vOTU vOTU-074800

vOTU: vOTU-074800

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-074800
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vSUBGEN-11180 → vOTU-074800
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0119026
Biosample ID	N/A
Genome length (bp)	32,966 bps
CheckV completeness	93.70% (High-quality)
CDS count	49
CDS density	91.33%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1697	Host agreement	87.68
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	37	Host agreement	97.3

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0119026_2	UniRef90_A0A374MZ40	116.0	3.69e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0119026_2	411459.RUMOBE_01706	53.1	0.00000000803	N/A	N/A
Pfam	UHGV-0119026_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0119026_2	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0119026_3	K00571	175.1	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0119026_3	phrog_67	152.1	0	DNA methyltransferase	other
UniRef90	UHGV-0119026_3	UniRef90_A0A412UM21	419.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0119026_3	1226322.HMPREF1545_02860	164.0	0	N/A	N/A
PADLOC	UHGV-0119026_3	MTase_II_00157	145.8	1.4013e-44	Type II methyltransferase	RM
Pfam	UHGV-0119026_3	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0119026_3	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0119026_3	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0119026_4	K01447	58.9	1e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0119026_4	phrog_20388	304.2	0	endolysin	lysis
UniRef90	UHGV-0119026_4	UniRef90_A0A374N1L8	561.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0119026_4	1203606.HMPREF1526_00253	316.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0119026_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0119026_4	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0119026_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0119026_4	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_5	phrog_199	77.4	1.5e-22	holin	lysis
UniRef90	UHGV-0119026_5	UniRef90_A0A2N0ULW7	266.0	0	Holin	N/A
eggNOG-mapper	UHGV-0119026_5	1160721.RBI_I01565	144.0	3.16974e-42	Bacteriophage holin family	N/A
Pfam	UHGV-0119026_5	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0119026_5	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0119026_5	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0119026_5	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
UniRef90	UHGV-0119026_7	UniRef90_A0A374N9Y2	215.0	0	N/A	N/A
structural_annotation	UHGV-0119026_7	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_8	phrog_1067	107.4	4.1e-32	minor head protein	head and packaging
UniRef90	UHGV-0119026_8	UniRef90_A0A1G5CPD2	145.0	5.52e-36	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0119026_8	1462527.CCDM010000003_gene3730	66.2	0.000000009	gp58-like protein	N/A
NCBIFam	UHGV-0119026_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0119026_8	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0119026_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_9	phrog_33	71.8	1.6e-20	distal tail protein Dit	tail
UniRef90	UHGV-0119026_9	UniRef90_A0A1G5CPA2	132.0	9.84e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-0119026_9	1160721.RBI_I01575	82.0	9.71e-16	Phage tail protein	N/A
COG	UHGV-0119026_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0119026_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0119026_10	K20478	46.8	0.000000000000052	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0119026_10	phrog_5218	274.7	0	N/A	unknown function
UniRef90	UHGV-0119026_10	UniRef90_UPI000E474EFE	2092.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0119026_10	908340.HMPREF9406_2570	280.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-0119026_10	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0119026_10	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0119026_10	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0119026_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_12	phrog_88	66.1	5.2e-19	major tail protein	tail
UniRef90	UHGV-0119026_12	UniRef90_A0A1G5CNS8	152.0	7.2307e-43	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0119026_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0119026_12	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0119026_13	UniRef90_UPI000E5564A4	267.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0119026_13	1235792.C808_00089	52.8	0.000000811	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0119026_13	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0119026_13	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0119026_14	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_15	phrog_19734	70.7	1.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0119026_15	86416.Clopa_0343	62.0	0.0000000000798	N/A	N/A
structural_annotation	UHGV-0119026_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_16	phrog_749	54.7	0.0000000000000016	N/A	unknown function
UniRef90	UHGV-0119026_16	UniRef90_A0A1G5CMX8	107.0	2.14e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0119026_16	1211817.CCAT010000053_gene2133	60.1	0.000000000207	N/A	N/A
PHROG	UHGV-0119026_17	phrog_10	123.7	1.8e-36	major head protein	head and packaging
UniRef90	UHGV-0119026_17	UniRef90_UPI000E4BAA71	746.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0119026_17	610130.Closa_0744	320.0	0	Phage capsid family	N/A
Pfam	UHGV-0119026_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0119026_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0119026_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0119026_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0119026_18	K01358	135.9	4.00001e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0119026_18	phrog_94	203.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0119026_18	UniRef90_A0A412ULU1	456.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0119026_18	86416.Clopa_0340	173.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0119026_18	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0119026_18	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0119026_18	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_19	phrog_12	94.1	1.1e-27	portal protein	head and packaging
UniRef90	UHGV-0119026_19	UniRef90_A0A412ULV9	710.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0119026_19	1415774.U728_1254	265.0	0	Phage portal protein	N/A
Pfam	UHGV-0119026_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0119026_19	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0119026_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0119026_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_20	phrog_9	295.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0119026_20	UniRef90_A0A412UM03	1096.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0119026_20	86416.Clopa_0337	635.0	0	Phage Terminase	N/A
