniRef90_A0A414UZM1	454.0	0	DNA damage-inducible protein D	N/A
eggNOG-mapper	UHGV-0181641_26	665950.HMPREF1025_02565	446.0	0	N/A	N/A
AcrCatalog	UHGV-0181641_26	cluster_17589	144.0	6.02558e-43	NA	N/A
PADLOC	UHGV-0181641_26	Specificity_I_00032	340.6	0	Type I specificity subunit	RM
Pfam	UHGV-0181641_26	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-0181641_26	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-0181641_26	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0181641_26	PF09669,NF008573,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0181641_27	K23779	52.7	0.000000000000011	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
UniRef90	UHGV-0181641_27	UniRef90_UPI000E486504	99.4	3.84e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0181641_27	411461.DORFOR_01128	73.6	1.07e-16	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0181641_27	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0181641_27	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181641_29	UniRef90_A0A3E5GPF5	222.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0181641_29	397290.C810_05152	73.2	0.00000000000000535	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0181641_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0181641_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0181641_29	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_33	phrog_478	117.9	4.7e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0181641_33	UniRef90_A0A0U2WUA4	161.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0181641_33	665956.HMPREF1032_03082	180.0	0	N/A	N/A
UniRef90	UHGV-0181641_34	UniRef90_A0A3E4LWT8	73.6	0.00000000000000193	HTH psq-type domain-containing protein	N/A
Pfam	UHGV-0181641_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0181641_34	PF13744,MF_00535,NF010465,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_42	phrog_72	52.1	0.0000000000000017	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0181641_42	411490.ANACAC_00804	130.0	1.37e-35	N/A	N/A
structural_annotation	UHGV-0181641_42	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_43	phrog_7566	80.5	1.5e-23	N/A	unknown function
UniRef90	UHGV-0181641_43	UniRef90_A0A373MWE5	159.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0181641_43	1304866.K413DRAFT_1198	65.5	0.00000000000133	N/A	N/A
PHROG	UHGV-0181641_45	phrog_15768	111.2	1.1e-32	N/A	unknown function
UniRef90	UHGV-0181641_45	UniRef90_UPI001C00EC79	134.0	1.22e-34	N/A	N/A
eggNOG-mapper	UHGV-0181641_45	1121344.JHZO01000003_gene982	114.0	4.22e-28	N/A	N/A
AcrCatalog	UHGV-0181641_45	cluster_14472	128.0	1.37e-37	NA	N/A
Pfam	UHGV-0181641_45	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0181641_45	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_46	phrog_15077	187.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0181641_46	1235800.C819_02581	119.0	7.99e-30	N/A	N/A
eggNOG-mapper	UHGV-0181641_48	411461.DORFOR_00012	70.9	0.0000000000000635	N/A	N/A
PHROG	UHGV-0181641_49	phrog_26445	93.5	1.5e-27	N/A	unknown function
UniRef90	UHGV-0181641_49	UniRef90_A0A412MF67	91.7	1.53e-20	DNA-binding response regulator	N/A
eggNOG-mapper	UHGV-0181641_49	97139.C824_00034	90.5	9.21e-22	N/A	N/A
structural_annotation	UHGV-0181641_49	PF00196	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_50	phrog_20593	49.6	0.000000000000077	N/A	unknown function
eggNOG-mapper	UHGV-0181641_52	568816.Acin_1246	61.6	0.000000000304	N/A	N/A
UniRef90	UHGV-0181641_53	UniRef90_A0A3R6NW84	134.0	7.67e-37	N/A	N/A
eggNOG-mapper	UHGV-0181641_53	1256908.HMPREF0373_00667	111.0	5.2e-30	N/A	N/A
Pfam	UHGV-0181641_53	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0181641_53	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0181641_57	phrog_36	73.1	4.6e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0181641_57	UniRef90_UPI001899709D	124.0	1.66e-33	N/A	N/A
eggNOG-mapper	UHGV-0181641_57	1235799.C818_04213	119.0	1.78e-32	sigma factor activity	N/A
COG	UHGV-0181641_57	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0181641_57	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181641_58	UniRef90_A0A8I0AQA2	87.0	3.88e-21	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0181641_58	1007096.BAGW01000035_gene1350	72.8	2.76e-16	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0181641_58	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0181641_58	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0181641_60	K07451	43.8	0.0000000000045	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0181641_60	phrog_119	74.8	1.1e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181641_60	UniRef90_A0A1Q6K9L9	196.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0181641_60	1232452.BAIB02000007_gene1631	97.4	2.72e-24	HNH nucleases	N/A
Pfam	UHGV-0181641_60	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0181641_60	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0181641	Yes	32,938	43	93	1
UHGV-2039704	No	23,960	43	67	1
UHGV-1713227	No	13,962	44	39	1