vOTU vOTU-074960

vOTU: vOTU-074960

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-074960
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00556 → vGENUS-02008 → vSUBGEN-03140 → vOTU-074960
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0172252
Biosample ID	SAMN09781731
Genome length (bp)	42,445 bps
CheckV completeness	98.53% (High-quality)
CDS count	49
CDS density	95.88%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315	Total connections	36	Host agreement	72.22
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0172252_1	phrog_434	284.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172252_1	UniRef90_A0A3D3XZF3	331.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0172252_1	1121344.JHZO01000003_gene985	268.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0172252_1	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0172252_1	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0172252_1	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0172252_1	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0172252_5	phrog_2113	57.4	2.1e-16	N/A	unknown function
structural_annotation	UHGV-0172252_6	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172252_7	UniRef90_UPI001B1B66C7	72.4	0.00000000000000336	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0172252_7	1111454.HMPREF1250_1029	61.2	0.000000000011	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0172252_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0172252_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0172252_8	K22300	70.8	3e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0172252_8	phrog_8	73.2	5.4e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0172252_8	UniRef90_A0A8B2X256	90.5	2.93e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0172252_8	1462526.BN990_03843	82.0	7.04e-19	Helix-turn-helix domain	N/A
PADLOC	UHGV-0172252_8	retron_type_VI_hth_cluster2_1	55.4	0.0000000000000017	N/A	Retron
Pfam	UHGV-0172252_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0172252_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0172252_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
COG	UHGV-0172252_10	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0172252_10	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0172252_12	K14059	169.2	0	int; integrase	N/A
PHROG	UHGV-0172252_12	phrog_1	158.5	0	integrase	integration and excision
UniRef90	UHGV-0172252_12	UniRef90_A0A8J6JEJ8	224.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0172252_12	742738.HMPREF9460_01344	179.0	0	Phage integrase family	N/A
Pfam	UHGV-0172252_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0172252_12	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0172252_12	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172252_13	UniRef90_A0A843GWV6	86.7	4.93e-20	Rubrerythrin domain-containing protein	N/A
Pfam	UHGV-0172252_13	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin
structural_annotation	UHGV-0172252_13	PF02255,NF007156,COG1447	N/A	N/A	N/A	N/A
UniRef90	UHGV-0172252_16	UniRef90_A0A8D9PDT6	82.0	1.14e-18	Transcriptional regulatory protein	N/A
PHROG	UHGV-0172252_17	phrog_1129	69.3	4.1e-20	holin	lysis
UniRef90	UHGV-0172252_17	UniRef90_A0A2V2CUX8	127.0	1.19e-36	Enolase	N/A
eggNOG-mapper	UHGV-0172252_17	1226322.HMPREF1545_00069	118.0	1.02e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0172252_17	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0172252_17	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0172252_18	phrog_937	66.9	3.6e-19	hemolysin	other
eggNOG-mapper	UHGV-0172252_18	1519439.JPJG01000023_gene533	89.4	5.79e-22	N/A	N/A
PHROG	UHGV-0172252_19	phrog_1493	54.2	0.0000000000000031	endolysin	lysis
UniRef90	UHGV-0172252_19	UniRef90_A0A1C6GMR6	197.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0172252_19	742740.HMPREF9474_01683	109.0	9.36e-25	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0172252_19	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0172252_19	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0172252_19	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0172252_20	phrog_5240	80.0	3.8e-23	tail fiber protein	tail
eggNOG-mapper	UHGV-0172252_20	1410631.JHWZ01000005_gene204	56.6	0.00000372	GDSL-like Lipase/Acylhydrolase	N/A
Pfam	UHGV-0172252_20	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0172252_20	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-0172252_21	phrog_22978	396.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0172252_21	1123288.SOV_4c02780	1177.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-0172252_21	PF13872	N/A	N/A	P-loop containing NTP hydrolase pore-1	AAA_34
Pfam	UHGV-0172252_21	PF13871	N/A	N/A	C-terminal domain on Strawberry notch homologue	Helicase_C_4
Pfam	UHGV-0172252_21	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
COG	UHGV-0172252_21	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
UniRef90	UHGV-0172252_22	UniRef90_R5DCX9	130.0	2.9e-31	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0172252_22	1410650.JHWL01000003_gene2815	132.0	1.73e-32	N/A	N/A
PHROG	UHGV-0172252_23	phrog_372	114.5	8.8e-34	tail protein	tail