Pfam	UHGV-0119026_20	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0119026_20	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0119026_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0119026_20	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_21	phrog_5110	81.9	5.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0119026_21	UniRef90_A0A1M5U1D5	113.0	1.7e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0119026_21	1211817.CCAT010000053_gene2128	100.0	4.45e-26	N/A	N/A
Pfam	UHGV-0119026_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0119026_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_22	phrog_119	66.4	4.1e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0119026_22	UniRef90_A0A412ULY9	216.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0119026_22	1158607.UAU_01026	99.8	8.3e-26	HNH endonuclease	N/A
Pfam	UHGV-0119026_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0119026_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0119026_23	394503.Ccel_3053	53.5	0.000000349	N/A	N/A
structural_annotation	UHGV-0119026_23	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_24	phrog_3584	146.1	2.20004e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0119026_24	1235800.C819_00515	70.5	0.0000000000134	N/A	N/A
structural_annotation	UHGV-0119026_24	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0119026_28	UniRef90_UPI000E4DC4DA	133.0	3.04e-37	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0119026_28	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_29	phrog_2118	117.7	1e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0119026_29	UniRef90_A0A374DVG7	247.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0119026_29	610130.Closa_0730	152.0	0	HNH endonuclease	N/A
Pfam	UHGV-0119026_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0119026_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0119026_29	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_31	phrog_824	146.4	7.84727e-44	N/A	unknown function
UniRef90	UHGV-0119026_31	UniRef90_A0A3D3D6C6	243.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0119026_31	397288.C806_00096	158.0	0	VRR_NUC	N/A
Pfam	UHGV-0119026_31	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0119026_31	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_32	phrog_24518	84.1	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0119026_32	1519439.JPJG01000077_gene922	110.0	2.29e-27	N/A	N/A
UniRef90	UHGV-0119026_33	UniRef90_A0A3D3D7T1	374.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0119026_33	394503.Ccel_3306	57.0	0.00000107	Belongs to the ParB family	N/A
COG	UHGV-0119026_33	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
KOfam	UHGV-0119026_34	K03497	156.2	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0119026_34	phrog_6218	237.8	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0119026_34	UniRef90_A0A3D1WJI5	190.0	0	Chromosome partitioning protein ParB (Fragment)	N/A
eggNOG-mapper	UHGV-0119026_34	1160721.RBI_I01596	214.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0119026_34	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0119026_34	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0119026_34	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0119026_34	PF02195,PF18579,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0119026_36	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_37	phrog_6058	42.4	0.0000000000073	N/A	unknown function
structural_annotation	UHGV-0119026_37	NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_38	phrog_599	41.0	0.000000000036	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0119026_38	UniRef90_UPI0015F48AC0	153.0	0	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0119026_38	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0119026_38	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0119026_39	UniRef90_UPI000E4DC4DA	141.0	2.45999e-40	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0119026_39	PF15597	N/A	N/A	N/A	N/A
KOfam	UHGV-0119026_40	K00390	92.4	4.8e-27	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0119026_40	phrog_424	119.7	2.2e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0119026_40	UniRef90_UPI001C034617	600.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0119026_40	1408437.JNJN01000032_gene2312	336.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0119026_40	BrxP_00001	75.3	4.9e-22	BrxP	BREX
Pfam	UHGV-0119026_40	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0119026_40	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0119026_40	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_42	phrog_585	115.0	4.7e-34	N/A	unknown function
UniRef90	UHGV-0119026_42	UniRef90_UPI00051C896C	143.0	1.32997e-41	N/A	N/A
eggNOG-mapper	UHGV-0119026_42	1033744.CAEL01000029_gene1306	128.0	4.7e-36	N/A	N/A
Pfam	UHGV-0119026_42	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0119026_42	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
UniRef90	UHGV-0119026_44	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0119026_44	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0119026_44	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0119026_45	UniRef90_A0A373XLN2	277.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0119026_45	1235793.C809_00679	99.0	5.83e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0119026_45	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0119026_45	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0119026_46	phrog_1914	146.1	2.00386e-43	N/A	unknown function
UniRef90	UHGV-0119026_46	UniRef90_UPI000E543E50	363.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0119026_46	1160721.RBI_I01604	176.0	0	N/A	N/A
Pfam	UHGV-0119026_46	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0119026_46	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0119026_46	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0119026_47	UniRef90_UPI000E52DA24	769.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-0119026_47	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-0119026_47	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-0119026_48	K14059	107.9	1.5e-31	int; integrase	N/A
PHROG	UHGV-0119026_48	phrog_1	129.1	4.4e-38	integrase	integration and excision
UniRef90	UHGV-0119026_48	UniRef90_A0A1G5CL52	755.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0119026_48	693746.OBV_41260	184.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0119026_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0119026_48	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0119026_48	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0119026_49	1321372.AQQB01000002_gene484	48.1	0.00000114	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0119026	Yes	32,966	40	94	1
UHGV-0126805	No	29,799	40	85	1
UHGV-0122420	No	22,079	40	63	1