vOTU vOTU-074099

vOTU: vOTU-074099

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-074099
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00200 → vGENUS-01046 → vSUBGEN-06737 → vOTU-074099
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1863944
Biosample ID	N/A
Genome length (bp)	33,793 bps
CheckV completeness	99.13% (High-quality)
CDS count	47
CDS density	92.20%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	107	Host agreement	92.52
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	8	Host agreement	87.5

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1863944_1	phrog_119	75.0	1e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1863944_1	UniRef90_G9YSB5	153.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1863944_1	1235798.C817_02583	74.7	7.72e-16	HNH nucleases	N/A
Pfam	UHGV-1863944_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1863944_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1863944_2	phrog_3584	76.2	4.7e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1863944_2	742738.HMPREF9460_04063	235.0	0	N/A	N/A
structural_annotation	UHGV-1863944_2	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_6	phrog_38832	60.7	4.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-1863944_6	665956.HMPREF1032_03087	53.9	0.00000133	N/A	N/A
KOfam	UHGV-1863944_8	K03497	75.2	1.5e-21	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1863944_8	phrog_27290	335.3	0	N/A	unknown function
UniRef90	UHGV-1863944_8	UniRef90_UPI0003130F10	294.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1863944_8	1007096.BAGW01000033_gene1613	294.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1863944_8	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1863944_8	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1863944_8	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1863944_9	K03496	169.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1863944_9	phrog_164	134.1	1.2e-39	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1863944_9	UniRef90_UPI000318E277	284.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1863944_9	1007096.BAGW01000033_gene1614	274.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-1863944_9	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1863944_9	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1863944_9	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1863944_10	K02314	251.8	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1863944_10	phrog_19	218.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1863944_10	UniRef90_UPI00195856D7	393.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1863944_10	1226322.HMPREF1545_00095	264.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-1863944_10	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1863944_10	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1863944_10	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1863944_10	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_11	phrog_270	121.7	8.9e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1863944_11	UniRef90_UPI001F3D92C2	187.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1863944_11	742738.HMPREF9460_00851	167.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-1863944_11	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1863944_11	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1863944_11	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_13	phrog_6499	112.5	2.2e-33	transcriptional regulator	transcription regulation
UniRef90	UHGV-1863944_13	UniRef90_G9YL68	136.0	3.34e-38	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1863944_13	742738.HMPREF9460_00847	136.0	3.93e-39	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1863944_13	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1863944_13	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1863944_13	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1863944_14	K22300	52.7	0.0000000000000096	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1863944_14	phrog_8	42.6	0.0000000000095	transcriptional regulator	transcription regulation
UniRef90	UHGV-1863944_14	UniRef90_UPI000F0D19B9	59.7	0.000000000212	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1863944_14	1280680.AUJU01000017_gene3835	53.5	0.000000147	Helix-turn-helix domain	N/A
Pfam	UHGV-1863944_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1863944_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1863944_14	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1863944_16	K02342	154.1	1.4013e-45	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1863944_16	phrog_192	130.3	1.2e-38	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1863944_16	UniRef90_A0A8G0TY44	124.0	6.82e-30	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-1863944_16	1120947.ATUX01000009_gene152	108.0	1.05e-24	EXOIII	N/A
PADLOC	UHGV-1863944_16	cd06127	114.3	1.7e-33	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1863944_16	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-1863944_16	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-1863944_16	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-1863944_16	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
UniRef90	UHGV-1863944_17	UniRef90_A0A1Y3ZTC9	108.0	2.19e-28	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1863944_17	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1863944_17	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-1863944_17	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1863944_19	K23779	43.9	0.0000000000048	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
Pfam	UHGV-1863944_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1863944_19	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1863944_19	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1863944_20	1262449.CP6013_2082	157.0	0	N/A	N/A
structural_annotation	UHGV-1863944_20	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-1863944_21	K14059	142.2	6.39973e-42	int; integrase	N/A
PHROG	UHGV-1863944_21	phrog_1	139.6	2.79993e-41	integrase	integration and excision
UniRef90	UHGV-1863944_21	UniRef90_UPI0013EF4EFD	256.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1863944_21	1226322.HMPREF1545_00144	242.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1863944_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1863944_21	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1863944_21	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1863944_22	K07726	40.3	0.000000000059	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-1863944_22	phrog_25567	61.5	1.1e-17	N/A	unknown function
UniRef90	UHGV-1863944_22	UniRef90_UPI00164AED9E	134.0	2.7e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1863944_22	1235798.C817_04600	95.5	9.35e-24	N/A	N/A
Pfam	UHGV-1863944_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1863944_22	NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_26	phrog_435	47.7	0.00000000000031	endolysin	lysis
