vOTU vOTU-073664

vOTU: vOTU-073664

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-073664
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-01250 → vGENUS-12114 → vOTU-073664
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900539695
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0022072
Biosample ID	SAMEA4766019
Genome length (bp)	39,062 bps
CheckV completeness	89.54% (Medium-quality)
CDS count	56
CDS density	92.19%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900539695	Total connections	10	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0022072_1	phrog_23052	64.1	1.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0022072_1	1121296.JONJ01000026_gene2165	69.3	0.00000000000339	N/A	N/A
PHROG	UHGV-0022072_2	phrog_1194	96.1	2.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-0022072_2	445972.ANACOL_01864	50.4	0.00000264	N/A	N/A
Pfam	UHGV-0022072_2	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0022072_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0022072_3	K03529	46.0	0.00000000000023	smc; chromosome segregation protein	N/A
PHROG	UHGV-0022072_3	phrog_1535	272.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0022072_3	1235800.C819_00476	184.0	1.4013e-44	tape measure	N/A
COG	UHGV-0022072_3	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0022072_4	phrog_706	90.2	2.3e-26	N/A	unknown function
UniRef90	UHGV-0022072_4	UniRef90_UPI0013141117	213.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0022072_4	665956.HMPREF1032_03058	224.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0022072_4	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0022072_4	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_5	phrog_11299	88.2	5.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0022072_5	665956.HMPREF1032_03059	135.0	7.16e-39	N/A	N/A
structural_annotation	UHGV-0022072_5	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_6	phrog_3099	158.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0022072_6	411471.SUBVAR_06936	265.0	0	N/A	N/A
structural_annotation	UHGV-0022072_6	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_7	phrog_3266	80.2	2.1e-23	tail completion	connector
eggNOG-mapper	UHGV-0022072_7	663278.Ethha_0492	58.5	0.00000000578	N/A	N/A
structural_annotation	UHGV-0022072_7	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_8	phrog_556	87.0	1.7e-25	minor head protein	head and packaging
UniRef90	UHGV-0022072_8	UniRef90_UPI001958E7C1	106.0	4.61e-27	minor capsid protein	N/A
eggNOG-mapper	UHGV-0022072_8	525255.HMPREF0077_0381	84.7	1.23e-19	Minor capsid protein	N/A
Pfam	UHGV-0022072_8	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0022072_8	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_9	phrog_3366	41.1	0.000000000000041	N/A	unknown function
Pfam	UHGV-0022072_9	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0022072_9	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_10	phrog_541	42.2	0.000000000013	head-tail adaptor	connector
PHROG	UHGV-0022072_11	phrog_247	189.9	0	major head protein	head and packaging
UniRef90	UHGV-0022072_11	UniRef90_A0A8J4H4L4	136.0	8.57e-34	Coat protein	N/A
eggNOG-mapper	UHGV-0022072_11	768710.DesyoDRAFT_1109	125.0	8.82e-31	N/A	N/A
structural_annotation	UHGV-0022072_11	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_12	phrog_194	46.3	0.00000000000075	head scaffolding protein	head and packaging
structural_annotation	UHGV-0022072_12	PF06810,MF_02110	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022072_13	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_14	phrog_2443	220.5	0	amidoligase enzyme	other
UniRef90	UHGV-0022072_14	UniRef90_A0A174F0K6	291.0	0	Alpha-L-fucosidase	N/A
eggNOG-mapper	UHGV-0022072_14	665950.HMPREF1025_02711	291.0	0	Putative amidoligase enzyme	N/A
AcrCatalog	UHGV-0022072_14	cluster_58247	80.5	4.71e-19	NA	N/A
Pfam	UHGV-0022072_14	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
structural_annotation	UHGV-0022072_14	PF12224	N/A	N/A	N/A	N/A
KOfam	UHGV-0022072_17	K00682	64.0	2.1e-18	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	N/A
PHROG	UHGV-0022072_17	phrog_2520	108.2	5.8e-32	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0022072_17	UniRef90_A0A367GJL1	273.0	0	Gamma-glutamylcyclotransferase	N/A
eggNOG-mapper	UHGV-0022072_17	1235800.C819_03970	149.0	5.11474e-43	Gamma-glutamyl cyclotransferase, AIG2-like	N/A
Pfam	UHGV-0022072_17	PF06094	N/A	N/A	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
COG	UHGV-0022072_17	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
structural_annotation	UHGV-0022072_17	PF06094,COG2105	N/A	N/A	N/A	N/A
