vOTU vOTU-073199

vOTU: vOTU-073199

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-073199
Number of genomes	11
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00971 → vGENUS-04563 → vSUBGEN-02657 → vOTU-073199
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2128999
Biosample ID	SAMEA3449276
Genome length (bp)	35,602 bps
CheckV completeness	91.21% (High-quality)
CDS count	49
CDS density	94.11%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	77	Host agreement	98.7
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	89	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.21)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2128999_1	phrog_1129	68.6	6.2e-20	holin	lysis
UniRef90	UHGV-2128999_1	UniRef90_A0A0D8J2M2	177.0	0	Enolase	N/A
eggNOG-mapper	UHGV-2128999_1	665956.HMPREF1032_03272	155.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-2128999_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2128999_1	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_2	phrog_1863	75.6	3.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-2128999_2	665956.HMPREF1032_02709	152.0	0	N/A	N/A
KOfam	UHGV-2128999_3	K19304	49.1	0.000000000000073	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
UniRef90	UHGV-2128999_3	UniRef90_G9RT42	546.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-2128999_3	665956.HMPREF1032_02708	546.0	0	N/A	N/A
Pfam	UHGV-2128999_3	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
structural_annotation	UHGV-2128999_3	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2128999_4	PF11514	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2128999_6	665956.HMPREF1032_03918	85.1	1.35e-17	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-2128999_7	phrog_18725	56.3	5.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-2128999_7	693746.OBV_18220	65.1	0.0000000000273	N/A	N/A
PHROG	UHGV-2128999_8	phrog_32744	163.9	0	N/A	unknown function
eggNOG-mapper	UHGV-2128999_8	411902.CLOBOL_00124	246.0	0	N/A	N/A
structural_annotation	UHGV-2128999_8	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_9	phrog_1194	62.5	6.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-2128999_9	411902.CLOBOL_00125	105.0	1.52e-27	N/A	N/A
structural_annotation	UHGV-2128999_9	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_10	phrog_1535	115.1	0	tail length tape measure protein	tail
UniRef90	UHGV-2128999_10	UniRef90_A0A1C6JAZ8	148.0	4.43e-33	Phage-related protein	N/A
eggNOG-mapper	UHGV-2128999_10	665956.HMPREF1032_03057	594.0	0	tape measure	N/A
COG	UHGV-2128999_10	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_11	phrog_706	95.1	7.8e-28	N/A	unknown function
UniRef90	UHGV-2128999_11	UniRef90_UPI0013141117	223.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2128999_11	665956.HMPREF1032_03058	284.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2128999_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2128999_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_12	phrog_11299	81.6	9.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-2128999_12	665956.HMPREF1032_03059	177.0	0	N/A	N/A
structural_annotation	UHGV-2128999_12	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_13	phrog_3099	62.0	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-2128999_13	665956.HMPREF1032_03060	293.0	0	N/A	N/A
structural_annotation	UHGV-2128999_13	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_14	phrog_3266	76.8	2.4e-22	tail completion	connector
eggNOG-mapper	UHGV-2128999_14	525255.HMPREF0077_0380	59.3	0.0000000031	N/A	N/A
structural_annotation	UHGV-2128999_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_15	phrog_556	107.1	1e-31	minor head protein	head and packaging
UniRef90	UHGV-2128999_15	UniRef90_UPI001958E7C1	127.0	3.3e-35	minor capsid protein	N/A
eggNOG-mapper	UHGV-2128999_15	665956.HMPREF1032_03062	131.0	9.91e-38	Minor capsid protein	N/A
Pfam	UHGV-2128999_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2128999_15	PF11114	N/A	N/A	N/A	N/A
Pfam	UHGV-2128999_16	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-2128999_16	PF20536,COG1853	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_17	phrog_541	63.9	2.4e-18	head-tail adaptor	connector
PHROG	UHGV-2128999_18	phrog_267	85.5	6e-25	major head protein	head and packaging
UniRef90	UHGV-2128999_18	UniRef90_A0A4P8IA69	342.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-2128999_18	748224.HMPREF9436_03335	402.0	0	N/A	N/A
structural_annotation	UHGV-2128999_18	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_19	phrog_194	110.4	1.9e-32	head scaffolding protein	head and packaging
UniRef90	UHGV-2128999_19	UniRef90_A0A413FZA0	127.0	6.52e-34	Phage capsid protein	N/A
eggNOG-mapper	UHGV-2128999_19	411471.SUBVAR_06994	122.0	1.43e-32	Phage minor structural protein GP20	N/A
Pfam	UHGV-2128999_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2128999_19	PF06810	N/A	N/A	N/A	N/A
KOfam	UHGV-2128999_22	K11044	51.3	0.0000000000000062	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-2128999_22	phrog_581	338.7	0	minor head protein	head and packaging
UniRef90	UHGV-2128999_22	UniRef90_UPI0019688325	1122.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-2128999_22	718252.FP2_06690	483.0	0	N/A	N/A
Pfam	UHGV-2128999_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-2128999_22	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-2128999_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2128999_22	PF06152,PF03496,MF_04139,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_23	phrog_533	271.8	0	portal protein	head and packaging
UniRef90	UHGV-2128999_23	UniRef90_A0A7G9WF85	457.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2128999_23	718252.FP2_06700	474.0	0	N/A	N/A
structural_annotation	UHGV-2128999_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2128999_24	K06909	84.5	1.5e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2128999_24	phrog_2	113.9	2.3e-33	terminase large subunit	head and packaging
UniRef90	UHGV-2128999_24	UniRef90_UPI0019684892	859.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2128999_24	1449050.JNLE01000003_gene3895	385.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2128999_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-2128999_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2128999_24	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_25	phrog_2412	93.2	2.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-2128999_25	742738.HMPREF9460_02504	128.0	4.18e-36	N/A	N/A
