vOTU vOTU-074046

vOTU: vOTU-074046

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-074046
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-00912 → vSUBGEN-23019 → vOTU-074046
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0124281
Biosample ID	SAMN00791925
Genome length (bp)	36,707 bps
CheckV completeness	92.01% (High-quality)
CDS count	54
CDS density	93.10%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	74	Host agreement	81.08
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	167	Host agreement	95.81

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.01)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0124281_2	K07273	194.0	0	acm; lysozyme	N/A
PHROG	UHGV-0124281_2	phrog_291	171.2	0	endolysin	lysis
UniRef90	UHGV-0124281_2	UniRef90_R7NMS6	348.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0124281_2	877420.ATVW01000004_gene383	147.0	4.21e-38	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0124281_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0124281_2	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0124281_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0124281_2	PF01183,PF01476,TIGR02899,NF007360,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_3	phrog_199	90.8	1.4e-26	holin	lysis
UniRef90	UHGV-0124281_3	UniRef90_A0A348ZBJ4	278.0	0	Holin	N/A
eggNOG-mapper	UHGV-0124281_3	411459.RUMOBE_01714	207.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0124281_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0124281_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0124281_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0124281_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_6	phrog_18190	42.3	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0124281_6	742733.HMPREF9469_01807	65.1	0.0000000252	N/A	N/A
structural_annotation	UHGV-0124281_6	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_7	phrog_1194	42.5	0.0000000000095	N/A	unknown function
eggNOG-mapper	UHGV-0124281_7	1235790.C805_00088	83.6	1.67e-18	N/A	N/A
Pfam	UHGV-0124281_7	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0124281_7	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_8	phrog_1535	176.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0124281_8	UniRef90_A0A2N0UYY1	403.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0124281_8	1235790.C805_00087	295.0	0	tape measure	N/A
COG	UHGV-0124281_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0124281_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_9	phrog_5319	70.3	2e-20	outer membrane protein	other
UniRef90	UHGV-0124281_9	UniRef90_A0A1Q6JN93	140.0	3.38e-38	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0124281_9	1042156.CXIVA_15870	101.0	9.84e-23	sh3 domain protein	N/A
COG	UHGV-0124281_9	COG3103	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_10	phrog_706	139.7	1.90002e-41	N/A	unknown function
UniRef90	UHGV-0124281_10	UniRef90_UPI001B3C82AE	362.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0124281_10	1160721.RBI_II00530	201.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0124281_10	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0124281_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_11	phrog_11299	114.0	1.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0124281_11	1449050.JNLE01000003_gene3883	100.0	5.19e-25	N/A	N/A
structural_annotation	UHGV-0124281_11	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_12	phrog_3099	117.6	9.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-0124281_12	1160721.RBI_II00532	186.0	0	N/A	N/A
structural_annotation	UHGV-0124281_12	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_13	phrog_3266	98.5	5.5e-29	tail completion	connector
eggNOG-mapper	UHGV-0124281_13	1449050.JNLE01000003_gene3885	148.0	5.74532e-44	N/A	N/A
structural_annotation	UHGV-0124281_13	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_14	phrog_556	118.2	3.4e-35	minor head protein	head and packaging
UniRef90	UHGV-0124281_14	UniRef90_UPI001B3C5A2B	319.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0124281_14	1449050.JNLE01000003_gene3886	138.0	8e-40	N/A	N/A
Pfam	UHGV-0124281_14	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0124281_14	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_15	phrog_3366	43.8	0.0000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0124281_15	1449050.JNLE01000003_gene3887	64.7	0.00000000000567	N/A	N/A
PHROG	UHGV-0124281_16	phrog_541	92.7	3.2e-27	head-tail adaptor	connector
UniRef90	UHGV-0124281_16	UniRef90_A0A371AQT0	100.0	3.62e-25	N/A	N/A
eggNOG-mapper	UHGV-0124281_16	1449050.JNLE01000003_gene3888	103.0	3.52e-27	N/A	N/A
PHROG	UHGV-0124281_17	phrog_422	237.0	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0124281_17	693746.OBV_18090	343.0	0	N/A	N/A
structural_annotation	UHGV-0124281_17	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_18	phrog_194	105.5	6.4e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0124281_18	UniRef90_UPI001B3C6D0D	332.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0124281_18	411470.RUMGNA_02218	134.0	2.93e-37	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0124281_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0124281_18	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_20	phrog_581	319.9	0	minor head protein	head and packaging
UniRef90	UHGV-0124281_20	UniRef90_UPI001B3C97A7	1085.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0124281_20	1449050.JNLE01000003_gene3892	371.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0124281_20	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0124281_20	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124281_20	PF06152,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_21	phrog_533	298.6	0	portal protein	head and packaging
UniRef90	UHGV-0124281_21	UniRef90_UPI001B3C997D	868.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0124281_21	1304866.K413DRAFT_3035	454.0	0	N/A	N/A
structural_annotation	UHGV-0124281_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0124281_22	K06909	82.7	5.2e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0124281_22	phrog_2	82.8	7.5e-24	terminase large subunit	head and packaging
UniRef90	UHGV-0124281_22	UniRef90_UPI001B3C8BA8	853.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0124281_22	1304866.K413DRAFT_3034	597.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0124281_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0124281_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0124281_22	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_23	phrog_309	132.4	1.4e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0124281_23	UniRef90_UPI001B3C9B19	239.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0124281_23	374526.A5GYP7_9CAUD	132.0	8.43e-38	endonuclease activity	N/A
structural_annotation	UHGV-0124281_23	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_25	phrog_8680	249.4	0	N/A	unknown function
UniRef90	UHGV-0124281_25	UniRef90_A0A373KTP5	287.0	0	N/A	N/A
