vOTU vOTU-074571

vOTU: vOTU-074571

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-074571
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-00131 → vSUBGEN-15247 → vOTU-074571
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0172094
Biosample ID	SAMN09781738
Genome length (bp)	42,014 bps
CheckV completeness	99.90% (High-quality)
CDS count	63
CDS density	91.33%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	419	Host agreement	98.57
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0172094_1	phrog_13845	54.1	0.000000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0172094_1	1399942.U3PDR2_9CAUD	63.5	0.0000000000252	N/A	N/A
structural_annotation	UHGV-0172094_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_2	phrog_9	242.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0172094_2	UniRef90_A0A2A7ALT4	1054.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0172094_2	610130.Closa_0741	635.0	0	Phage Terminase	N/A
Pfam	UHGV-0172094_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0172094_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0172094_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_3	phrog_12	125.9	3.3e-37	portal protein	head and packaging
UniRef90	UHGV-0172094_3	UniRef90_A0A2A7B6S8	548.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0172094_3	349161.Dred_2606	255.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0172094_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0172094_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0172094_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0172094_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0172094_4	K01358	76.7	4.2e-22	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0172094_4	phrog_94	125.7	5.9e-37	head maturation protease	head and packaging
UniRef90	UHGV-0172094_4	UniRef90_UPI00111E41DA	131.0	3.69e-34	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0172094_4	1232452.BAIB02000007_gene1626	124.0	7.44e-32	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0172094_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0172094_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0172094_4	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_5	phrog_10	129.6	3.8e-38	major head protein	head and packaging
UniRef90	UHGV-0172094_5	UniRef90_A0A2A7B712	703.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0172094_5	1235792.C808_00086	431.0	0	Phage capsid family	N/A
Pfam	UHGV-0172094_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0172094_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0172094_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0172094_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0172094_5	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_6	phrog_749	54.1	0.0000000000000026	N/A	unknown function
UniRef90	UHGV-0172094_6	UniRef90_A0A371IJS1	51.2	0.00000342	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0172094_6	1211817.CCAT010000053_gene2133	64.7	0.00000000000437	N/A	N/A
PHROG	UHGV-0172094_7	phrog_19734	92.2	5.7e-27	N/A	unknown function
UniRef90	UHGV-0172094_7	UniRef90_A0A0D8I708	78.6	4e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0172094_7	349161.Dred_2602	72.4	0.0000000000000164	N/A	N/A
structural_annotation	UHGV-0172094_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172094_8	999413.HMPREF1094_02005	68.6	0.000000000000142	N/A	N/A
structural_annotation	UHGV-0172094_8	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_9	phrog_5	48.0	0.00000000000012	tail completion or Neck1 protein	connector
UniRef90	UHGV-0172094_9	UniRef90_A0A1C6FG30	116.0	6.87e-30	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0172094_9	908340.HMPREF9406_2573	111.0	8.82e-29	N/A	N/A
structural_annotation	UHGV-0172094_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_10	phrog_88	92.1	6.6e-27	major tail protein	tail
UniRef90	UHGV-0172094_10	UniRef90_G9YSC5	110.0	5.74e-27	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0172094_10	33035.JPJF01000039_gene278	75.1	0.0000000000000533	N/A	N/A
NCBIFam	UHGV-0172094_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0172094_10	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_13	phrog_9959	95.7	3e-28	tail length tape measure protein	tail
UniRef90	UHGV-0172094_13	UniRef90_A0A2A7ALS3	673.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0172094_13	596328.HMPREF0578_1241	191.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0172094_13	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0172094_13	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0172094_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0172094_13	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_14	phrog_33	75.1	1.7e-21	distal tail protein Dit	tail
UniRef90	UHGV-0172094_14	UniRef90_A0A173Z1X4	142.0	2.74e-38	Phage-related protein	N/A
eggNOG-mapper	UHGV-0172094_14	908340.HMPREF9406_2569	94.4	1.26e-20	phage tail	N/A
NCBIFam	UHGV-0172094_14	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0172094_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0172094_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_15	phrog_1067	170.8	0	minor head protein	head and packaging
UniRef90	UHGV-0172094_15	UniRef90_A0A2A7AM44	693.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0172094_15	1123263.AUKY01000068_gene489	186.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0172094_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0172094_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0172094_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0172094_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0172094_18	K07273	168.4	0	acm; lysozyme	N/A
PHROG	UHGV-0172094_18	phrog_291	133.7	1.8e-39	endolysin	lysis
UniRef90	UHGV-0172094_18	UniRef90_UPI001D0EE7D8	265.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0172094_18	748224.HMPREF9436_00154	248.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0172094_18	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0172094_18	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0172094_18	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_20	phrog_15303	84.2	1.2e-24	N/A	unknown function
KOfam	UHGV-0172094_22	K23779	46.0	0.0000000000011	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
Pfam	UHGV-0172094_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0172094_22	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_26	phrog_16490	101.2	3.8e-39	N/A	unknown function
eggNOG-mapper	UHGV-0172094_26	1408437.JNJN01000043_gene803	160.0	2.8026e-45	N/A	N/A
PHROG	UHGV-0172094_27	phrog_374	194.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172094_27	UniRef90_A0A7W0C2S3	201.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0172094_27	357276.EL88_11255	198.0	0	N/A	N/A