UniRef90	UHGV-1863944_26	UniRef90_A0A8D9PDS4	401.0	0	Cell wall hydrolase/autolysin	N/A
eggNOG-mapper	UHGV-1863944_26	1226322.HMPREF1545_01953	82.0	0.00000000000000274	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-1863944_26	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1863944_26	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_27	phrog_1129	76.2	2.9e-22	holin	lysis
UniRef90	UHGV-1863944_27	UniRef90_A0A8D9PDD4	181.0	0	Holin	N/A
eggNOG-mapper	UHGV-1863944_27	1226322.HMPREF1545_00069	110.0	1.24e-30	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1863944_27	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1863944_27	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_28	phrog_4105	103.7	1.1e-30	N/A	unknown function
UniRef90	UHGV-1863944_28	UniRef90_A0A8D9UHA9	206.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-1863944_28	411460.RUMTOR_01326	140.0	3.32949e-42	N/A	N/A
PHROG	UHGV-1863944_29	phrog_134	48.6	0.00000000000012	N/A	unknown function
eggNOG-mapper	UHGV-1863944_29	1151292.QEW_0674	54.3	0.00000000119	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1863944_29	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-1863944_29	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_31	phrog_366	44.2	0.0000000000032	tail fiber protein	tail
Pfam	UHGV-1863944_31	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-1863944_32	phrog_1067	284.9	0	minor head protein	head and packaging
UniRef90	UHGV-1863944_32	UniRef90_A0A316NPB5	399.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1863944_32	1123263.AUKY01000068_gene489	310.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1863944_32	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1863944_32	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1863944_32	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1863944_32	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_33	phrog_33	69.0	1.3e-19	distal tail protein Dit	tail
UniRef90	UHGV-1863944_33	UniRef90_A0A1C6H6D2	153.0	1.0804e-42	Phage-related protein	N/A
eggNOG-mapper	UHGV-1863944_33	585198.HMPREF0574_0620	65.1	0.000000000722	phage tail	N/A
COG	UHGV-1863944_33	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1863944_33	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_34	phrog_6900	254.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1863944_34	1216932.CM240_0625	295.0	0	tape measure	N/A
COG	UHGV-1863944_34	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1863944_34	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_37	phrog_88	84.1	1.9e-24	major tail protein	tail
UniRef90	UHGV-1863944_37	UniRef90_G9YSC5	102.0	1.14e-23	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1863944_37	33035.JPJF01000039_gene278	53.1	0.00000599	N/A	N/A
NCBIFam	UHGV-1863944_37	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1863944_37	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_38	phrog_5	41.2	0.000000000037	tail completion or Neck1 protein	connector
UniRef90	UHGV-1863944_38	UniRef90_R6UNR2	134.0	4.99e-37	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1863944_38	908340.HMPREF9406_2573	134.0	8.36e-38	N/A	N/A
structural_annotation	UHGV-1863944_38	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1863944_39	908340.HMPREF9406_2574	81.6	1.58e-18	N/A	N/A
structural_annotation	UHGV-1863944_39	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_40	phrog_19734	120.0	1.4e-35	N/A	unknown function
UniRef90	UHGV-1863944_40	UniRef90_A0A6I7GNS7	132.0	4.38e-37	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1863944_40	349161.Dred_2602	87.4	1.46e-20	N/A	N/A
structural_annotation	UHGV-1863944_40	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_41	phrog_749	65.5	8.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1863944_41	349161.Dred_2603	84.7	3.83e-20	N/A	N/A
PHROG	UHGV-1863944_42	phrog_10	156.3	0	major head protein	head and packaging
UniRef90	UHGV-1863944_42	UniRef90_G9YSC0	708.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1863944_42	1235792.C808_00086	432.0	0	Phage capsid family	N/A
Pfam	UHGV-1863944_42	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-1863944_42	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-1863944_42	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1863944_42	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1863944_42	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1863944_43	K01358	131.4	1.1e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1863944_43	phrog_94	249.7	0	head maturation protease	head and packaging
UniRef90	UHGV-1863944_43	UniRef90_A0A1Y4BT12	350.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1863944_43	349161.Dred_2605	302.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1863944_43	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1863944_43	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1863944_43	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_44	phrog_12	119.8	3.3e-36	portal protein	head and packaging
UniRef90	UHGV-1863944_44	UniRef90_G9YSB8	516.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-1863944_44	349161.Dred_2606	306.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1863944_44	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1863944_44	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1863944_44	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1863944_44	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_45	phrog_9	246.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1863944_45	UniRef90_A0A6I7GGF0	932.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1863944_45	1235792.C808_00083	613.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1863944_45	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1863944_45	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1863944_45	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1863944_45	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1863944_46	phrog_5110	61.4	1.1e-17	terminase small subunit	head and packaging
UniRef90	UHGV-1863944_46	UniRef90_UPI00195E8788	114.0	3.77e-29	P27 family phage terminase small subunit	N/A
Pfam	UHGV-1863944_46	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1863944_46	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-1863944_47	K00571	116.7	3e-34	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1863944_47	phrog_498	435.6	0	DNA methyltransferase	other
UniRef90	UHGV-1863944_47	UniRef90_A0A101WI32	457.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1863944_47	226185.EF_2114	422.0	0	DNA methylase	N/A
PADLOC	UHGV-1863944_47	MTase_II_00015	361.0	0	Type II methyltransferase	RM
Pfam	UHGV-1863944_47	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1863944_47	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1863944_47	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1863944_47	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1863944	Yes	33,793	60	99	1
UHGV-1580968	No	16,986	60	50	1