eggNOG-mapper	UHGV-0124281_25	411470.RUMGNA_02208	230.0	0	N/A	N/A
Pfam	UHGV-0124281_25	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0124281_25	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_26	phrog_36	54.1	0.0000000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-0124281_26	UniRef90_A0A2N0UXQ6	102.0	8.03e-26	N/A	N/A
eggNOG-mapper	UHGV-0124281_26	1321786.HMPREF1992_00991	62.4	0.0000000000708	sigma factor activity	N/A
COG	UHGV-0124281_26	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0124281_27	PF10571	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124281_28	PF09889	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124281_29	PF15591,MF_00667,NF000331	N/A	N/A	N/A	N/A
KOfam	UHGV-0124281_30	K01160	47.0	0.00000000000067	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0124281_30	phrog_140	100.5	1.8e-29	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124281_30	UniRef90_UPI001B3C90F3	292.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0124281_30	478749.BRYFOR_07588	194.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0124281_30	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0124281_30	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0124281_30	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0124281_31	K07505	400.1	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0124281_31	phrog_2597	1170.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124281_31	UniRef90_UPI001B3C4CA9	1028.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0124281_31	394503.Ccel_3304	949.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0124281_31	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0124281_31	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0124281_31	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0124281_31	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0124281_32	K17677	360.5	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0124281_32	phrog_16	290.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124281_32	UniRef90_UPI001B3C4DBD	1045.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0124281_32	1235798.C817_03499	830.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0124281_32	mREase_IV_00005	134.8	8e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0124281_32	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0124281_32	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0124281_32	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0124281_32	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_33	phrog_2698	196.1	0	N/A	unknown function
UniRef90	UHGV-0124281_33	UniRef90_UPI001B3C89FE	303.0	0	N/A	N/A
eggNOG-mapper	UHGV-0124281_33	608534.GCWU000341_02311	147.0	2.69049e-43	N/A	N/A
structural_annotation	UHGV-0124281_33	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_34	phrog_124	224.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124281_34	UniRef90_UPI001B3C5FE5	699.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0124281_34	394503.Ccel_3309	370.0	0	AAA domain	N/A
Pfam	UHGV-0124281_34	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0124281_34	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0124281_36	K03546	63.4	2.6e-18	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0124281_36	phrog_1499	480.7	0	N/A	unknown function
UniRef90	UHGV-0124281_36	UniRef90_UPI001B3C9718	740.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0124281_36	645991.Sgly_0320	490.0	0	domain protein	N/A
Pfam	UHGV-0124281_36	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0124281_36	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0124281_36	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
UniRef90	UHGV-0124281_41	UniRef90_UPI001B3C932B	164.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0124281_41	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0124281_41	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0124281_46	K07729	44.9	0.0000000000026	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0124281_46	phrog_2439	42.9	0.0000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0124281_46	UniRef90_A0A348ZC94	135.0	1.84999e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0124281_46	1235801.C822_00106	62.4	0.00000000000299	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0124281_46	retron_type_VI_hth_cluster2_1	44.4	0.0000000000052	N/A	Retron
Pfam	UHGV-0124281_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0124281_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0124281_46	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0124281_47	phrog_2967	72.9	5e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0124281_47	UniRef90_A0A348ZC95	201.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0124281_47	546273.VEIDISOL_00692	91.3	5.62e-22	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0124281_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0124281_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0124281_47	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0124281_48	UniRef90_UPI0007E1B082	67.0	0.00000000000038	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0124281_48	1232443.BAIA02000106_gene3117	70.1	0.0000000000000278	N/A	N/A
structural_annotation	UHGV-0124281_48	PF06114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124281_49	PF20505,MF_00194,NF001462,COG2974	N/A	N/A	N/A	N/A
KOfam	UHGV-0124281_51	K07729	50.6	0.000000000000046	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0124281_51	phrog_8	56.5	6.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0124281_51	UniRef90_UPI00164BD4EE	82.8	2.75e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0124281_51	931626.Awo_c14370	63.2	0.0000000000239	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0124281_51	retron_type_VI_hth_cluster2_1	42.4	0.00000000002	N/A	Retron
Pfam	UHGV-0124281_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0124281_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0124281_52	UniRef90_A0A348ZC97	370.0	0	UDP-N-acetylglucosamine kinase	N/A
eggNOG-mapper	UHGV-0124281_52	1408437.JNJN01000002_gene1419	195.0	0	zeta toxin	N/A
Pfam	UHGV-0124281_52	PF06414	N/A	N/A	Zeta toxin	Zeta_toxin
COG	UHGV-0124281_52	COG4185	N/A	N/A	Predicted ABC-type ATPase or kinase	N/A
structural_annotation	UHGV-0124281_52	PF06414,MF_00234,NF041574,COG4185	N/A	N/A	N/A	N/A
KOfam	UHGV-0124281_53	K14059	177.5	0	int; integrase	N/A
PHROG	UHGV-0124281_53	phrog_1	170.1	0	integrase	integration and excision
UniRef90	UHGV-0124281_53	UniRef90_UPI001B3C717A	701.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0124281_53	861454.HMPREF9099_00328	224.0	0	Phage integrase family	N/A
Pfam	UHGV-0124281_53	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0124281_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0124281_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0124281_53	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0124281	Yes	36,707	34	92	1
UHGV-1530280	No	36,658	34	92	1
UHGV-1801678	No	14,780	35	39	1