UniRef90	UHGV-0172252_23	UniRef90_UPI001EDDCD01	110.0	1.75e-21	N/A	N/A
eggNOG-mapper	UHGV-0172252_23	1399942.U3PFX4_9CAUD	79.0	0.0000000000022	peptidoglycan catabolic process	N/A
Pfam	UHGV-0172252_23	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0172252_23	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0172252_25	phrog_511	241.6	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0172252_25	1410650.JHWL01000003_gene2827	324.0	0	N/A	N/A
structural_annotation	UHGV-0172252_25	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0172252_26	phrog_12105	121.2	5.6e-36	N/A	unknown function
eggNOG-mapper	UHGV-0172252_26	1519439.JPJG01000060_gene1891	67.0	0.00000000000146	N/A	N/A
PHROG	UHGV-0172252_27	phrog_15239	60.1	3.6e-17	N/A	unknown function
PHROG	UHGV-0172252_28	phrog_1357	273.1	0	major head protein	head and packaging
UniRef90	UHGV-0172252_28	UniRef90_A0A2V2GQW4	424.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0172252_28	748224.HMPREF9436_01399	367.0	0	N/A	N/A
Pfam	UHGV-0172252_28	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0172252_28	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0172252_28	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0172252_29	phrog_13908	294.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0172252_29	1410650.JHWL01000003_gene2831	147.0	2.22e-39	N/A	N/A
KOfam	UHGV-0172252_30	K07584	48.7	0.00000000000016	N/A	N/A
PHROG	UHGV-0172252_30	phrog_4478	40.7	0.000000000029	peptidase	other
eggNOG-mapper	UHGV-0172252_30	1009370.ALO_08023	55.8	0.0000000184	Cysteine protease Prp	N/A
Pfam	UHGV-0172252_30	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0172252_30	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0172252_30	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0172252_31	phrog_156	285.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0172252_31	1410650.JHWL01000003_gene2833	518.0	0	N/A	N/A
structural_annotation	UHGV-0172252_31	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0172252_32	K06909	162.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0172252_32	phrog_979	150.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0172252_32	UniRef90_A0A3C0NMI6	669.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0172252_32	1410650.JHWL01000003_gene2834	639.0	0	N/A	N/A
Pfam	UHGV-0172252_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0172252_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0172252_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0172252_36	1123263.AUKY01000096_gene1822	73.2	0.00000000000043	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0172252_36	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0172252_40	phrog_757	181.2	0	DNA methyltransferase	other
UniRef90	UHGV-0172252_40	UniRef90_A0A417JTT5	254.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0172252_40	1095750.HMPREF9970_0173	250.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0172252_40	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0172252_40	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0172252_41	K00390	107.7	1.3e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0172252_41	phrog_424	130.3	1.1e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0172252_41	UniRef90_UPI0009E1B041	360.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0172252_41	1408437.JNJN01000032_gene2312	344.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0172252_41	BrxP_00001	68.1	3.6e-20	BrxP	BREX
Pfam	UHGV-0172252_41	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0172252_41	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0172252_41	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0172252_42	K21919	85.3	5.9e-25	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0172252_42	phrog_923	87.4	1e-25	N/A	unknown function
UniRef90	UHGV-0172252_42	UniRef90_UPI001A9B9B76	153.0	2.8026e-44	pentapeptide repeat-containing protein	N/A
Pfam	UHGV-0172252_42	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-0172252_42	PF13599,NF000421,COG1357	N/A	N/A	N/A	N/A
PHROG	UHGV-0172252_45	phrog_824	137.2	5.79997e-41	N/A	unknown function
UniRef90	UHGV-0172252_45	UniRef90_UPI00189BCDD7	141.0	8.83995e-41	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0172252_45	1408428.JNJP01000030_gene973	112.0	1.48e-29	VRR_NUC	N/A
PHROG	UHGV-0172252_47	phrog_8489	164.7	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0172252_47	1415774.U728_867	125.0	3.81e-31	DnaD domain protein	N/A
COG	UHGV-0172252_47	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0172252_48	K07455	172.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0172252_48	phrog_148	177.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0172252_48	UniRef90_UPI000F05C9E1	305.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0172252_48	1243664.CAVL020000020_gene3198	182.0	0	RecT family	N/A
Pfam	UHGV-0172252_48	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0172252_48	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0172252_48	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0172252_48	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0172252	Yes	42,445	55	99	1