vOTU vOTU-073357

vOTU: vOTU-073357

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-073357
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-00170 → vGENUS-00088 → vSUBGEN-20785 → vOTU-073357
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0179221
Biosample ID	SAMN09781754
Genome length (bp)	41,274 bps
CheckV completeness	91.89% (High-quality)
CDS count	69
CDS density	91.40%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	315	Host agreement	98.1
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	52	Host agreement	78.85

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0179221_1	phrog_119	59.1	7.8e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179221_1	UniRef90_A0A395WA48	262.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0179221_1	1211814.CAPG01000074_gene3460	65.5	0.0000000000038	HNH endonuclease	N/A
Pfam	UHGV-0179221_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0179221_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0179221_2	phrog_361	74.5	1.3e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0179221_2	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0179221_2	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-0179221_2	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0179221_2	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0179221_2	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_3	phrog_9	310.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0179221_3	UniRef90_A0A395WD03	1122.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0179221_3	742740.HMPREF9474_04307	548.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0179221_3	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0179221_3	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0179221_3	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0179221_3	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_4	phrog_12	104.3	9.9e-31	portal protein	head and packaging
UniRef90	UHGV-0179221_4	UniRef90_A0A395W9X2	805.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0179221_4	1203606.HMPREF1526_01337	284.0	0	Portal protein	N/A
Pfam	UHGV-0179221_4	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0179221_4	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0179221_4	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0179221_5	K06904	88.2	1.2e-25	N/A	N/A
PHROG	UHGV-0179221_5	phrog_80	117.5	1.9e-34	head maturation protease	head and packaging
UniRef90	UHGV-0179221_5	UniRef90_A0A413UET6	352.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0179221_5	411470.RUMGNA_02064	174.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0179221_5	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0179221_5	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0179221_5	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0179221_5	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_6	phrog_10	84.9	1e-24	major head protein	head and packaging
UniRef90	UHGV-0179221_6	UniRef90_A0A395WF70	783.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0179221_6	1536774.H70357_10630	168.0	3.22299e-44	Phage capsid family	N/A
Pfam	UHGV-0179221_6	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0179221_6	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0179221_6	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0179221_6	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_7	phrog_5223	51.2	0.000000000000018	neck protein	connector
UniRef90	UHGV-0179221_7	UniRef90_A0A374RXD1	82.0	2.19e-18	DNA-packaging protein	N/A
structural_annotation	UHGV-0179221_7	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_8	phrog_1951	72.8	3.5e-21	head-tail adaptor	connector
UniRef90	UHGV-0179221_8	UniRef90_A0A395WC07	223.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0179221_8	588581.Cpap_1270	60.1	0.000000000373	N/A	N/A
structural_annotation	UHGV-0179221_8	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179221_9	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179221_10	UniRef90_A0A374RUJ8	137.0	4.75e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0179221_10	86416.Clopa_0344	57.0	0.0000000176	N/A	N/A
structural_annotation	UHGV-0179221_10	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_11	phrog_88	146.6	1.30321e-43	major tail protein	tail
UniRef90	UHGV-0179221_11	UniRef90_A0A395WA58	394.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0179221_11	1033744.CAEL01000029_gene1276	152.0	5.1848e-44	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0179221_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0179221_11	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179221_12	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0179221_14	K20282	60.7	1.8e-18	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0179221_14	phrog_13339	346.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0179221_14	UniRef90_A0A395WD11	975.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0179221_14	1123299.AUKZ01000018_gene181	242.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0179221_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0179221_14	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0179221_14	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0179221_14	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_15	phrog_33	53.5	0.0000000000000063	distal tail protein Dit	tail
UniRef90	UHGV-0179221_15	UniRef90_A0A1C6JHE5	65.5	0.00000000456	Phage-related protein	N/A
Pfam	UHGV-0179221_15	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0179221_15	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0179221_15	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0179221_15	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_16	phrog_1067	49.5	2.5e-23	minor head protein	head and packaging
eggNOG-mapper	UHGV-0179221_16	1232446.BAIE02000002_gene836	57.8	0.00000684	Phage minor structural protein	N/A
Pfam	UHGV-0179221_16	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
NCBIFam	UHGV-0179221_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0179221_16	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0179221_16	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179221_17	PF10651,COG5513	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179221_18	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179221_19	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
KOfam	UHGV-0179221_20	K01051	60.7	1.5e-17	E3.1.1.11; pectinesterase [EC:3.1.1.11]	N/A
UniRef90	UHGV-0179221_20	UniRef90_UPI001D0919FE	581.0	0	pectinesterase family protein	N/A
Pfam	UHGV-0179221_20	PF01095	N/A	N/A	Pectinesterase	Pectinesterase
COG	UHGV-0179221_20	COG4677	N/A	N/A	Pectin methylesterase and related acyl-CoA thioesterases	N/A