eggNOG-mapper	UHGV-0172094_28	1408437.JNJN01000043_gene802	103.0	9.32e-27	N/A	N/A
eggNOG-mapper	UHGV-0172094_29	1408437.JNJN01000043_gene801	97.4	2.28e-22	N/A	N/A
KOfam	UHGV-0172094_30	K14059	178.9	0	int; integrase	N/A
PHROG	UHGV-0172094_30	phrog_1	160.2	0	integrase	integration and excision
UniRef90	UHGV-0172094_30	UniRef90_A0A367GI93	221.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0172094_30	1507.HMPREF0262_00307	160.0	6.93643e-43	Phage integrase family	N/A
Pfam	UHGV-0172094_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0172094_30	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0172094_30	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_31	phrog_1373	44.1	0.0000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172094_31	UniRef90_A0A2A7B6N3	179.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0172094_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172094_31	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0172094_31	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0172094_34	K02342	81.7	9.2e-24	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0172094_34	phrog_192	89.4	3.7e-26	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172094_34	UniRef90_UPI001EE95DBE	89.4	2.54e-16	3'-5' exoribonuclease	N/A
eggNOG-mapper	UHGV-0172094_34	665956.HMPREF1032_02791	130.0	4.72e-31	N/A	N/A
PADLOC	UHGV-0172094_34	cd06127	73.8	5.1e-21	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0172094_34	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0172094_34	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0172094_34	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0172094_34	PF13361,PF00533,MF_00157,NF008746,COG2925	N/A	N/A	N/A	N/A
KOfam	UHGV-0172094_36	K22300	51.1	0.00000000000003	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0172094_36	phrog_8	41.3	0.000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172094_36	UniRef90_A0A3D4L0P7	55.5	0.000000127	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0172094_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172094_36	COG3780	N/A	N/A	DNA endonuclease related to intein-encoded endonucleases	N/A
structural_annotation	UHGV-0172094_36	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172094_37	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0172094_40	PF12773	N/A	N/A	Double zinc ribbon	DZR
structural_annotation	UHGV-0172094_43	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_46	phrog_14970	44.3	0.0000000000035	N/A	unknown function
COG	UHGV-0172094_46	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0172094_46	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_47	phrog_72	47.8	0.00000000000028	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0172094_47	411471.SUBVAR_05829	137.0	1e-38	N/A	N/A
Pfam	UHGV-0172094_47	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0172094_47	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0172094_48	K22300	66.8	5.3e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0172094_48	phrog_8	57.9	3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172094_48	UniRef90_UPI0006798E95	67.0	0.0000000000157	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0172094_48	877414.ATWA01000093_gene1925	62.0	0.000000000114	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0172094_48	retron_type_VI_hth_cluster2_1	40.8	0.000000000057	N/A	Retron
Pfam	UHGV-0172094_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172094_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0172094_50	phrog_7566	83.7	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0172094_50	411471.SUBVAR_05830	105.0	2.25e-28	N/A	N/A
KOfam	UHGV-0172094_51	K03111	147.2	1.79366e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0172094_51	phrog_44	151.3	4.2039e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172094_51	UniRef90_A0A329TTF5	201.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0172094_51	748224.HMPREF9436_00638	211.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0172094_51	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0172094_51	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0172094_51	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0172094_51	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0172094_51	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172094_52	748224.HMPREF9436_00735	156.0	2.9147e-43	N/A	N/A
Pfam	UHGV-0172094_52	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0172094_52	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0172094_52	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0172094_54	K03496	206.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0172094_54	phrog_164	153.2	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172094_54	UniRef90_A0A2A7B6H3	355.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0172094_54	411471.SUBVAR_05839	228.0	0	AAA domain	N/A
Pfam	UHGV-0172094_54	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0172094_54	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0172094_54	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0172094_55	K03497	85.4	1.2e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0172094_55	phrog_4715	118.5	5.8e-35	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172094_55	UniRef90_A0A2A7AMC5	278.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0172094_55	411471.SUBVAR_05842	179.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0172094_55	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0172094_55	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0172094_55	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172094_56	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0172094_62	K00571	187.6	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0172094_62	phrog_67	189.6	0	DNA methyltransferase	other
UniRef90	UHGV-0172094_62	UniRef90_A0A1V5NVC0	262.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0172094_62	1474867.A0A076FIB3_9PHYC	247.0	0	N-methyltransferase activity	N/A
PADLOC	UHGV-0172094_62	MTase_II_00037	160.1	0	Type II methyltransferase	RM
Pfam	UHGV-0172094_62	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0172094_62	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0172094_63	phrog_119	56.2	5.5e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172094_63	UniRef90_A0A2A7B6I3	229.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0172094_63	610130.Closa_0739	108.0	3.13e-29	HNH nucleases	N/A
Pfam	UHGV-0172094_63	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0172094_63	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0172094	Yes	42,014	52	100	1
UHGV-0197753	No	20,504	52	50	1