PHROG	UHGV-2128999_26	phrog_36	52.9	0.0000000000000078	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-2128999_26	445972.ANACOL_03353	58.2	0.00000000957	N/A	N/A
structural_annotation	UHGV-2128999_26	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-2128999_31	K01160	46.4	0.00000000000099	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2128999_31	phrog_140	127.4	8.6e-38	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2128999_31	UniRef90_A0A0N9ZSQ9	122.0	1.21e-32	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2128999_31	665956.HMPREF1032_03604	305.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2128999_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2128999_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2128999_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-2128999_32	UniRef90_G9RRK1	387.0	0	N/A	N/A
Pfam	UHGV-2128999_32	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-2128999_32	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-2128999_33	phrog_36563	79.3	5.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-2128999_33	665956.HMPREF1032_03602	341.0	0	N/A	N/A
KOfam	UHGV-2128999_34	K06167	73.8	2.4e-21	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-2128999_34	phrog_392	190.4	0	metal-dependent hydrolase	other
UniRef90	UHGV-2128999_34	UniRef90_UPI001066B38E	458.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-2128999_34	665956.HMPREF1032_03601	407.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-2128999_34	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-2128999_34	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-2128999_34	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_35	phrog_2185	295.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2128999_35	UniRef90_A0A4R1QSH1	417.0	0	RecT family protein	N/A
eggNOG-mapper	UHGV-2128999_35	665956.HMPREF1032_03600	724.0	0	N/A	N/A
KOfam	UHGV-2128999_36	K19171	98.5	5.4e-29	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-2128999_36	phrog_77	201.2	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2128999_36	UniRef90_G9RRJ7	1209.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-2128999_36	665956.HMPREF1032_03599	1209.0	0	nuclear chromosome segregation	N/A
COG	UHGV-2128999_36	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2128999_36	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_38	phrog_1733	54.6	0.0000000000000011	N/A	unknown function
UniRef90	UHGV-2128999_38	UniRef90_UPI001967A828	1622.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-2128999_38	665956.HMPREF1032_03597	1276.0	0	DNA binding	N/A
COG	UHGV-2128999_38	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2128999_38	PF03677	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_40	phrog_8	49.0	0.00000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-2128999_40	UniRef90_UPI00196862CC	350.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-2128999_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2128999_40	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2128999_40	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_43	phrog_66	40.4	0.000000000071	excisionase and transcriptional regulator	integration and excision
UniRef90	UHGV-2128999_43	UniRef90_G9RRJ1	130.0	2.37e-38	Excisionase family DNA binding domain-containing protein	N/A
eggNOG-mapper	UHGV-2128999_43	1218173.BALCAV_0221205	46.6	0.00000516	Helix-turn-helix domain	N/A
Pfam	UHGV-2128999_43	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-2128999_43	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
UniRef90	UHGV-2128999_44	UniRef90_A0A3A6JSY4	259.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2128999_44	394503.Ccel_3076	62.4	0.0000000000855	Cro/C1-type HTH DNA-binding domain	N/A
COG	UHGV-2128999_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2128999_44	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2128999_45	phrog_1914	70.0	1.4e-20	N/A	unknown function
UniRef90	UHGV-2128999_45	UniRef90_G9RRJ0	392.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-2128999_45	665956.HMPREF1032_03592	392.0	0	N/A	N/A
Pfam	UHGV-2128999_45	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2128999_45	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2128999_45	PF06114,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2128999_46	665956.HMPREF1032_03591	377.0	0	N/A	N/A
PHROG	UHGV-2128999_47	phrog_5783	283.7	0	N/A	unknown function
UniRef90	UHGV-2128999_47	UniRef90_G9RRI8	450.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-2128999_47	665956.HMPREF1032_03590	450.0	0	NYN domain	N/A
Pfam	UHGV-2128999_47	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-2128999_47	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-2128999_47	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
KOfam	UHGV-2128999_48	K06400	321.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2128999_48	phrog_95	308.1	0	integrase	integration and excision
UniRef90	UHGV-2128999_48	UniRef90_UPI00106696FE	1063.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-2128999_48	665956.HMPREF1032_03589	1051.0	0	N/A	N/A
Pfam	UHGV-2128999_48	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2128999_48	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2128999_48	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2128999_48	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2128999_48	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-2128999_49	UniRef90_UPI00139E5E2D	553.0	0	N/A	N/A
eggNOG-mapper	UHGV-2128999_49	665956.HMPREF1032_01909	561.0	0	N/A	N/A
Pfam	UHGV-2128999_49	PF19553	N/A	N/A	N/A	DUF6076

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2128999	Yes	35,602	54	91	1
UHGV-0089841	No	32,816	54	84	1
UHGV-0182533	No	32,547	53	84	1
UHGV-1984662	No	23,419	54	59	1
UHGV-0131771	No	23,370	54	59	1
UHGV-0070351	No	18,727	53	48	1
UHGV-1582841	No	17,028	56	47	1
UHGV-1643637	No	16,137	56	44	1
UHGV-1731254	No	15,146	56	38	1
UHGV-0086161	No	11,334	52	29	1
UHGV-1943505	No	11,214	56	26	1