vOTU vOTU-073124

vOTU: vOTU-073124

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-073124
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-00170 → vGENUS-00088 → vSUBGEN-43549 → vOTU-073124
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1386413
Biosample ID	SAMEA2149030
Genome length (bp)	40,656 bps
CheckV completeness	90.43% (High-quality)
CDS count	67
CDS density	90.27%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	249	Host agreement	97.59
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	56	Host agreement	82.14

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1386413_2	UniRef90_UPI001D14AAA4	71.6	0.0000000000000274	N/A	N/A
KOfam	UHGV-1386413_5	K04763	135.8	4.5e-40	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1386413_5	phrog_1	118.3	7.4e-35	integrase	integration and excision
UniRef90	UHGV-1386413_5	UniRef90_A0A395W9T7	570.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1386413_5	999413.HMPREF1094_02021	224.0	0	Phage integrase family	N/A
Pfam	UHGV-1386413_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1386413_5	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1386413_5	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_8	phrog_428	141.7	5.59959e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1386413_8	UniRef90_A0A395WBX6	416.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1386413_8	279808.SH2379	147.0	3.25999e-40	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1386413_8	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1386413_8	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1386413_8	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1386413_8	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-1386413_9	K02315	121.2	1.1e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1386413_9	phrog_50	109.0	5.1e-32	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1386413_9	UniRef90_A0A395WER8	545.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-1386413_9	1232446.BAIE02000011_gene1611	133.0	4.47e-35	N/A	N/A
Pfam	UHGV-1386413_9	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-1386413_9	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1386413_9	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-1386413_12	K00390	81.3	7.3e-24	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1386413_12	phrog_424	99.7	2.7e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1386413_12	UniRef90_A0A374RXA8	398.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1386413_12	1410650.JHWL01000037_gene595	281.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1386413_12	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1386413_12	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1386413_12	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386413_13	PF11184	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_14	phrog_954	247.9	0	DNA methyltransferase	other
UniRef90	UHGV-1386413_14	UniRef90_A0A413UEW6	339.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-1386413_14	1321779.HMPREF1984_00119	250.0	0	methyltransferase	N/A
PADLOC	UHGV-1386413_14	MTase_II_00074	248.2	0	Type II methyltransferase	RM
COG	UHGV-1386413_14	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-1386413_14	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386413_16	PF17399	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_17	phrog_15198	41.3	0.000000000011	N/A	unknown function
UniRef90	UHGV-1386413_17	UniRef90_A0A395WBY6	132.0	8.03e-37	N/A	N/A
structural_annotation	UHGV-1386413_20	PF11061	N/A	N/A	N/A	N/A
UniRef90	UHGV-1386413_24	UniRef90_A0A413UEX6	290.0	0	N/A	N/A
Pfam	UHGV-1386413_24	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1386413_24	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386413_26	PF10879	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_27	phrog_2316	41.5	0.00000000002	N/A	unknown function
UniRef90	UHGV-1386413_27	UniRef90_A0A3E4YBW5	123.0	1.55e-34	N/A	N/A
eggNOG-mapper	UHGV-1386413_27	1280676.AUJO01000024_gene3262	64.3	0.00000000000507	N/A	N/A
structural_annotation	UHGV-1386413_27	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_28	phrog_4525	66.0	6.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-1386413_33	1403948.Q618_VCMC00003G0140	103.0	3.7e-25	N/A	N/A
PHROG	UHGV-1386413_37	phrog_2059	104.1	1.6e-30	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1386413_37	UniRef90_A0A395WEU5	277.0	0	Antirestriction protein ArdA	N/A
eggNOG-mapper	UHGV-1386413_37	511680.BUTYVIB_00697	107.0	8.6e-25	N/A	N/A
Pfam	UHGV-1386413_37	PF07275	N/A	N/A	Antirestriction protein (ArdA)	ArdA
dbAPIS	UHGV-1386413_37	APIS003	N/A	N/A	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	N/A
COG	UHGV-1386413_37	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-1386413_37	PF07275,COG4734	N/A	N/A	N/A	N/A
UniRef90	UHGV-1386413_38	UniRef90_A0A374RVC6	124.0	5.68e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1386413_38	1145276.T479_12115	49.7	0.000000361	Helix-turn-helix domain	N/A
structural_annotation	UHGV-1386413_38	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_39	phrog_119	58.2	1.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1386413_39	UniRef90_A0A395WA48	263.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1386413_39	1211814.CAPG01000074_gene3460	67.8	0.000000000000479	HNH endonuclease	N/A
Pfam	UHGV-1386413_39	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1386413_39	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1386413_40	phrog_361	74.5	1.2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1386413_40	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1386413_40	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-1386413_40	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1386413_40	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1386413_40	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_41	phrog_9	308.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1386413_41	UniRef90_A0A395WD03	1124.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1386413_41	742740.HMPREF9474_04307	549.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-1386413_41	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1386413_41	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1386413_41	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1386413_41	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_42	phrog_12	107.4	9.7e-32	portal protein	head and packaging
