vOTU vOTU-073352

vOTU: vOTU-073352

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-073352
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01504 → vGENUS-01515 → vSUBGEN-20788 → vOTU-073352
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0023752
Biosample ID	SAMEA4766111
Genome length (bp)	34,351 bps
CheckV completeness	91.39% (High-quality)
CDS count	57
CDS density	90.36%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	8	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.39)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0023752_1	phrog_4433	176.3	0	N/A	unknown function
UniRef90	UHGV-0023752_1	UniRef90_A0A6M5C839	119.0	2.98e-31	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0023752_1	33035.JPJF01000122_gene2458	164.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0023752_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0023752_2	phrog_2514	87.9	1.1e-25	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0023752_2	397291.C804_01603	113.0	1.46e-28	DnaD domain protein	N/A
COG	UHGV-0023752_2	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0023752_2	PF07106,MF_01177,TIGR01610,COG5045	N/A	N/A	N/A	N/A
KOfam	UHGV-0023752_3	K01160	50.2	0.000000000000072	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0023752_3	phrog_1682	86.4	4e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023752_3	UniRef90_A0A1C5MBR6	185.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0023752_3	1235790.C805_00029	135.0	1.22e-39	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0023752_3	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0023752_3	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0023752_3	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_4	phrog_72	47.0	0.0000000000001	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0023752_4	411490.ANACAC_00804	141.0	7.26e-40	N/A	N/A
structural_annotation	UHGV-0023752_4	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_5	phrog_659	61.0	1.7e-17	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023752_5	UniRef90_A0A417QG93	365.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023752_5	33035.JPJF01000135_gene5082	265.0	0	N/A	N/A
Pfam	UHGV-0023752_5	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0023752_5	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_6	phrog_30234	54.0	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0023752_6	33035.JPJF01000071_gene4461	84.3	3.37e-21	N/A	N/A
KOfam	UHGV-0023752_14	K18830	64.0	2.9e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0023752_14	phrog_8	55.2	8.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023752_14	UniRef90_D4M569	107.0	1.5e-27	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0023752_14	411470.RUMGNA_02181	99.8	2.84e-25	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-0023752_14	retron_type_VI_hth_cluster2_1	47.5	0.00000000000021	N/A	Retron
Pfam	UHGV-0023752_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023752_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023752_14	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023752_16	UniRef90_A0A416RX34	279.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0023752_16	742765.HMPREF9457_02739	252.0	0	N/A	N/A
Pfam	UHGV-0023752_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0023752_16	PF12844,PF16452,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023752_17	UniRef90_A0A366U359	71.6	0.00000000000141	LysM domain	N/A
eggNOG-mapper	UHGV-0023752_17	411470.RUMGNA_03228	103.0	8.36e-26	N/A	N/A
KOfam	UHGV-0023752_18	K14059	211.3	0	int; integrase	N/A
PHROG	UHGV-0023752_18	phrog_1	197.5	0	integrase	integration and excision
UniRef90	UHGV-0023752_18	UniRef90_UPI00040E88F0	312.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0023752_18	1280698.AUJS01000007_gene999	312.0	0	Phage integrase family	N/A
Pfam	UHGV-0023752_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0023752_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0023752_18	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_19	phrog_2329	48.8	0.000000000000089	N/A	unknown function
UniRef90	UHGV-0023752_19	UniRef90_A0A396KXP8	83.2	8.65e-20	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
structural_annotation	UHGV-0023752_19	PF04014,COG2336	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_21	phrog_374	74.5	7.00649e-45	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023752_21	UniRef90_UPI001C3AB864	139.0	1.58e-36	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0023752_21	887929.HMP0721_2097	129.0	2.51e-33	AP2 domain protein	N/A
AcrCatalog	UHGV-0023752_21	cluster_5564	92.4	1.47e-25	NA	N/A
structural_annotation	UHGV-0023752_21	PF18337,PF00847	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_27	phrog_1129	74.3	1.1e-21	holin	lysis