KOfam	UHGV-0022072_18	K05521	273.3	0	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	N/A
PHROG	UHGV-0022072_18	phrog_6572	87.4	9.80909e-45	ADP-ribosylglycohydrolase	other
UniRef90	UHGV-0022072_18	UniRef90_A0A367GJZ8	461.0	0	ADP-ribosyl-[dinitrogen reductase] hydrolase	N/A
eggNOG-mapper	UHGV-0022072_18	1007103.AFHW01000094_gene3200	185.0	0	ADP-ribosylglycohydrolase	N/A
Pfam	UHGV-0022072_18	PF03747	N/A	N/A	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
COG	UHGV-0022072_18	COG1397	N/A	N/A	ADP-ribosylglycohydrolase	N/A
structural_annotation	UHGV-0022072_18	PF03747,NF041672,COG1397	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_19	phrog_27009	45.7	0.00000000000056	N/A	unknown function
PHROG	UHGV-0022072_20	phrog_581	273.8	0	minor head protein	head and packaging
UniRef90	UHGV-0022072_20	UniRef90_UPI001C0164DE	325.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0022072_20	903814.ELI_3213	251.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0022072_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0022072_20	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022072_20	PF06152,PF12636	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_22	phrog_533	274.1	0	portal protein	head and packaging
UniRef90	UHGV-0022072_22	UniRef90_A0A3E2XD02	612.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0022072_22	642492.Clole_0815	255.0	0	N/A	N/A
Pfam	UHGV-0022072_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0022072_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0022072_23	K06909	302.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0022072_23	phrog_3717	122.2	3.4e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0022072_23	UniRef90_A0A367GIK4	862.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0022072_23	665956.HMPREF1032_02957	404.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0022072_23	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0022072_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0022072_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0022072_23	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_24	phrog_309	51.0	0.000000000000012	terminase small subunit	head and packaging
UniRef90	UHGV-0022072_24	UniRef90_A0A1C7FRC2	77.8	0.00000000000000183	Transposase	N/A
eggNOG-mapper	UHGV-0022072_24	1200557.JHWV01000001_gene278	64.3	0.0000000000517	transposase activity	N/A
COG	UHGV-0022072_24	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-0022072_25	K00571	121.6	9.4e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0022072_25	phrog_498	445.7	0	DNA methyltransferase	other
UniRef90	UHGV-0022072_25	UniRef90_A0A367GIB5	819.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0022072_25	1423758.BN55_01455	422.0	0	DNA methylase	N/A
PADLOC	UHGV-0022072_25	MTase_II_00015	273.2	0	Type II methyltransferase	RM
Pfam	UHGV-0022072_25	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0022072_25	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0022072_25	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0022072_25	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022072_30	645991.Sgly_0338	59.3	0.000000217	N/A	N/A
COG	UHGV-0022072_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022072_30	PF03496,MF_04142,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_31	phrog_8680	166.3	0	N/A	unknown function
UniRef90	UHGV-0022072_31	UniRef90_A0A3R6K733	142.0	8.38e-39	N/A	N/A
eggNOG-mapper	UHGV-0022072_31	1229517.AMFD01000023_gene1324	130.0	1.22e-34	N/A	N/A
Pfam	UHGV-0022072_31	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0022072_31	PF14386,NF041059	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022072_32	PF07374,TIGR01637	N/A	N/A	N/A	N/A
KOfam	UHGV-0022072_34	K14440	128.9	2.1e-38	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0022072_34	phrog_62	379.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022072_34	UniRef90_A0A367GJS6	811.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0022072_34	1385512.N784_13490	471.0	0	SNF2 family	N/A
PADLOC	UHGV-0022072_34	ZorD1_00007	94.8	1.1e-27	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0022072_34	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0022072_34	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0022072_34	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0022072_34	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_35	phrog_93	54.1	0.0000000000000023	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022072_35	UniRef90_UPI0018F1F23F	160.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0022072_35	1235798.C817_04115	98.6	2.3e-25	VRR-NUC domain protein	N/A