UniRef90	UHGV-1386413_42	UniRef90_A0A395W9X2	822.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1386413_42	1203606.HMPREF1526_01337	290.0	0	Portal protein	N/A
Pfam	UHGV-1386413_42	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1386413_42	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1386413_42	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1386413_43	K06904	88.5	8.7e-26	N/A	N/A
PHROG	UHGV-1386413_43	phrog_80	119.2	5e-35	head maturation protease	head and packaging
UniRef90	UHGV-1386413_43	UniRef90_A0A413UET6	352.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1386413_43	411470.RUMGNA_02064	174.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1386413_43	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1386413_43	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1386413_43	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1386413_43	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_44	phrog_10	82.8	4.4e-24	major head protein	head and packaging
UniRef90	UHGV-1386413_44	UniRef90_A0A395WF70	800.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1386413_44	1536774.H70357_10630	167.0	3.36312e-44	Phage capsid family	N/A
Pfam	UHGV-1386413_44	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1386413_44	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1386413_44	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1386413_44	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_45	phrog_5223	46.9	0.00000000000036	neck protein	connector
UniRef90	UHGV-1386413_45	UniRef90_A0A374RXD1	77.8	1.02e-16	DNA-packaging protein	N/A
structural_annotation	UHGV-1386413_45	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_46	phrog_1951	71.9	6e-21	head-tail adaptor	connector
UniRef90	UHGV-1386413_46	UniRef90_A0A395WC07	221.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1386413_46	1243664.CAVL020000054_gene3020	60.1	0.000000000276	head-tail adaptor	N/A
NCBIFam	UHGV-1386413_46	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1386413_46	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1386413_46	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386413_47	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1386413_48	UniRef90_A0A374RUJ8	142.0	7.14999e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1386413_48	86416.Clopa_0344	57.8	0.00000000894	N/A	N/A
structural_annotation	UHGV-1386413_48	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_49	phrog_88	144.8	3.9937e-43	major tail protein	tail
UniRef90	UHGV-1386413_49	UniRef90_A0A395WA58	390.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1386413_49	1033744.CAEL01000029_gene1276	154.0	1.26117e-44	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1386413_49	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1386413_49	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386413_50	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1386413_52	K20282	63.7	1.1e-19	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-1386413_52	phrog_13339	334.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1386413_52	UniRef90_A0A395WD11	946.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1386413_52	423476.A3F654_9CAUD	244.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-1386413_52	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1386413_52	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
structural_annotation	UHGV-1386413_52	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_53	phrog_33	53.2	0.0000000000000069	distal tail protein Dit	tail
UniRef90	UHGV-1386413_53	UniRef90_A0A1C6JHE5	62.8	0.000000041	Phage-related protein	N/A
Pfam	UHGV-1386413_53	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1386413_53	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1386413_53	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1386413_53	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_54	phrog_1067	47.9	2e-23	minor head protein	head and packaging
eggNOG-mapper	UHGV-1386413_54	1232446.BAIE02000002_gene836	57.4	0.00000902	Phage minor structural protein	N/A
Pfam	UHGV-1386413_54	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
NCBIFam	UHGV-1386413_54	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1386413_54	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1386413_54	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386413_55	PF10651,COG5513	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386413_56	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1386413_57	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
KOfam	UHGV-1386413_58	K01051	66.1	3.3e-19	E3.1.1.11; pectinesterase [EC:3.1.1.11]	N/A
UniRef90	UHGV-1386413_58	UniRef90_UPI001D0919FE	585.0	0	pectinesterase family protein	N/A
Pfam	UHGV-1386413_58	PF01095	N/A	N/A	Pectinesterase	Pectinesterase
COG	UHGV-1386413_58	COG4677	N/A	N/A	Pectin methylesterase and related acyl-CoA thioesterases	N/A
structural_annotation	UHGV-1386413_58	PF01095,PF10651,PF17994,NF041896,COG4677,COG3470	N/A	N/A	N/A	N/A
UniRef90	UHGV-1386413_63	UniRef90_A0A8F0WFQ8	69.7	0.000000000103	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-1386413_63	476272.RUMHYD_01770	112.0	4.98e-28	N/A	N/A
PHROG	UHGV-1386413_64	phrog_20016	66.6	2.7e-19	N/A	unknown function
UniRef90	UHGV-1386413_64	UniRef90_A0A395WF88	267.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1386413_64	1226322.HMPREF1545_00077	60.1	0.00000000162	N/A	N/A
Pfam	UHGV-1386413_64	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-1386413_64	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_66	phrog_443	51.7	0.000000000000021	holin	lysis
UniRef90	UHGV-1386413_66	UniRef90_A0A2U2ELA1	77.4	2.73e-17	Membrane protein	N/A
eggNOG-mapper	UHGV-1386413_66	476272.RUMHYD_01759	84.3	1.13e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1386413_66	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1386413_66	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1386413_67	phrog_8781	47.7	0.00000000000021	endolysin	lysis
UniRef90	UHGV-1386413_67	UniRef90_R9LNW5	197.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-1386413_67	1235796.C815_01769	197.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1386413_67	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1386413_67	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1386413_67	TIGR02594,COG3942	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1386413	Yes	40,656	33	90	1
UHGV-1701601	No	18,780	34	42	1
UHGV-1768559	No	15,555	35	35	1
UHGV-1773542	No	15,542	35	35	1
UHGV-1696651	No	12,882	35	29	1