UniRef90	UHGV-0023752_27	UniRef90_UPI001F15FE24	150.0	1.4013e-45	phage holin family protein	N/A
eggNOG-mapper	UHGV-0023752_27	411461.DORFOR_00721	173.0	0	N/A	N/A
Pfam	UHGV-0023752_27	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0023752_27	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_28	phrog_4105	81.3	9.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0023752_28	411459.RUMOBE_00911	170.0	0	N/A	N/A
PHROG	UHGV-0023752_29	phrog_9478	265.0	0	minor tail protein	tail
UniRef90	UHGV-0023752_29	UniRef90_UPI0018A94FF7	488.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0023752_29	476272.RUMHYD_02865	369.0	0	N/A	N/A
Pfam	UHGV-0023752_29	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0023752_29	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0023752_29	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_30	phrog_202	292.3	0	distal tail protein Dit	tail
UniRef90	UHGV-0023752_30	UniRef90_UPI00156D6BD7	597.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0023752_30	476272.RUMHYD_02864	274.0	0	N/A	N/A
Pfam	UHGV-0023752_30	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0023752_30	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0023752_30	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0023752_30	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_31	phrog_1686	262.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0023752_31	UniRef90_A0A173ZEC2	140.0	3.65e-30	Tape measure domain	N/A
eggNOG-mapper	UHGV-0023752_31	1235798.C817_03468	228.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0023752_31	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0023752_31	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0023752_31	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0023752_31	PF20155,PF06456,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_32	phrog_441	53.4	0.0000000000000045	tail assembly chaperone	tail
eggNOG-mapper	UHGV-0023752_32	476272.RUMHYD_02862	60.1	0.000000000104	N/A	N/A
PHROG	UHGV-0023752_33	phrog_183	67.5	2.2e-19	tail chaperone protein	tail
UniRef90	UHGV-0023752_33	UniRef90_UPI001E5F9461	103.0	3.42e-26	tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0023752_33	476272.RUMHYD_02861	109.0	2.98e-29	Phage tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-0023752_33	PF12363	N/A	N/A	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
structural_annotation	UHGV-0023752_33	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_34	phrog_238	163.8	0	major tail protein	tail
UniRef90	UHGV-0023752_34	UniRef90_UPI001E5151E9	232.0	0	phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-0023752_34	476272.RUMHYD_02860	228.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0023752_34	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-0023752_34	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0023752_34	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_35	phrog_176	58.0	1.5e-16	tail terminator	connector
UniRef90	UHGV-0023752_35	UniRef90_UPI00051ADDDD	110.0	1.22e-28	N/A	N/A
eggNOG-mapper	UHGV-0023752_35	476272.RUMHYD_02859	106.0	6.73e-28	N/A	N/A
structural_annotation	UHGV-0023752_35	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_36	phrog_5	89.7	4.3e-26	tail completion or Neck1 protein	connector
UniRef90	UHGV-0023752_36	UniRef90_UPI001D03F1E5	133.0	3.7e-38	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0023752_36	476272.RUMHYD_02858	126.0	3.4e-36	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0023752_36	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0023752_36	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0023752_36	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_37	phrog_348	72.4	6.2e-21	minor head protein	head and packaging
eggNOG-mapper	UHGV-0023752_37	1235798.C817_03474	120.0	4.57e-34	N/A	N/A
structural_annotation	UHGV-0023752_37	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_38	phrog_132	94.1	9.8e-28	head-tail adaptor	connector
UniRef90	UHGV-0023752_38	UniRef90_A0A391NY33	144.0	1.49939e-42	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0023752_38	476272.RUMHYD_02856	119.0	9.51e-34	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0023752_38	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0023752_38	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_39	phrog_544	124.6	9.2e-37	major head protein	head and packaging
UniRef90	UHGV-0023752_39	UniRef90_A0A174MF51	581.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0023752_39	1232453.BAIF02000011_gene3359	575.0	0	N/A	N/A
Pfam	UHGV-0023752_39	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0023752_39	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_40	phrog_172	150.2	1.26117e-44	head scaffolding protein	head and packaging