structural_annotation	UHGV-0022072_35	PF01870,MF_00130,NF002584,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_36	phrog_256	954.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022072_36	UniRef90_A0A367GI49	1130.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0022072_36	1395587.P364_0122125	745.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-0022072_36	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0022072_36	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0022072_36	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022072_38	PF13451	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_39	phrog_2245	54.8	0.0000000000000018	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-0022072_39	PF02888,COG1694	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022072_42	760568.Desku_0919	84.0	2.78e-17	N/A	N/A
structural_annotation	UHGV-0022072_42	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0022072_43	K02334	767.4	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0022072_43	phrog_17	358.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022072_43	UniRef90_A0A367GJN4	1132.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0022072_43	693746.OBV_01840	655.0	0	DNA polymerase	N/A
Pfam	UHGV-0022072_43	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0022072_43	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0022072_43	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_44	phrog_112	139.3	4.69435e-43	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022072_44	UniRef90_A0A3E2XCH4	210.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022072_44	411460.RUMTOR_00449	176.0	0	N/A	N/A
Pfam	UHGV-0022072_44	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0022072_44	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0022072_46	K07465	49.1	0.000000000000078	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-0022072_46	phrog_69	324.2	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022072_46	UniRef90_A0A367GI90	657.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022072_46	1408437.JNJN01000081_gene1518	335.0	0	N/A	N/A
Pfam	UHGV-0022072_46	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0022072_46	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0022072_46	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022072_48	PF01157,MF_01354,NF002745,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0022072_49	phrog_18562	51.0	0.000000000000037	N/A	unknown function
KOfam	UHGV-0022072_50	K07171	59.4	9.6e-17	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0022072_50	phrog_1936	68.9	8.6e-20	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0022072_50	UniRef90_A0A3E2XCI4	60.5	0.00000000241	Type II toxin-antitoxin system PemK/MazF family toxin	N/A
Pfam	UHGV-0022072_50	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0022072_50	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0022072_50	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022072_54	UniRef90_A0A2J4JRR6	81.6	5.21e-19	Toxin-antitoxin system, antitoxin component, Xre family protein	N/A
eggNOG-mapper	UHGV-0022072_54	887929.HMP0721_1290	59.7	0.0000000000508	Helix-turn-helix domain of resolvase	N/A
Pfam	UHGV-0022072_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0022072_54	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0022072_55	K01356	171.9	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0022072_55	phrog_4	125.0	7.4e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-0022072_55	UniRef90_A0A1Y4T0G5	279.0	0	Repressor LexA	N/A
eggNOG-mapper	UHGV-0022072_55	411483.FAEPRAA2165_03041	261.0	0	N/A	N/A
Pfam	UHGV-0022072_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0022072_55	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0022072_55	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0022072_55	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0022072_56	K14059	138.3	9.99995e-41	int; integrase	N/A
PHROG	UHGV-0022072_56	phrog_1	148.8	4.34403e-44	integrase	integration and excision
UniRef90	UHGV-0022072_56	UniRef90_A0A564SC42	345.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0022072_56	748224.HMPREF9436_03382	246.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0022072_56	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0022072_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0022072_56	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0022072_56	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0022072	Yes	39,062	59	90	1
UHGV-0025397	No	40,685	59	92	1
UHGV-0032657	No	39,175	59	89	1
UHGV-0012242	No	38,497	59	87	1
UHGV-0009287	No	37,497	59	85	1