structural_annotation	UHGV-0179221_20	PF01095,PF10651,PF17994,NF041896,COG4677,COG3470	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179221_25	UniRef90_A0A8F0WFQ8	68.6	0.000000000266	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-0179221_25	476272.RUMHYD_01770	112.0	3.53e-28	N/A	N/A
PHROG	UHGV-0179221_26	phrog_20016	62.7	4.6e-18	N/A	unknown function
UniRef90	UHGV-0179221_26	UniRef90_A0A395WF88	259.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0179221_26	1226322.HMPREF1545_00077	57.8	0.0000000123	N/A	N/A
Pfam	UHGV-0179221_26	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-0179221_26	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_28	phrog_443	55.3	0.000000000000002	holin	lysis
UniRef90	UHGV-0179221_28	UniRef90_A0A2U2ELA1	77.8	1.85e-17	Membrane protein	N/A
eggNOG-mapper	UHGV-0179221_28	476272.RUMHYD_01759	85.5	3.81e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0179221_28	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0179221_28	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0179221_30	K01447	60.4	3.8e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0179221_30	phrog_7698	153.5	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0179221_30	UniRef90_UPI001D0AA402	546.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0179221_30	1125712.HMPREF1316_2631	145.0	2.77e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0179221_30	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0179221_30	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0179221_30	COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0179221_31	K14059	198.4	0	int; integrase	N/A
PHROG	UHGV-0179221_31	phrog_1	177.2	0	integrase	integration and excision
UniRef90	UHGV-0179221_31	UniRef90_A0A395WBW7	739.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0179221_31	1235796.C815_00955	299.0	0	DNA integration	N/A
Pfam	UHGV-0179221_31	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0179221_31	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0179221_31	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_32	phrog_5059	94.8	8.8e-28	N/A	unknown function
UniRef90	UHGV-0179221_32	UniRef90_A0A395WDV4	247.0	0	N/A	N/A
eggNOG-mapper	UHGV-0179221_32	883156.HMPREF9282_00200	71.2	0.000000000000483	N/A	N/A
Pfam	UHGV-0179221_32	PF08861	N/A	N/A	N/A	DUF1828
UniRef90	UHGV-0179221_33	UniRef90_A0A413CSC4	239.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0179221_33	796940.HMPREF9628_02206	64.3	0.0000000000134	N/A	N/A
Pfam	UHGV-0179221_33	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
structural_annotation	UHGV-0179221_33	PF18812,COG2929	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_35	phrog_4980	120.5	1.5e-35	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0179221_35	1507.HMPREF0262_00674	68.2	0.000000000767	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0179221_35	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
structural_annotation	UHGV-0179221_35	MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-0179221_36	K18830	65.1	1.6e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0179221_36	phrog_8	49.2	0.000000000000095	transcriptional regulator	transcription regulation
UniRef90	UHGV-0179221_36	UniRef90_A0A413CSI3	267.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0179221_36	999413.HMPREF1094_02045	103.0	1.16e-26	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0179221_36	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0179221_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0179221_36	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179221_39	UniRef90_UPI001D14AAA4	71.6	0.0000000000000246	N/A	N/A
KOfam	UHGV-0179221_41	K04763	140.6	1.79997e-41	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0179221_41	phrog_1	121.7	8.1e-36	integrase	integration and excision
UniRef90	UHGV-0179221_41	UniRef90_A0A395W9T7	564.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0179221_41	999413.HMPREF1094_02021	228.0	0	Phage integrase family	N/A
Pfam	UHGV-0179221_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0179221_41	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0179221_41	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_45	phrog_428	152.8	2.8026e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179221_45	UniRef90_A0A395WBX6	485.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0179221_45	1121090.KB894719_gene1107	140.0	5.69e-38	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0179221_45	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0179221_45	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0179221_45	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0179221_45	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-0179221_46	K02315	119.4	4.1e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0179221_46	phrog_50	106.2	4e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179221_46	UniRef90_A0A395WER8	538.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0179221_46	1232446.BAIE02000011_gene1611	133.0	4.47e-35	N/A	N/A
Pfam	UHGV-0179221_46	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-0179221_46	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0179221_46	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179221_49	171693.BN988_01626	53.1	0.00000187	N/A	N/A
PHROG	UHGV-0179221_52	phrog_2118	122.7	3.3e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179221_52	UniRef90_A0A374RH39	195.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0179221_52	742740.HMPREF9474_03129	125.0	1.11e-35	HNH endonuclease	N/A
Pfam	UHGV-0179221_52	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0179221_52	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0179221_52	TIGR02646,COG1403	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179221_53	PF16789	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_55	phrog_15198	41.4	0.0000000000079	N/A	unknown function
UniRef90	UHGV-0179221_55	UniRef90_A0A395WBY6	160.0	0	N/A	N/A
structural_annotation	UHGV-0179221_58	PF11061	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179221_61	UniRef90_A0A413UEX6	285.0	0	N/A	N/A
Pfam	UHGV-0179221_61	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0179221_61	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0179221_63	PF10879	N/A	N/A	N/A	N/A
PHROG	UHGV-0179221_64	phrog_2316	43.2	0.0000000000075	N/A	unknown function
UniRef90	UHGV-0179221_64	UniRef90_A0A3E4YBW5	121.0	4.96e-34	N/A	N/A
eggNOG-mapper	UHGV-0179221_64	1280676.AUJO01000024_gene3262	65.1	0.00000000000151	N/A	N/A
structural_annotation	UHGV-0179221_64	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0179221	Yes	41,274	33	92	1