UniRef90	UHGV-0023752_40	UniRef90_UPI001D0541EB	210.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023752_40	1232453.BAIF02000011_gene3358	131.0	3.01e-35	N/A	N/A
Pfam	UHGV-0023752_40	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0023752_40	PF14265	N/A	N/A	N/A	N/A
KOfam	UHGV-0023752_41	K07584	79.5	5e-23	N/A	N/A
PHROG	UHGV-0023752_41	phrog_4478	91.4	5.9e-27	peptidase	other
UniRef90	UHGV-0023752_41	UniRef90_UPI001E4C016E	155.0	0	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0023752_41	476272.RUMHYD_02852	145.0	1.82169e-44	Cysteine protease Prp	N/A
Pfam	UHGV-0023752_41	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0023752_41	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023752_41	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_42	phrog_14030	143.2	1.19951e-42	N/A	unknown function
UniRef90	UHGV-0023752_42	UniRef90_A0A373A8I5	315.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0023752_42	742741.HMPREF9475_00446	219.0	0	N/A	N/A
structural_annotation	UHGV-0023752_42	PF18342,NF041850,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_43	phrog_115	317.2	0	minor head protein	head and packaging
UniRef90	UHGV-0023752_43	UniRef90_UPI001A9A45CF	377.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0023752_43	1232453.BAIF02000011_gene3354	362.0	0	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0023752_43	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0023752_43	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0023752_43	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023752_43	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_44	phrog_64	381.4	0	portal protein	head and packaging
UniRef90	UHGV-0023752_44	UniRef90_A0A373P643	678.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0023752_44	1232453.BAIF02000011_gene3353	645.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0023752_44	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0023752_44	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0023752_44	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_45	phrog_38	149.5	1.96182e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0023752_45	UniRef90_UPI00046F67CE	635.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0023752_45	1232453.BAIF02000011_gene3352	634.0	0	N/A	N/A
structural_annotation	UHGV-0023752_45	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_46	phrog_309	187.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-0023752_46	UniRef90_UPI000E5D110A	199.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0023752_46	1232453.BAIF02000011_gene3351	188.0	0	HNH endonuclease	N/A
COG	UHGV-0023752_46	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0023752_46	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_47	phrog_56	50.5	0.000000000000028	DNA methyltransferase	other
UniRef90	UHGV-0023752_47	UniRef90_UPI00164C574E	167.0	4.2039e-45	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0023752_47	1416012.V5URG0_9CAUD	56.2	0.00000226	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0023752_47	MTase_II_00075	62.0	5e-19	Type II methyltransferase	RM
structural_annotation	UHGV-0023752_47	PF02086,MF_01012,TIGR00571,COG0338	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023752_48	1688.BCUN_0619	68.9	0.000000000000276	D12 class N6 adenine-specific DNA methyltransferase	N/A
Pfam	UHGV-0023752_48	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
PHROG	UHGV-0023752_51	phrog_5051	129.5	2.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0023752_52	642227.HA49_08410	52.8	0.0000073	N/A	N/A
eggNOG-mapper	UHGV-0023752_53	397290.C810_01505	130.0	3.24e-38	N/A	N/A
PHROG	UHGV-0023752_54	phrog_15198	60.3	3.4e-17	N/A	unknown function
UniRef90	UHGV-0023752_54	UniRef90_UPI0015708581	119.0	9.51e-32	N/A	N/A
eggNOG-mapper	UHGV-0023752_54	658655.HMPREF0988_00863	84.7	1.24e-18	N/A	N/A
Pfam	UHGV-0023752_54	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0023752_55	phrog_36	71.4	1.5e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0023752_55	UniRef90_A0A3R5X3C8	168.0	0	N/A	N/A
eggNOG-mapper	UHGV-0023752_55	97139.C824_05976	159.0	0	sigma factor activity	N/A
Pfam	UHGV-0023752_55	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0023752_55	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0023752_55	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0023752_57	phrog_4433	161.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0023752_57	665950.HMPREF1025_01373	65.5	0.000000000388	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0023752_57	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0023752_57	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0023752	Yes	34,351	44	91	1