vOTU vOTU-075494

vOTU: vOTU-075494

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-075494
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-00447 → vSUBGEN-40563 → vOTU-075494
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0151447
Biosample ID	SAMN06110222
Genome length (bp)	32,578 bps
CheckV completeness	93.16% (High-quality)
CDS count	53
CDS density	92.36%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	515	Host agreement	92.23
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	649	Host agreement	92.91

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0151447_1	UniRef90_R5QKX6	66.6	0.000000000000391	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	N/A
eggNOG-mapper	UHGV-0151447_1	1280698.AUJS01000002_gene2767	75.1	0.00000000000000427	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
COG	UHGV-0151447_1	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
KOfam	UHGV-0151447_2	K06400	318.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0151447_2	phrog_95	346.1	0	integrase	integration and excision
UniRef90	UHGV-0151447_2	UniRef90_B0NAW3	615.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-0151447_2	411468.CLOSCI_00582	615.0	0	Recombinase	N/A
Pfam	UHGV-0151447_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0151447_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0151447_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0151447_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0151447_2	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0151447_3	K07171	56.6	6.9e-17	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0151447_3	phrog_1412	157.1	0	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0151447_3	UniRef90_UPI001BC64A01	310.0	0	Type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0151447_3	1235792.C808_05257	201.0	0	Toxic component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0151447_3	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0151447_3	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0151447_3	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0151447_4	1408311.JNJM01000007_gene933	152.0	2.29953e-42	N/A	N/A
Pfam	UHGV-0151447_4	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
KOfam	UHGV-0151447_6	K22299	53.1	0.0000000000000079	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0151447_6	phrog_8	42.0	0.00000000002	transcriptional regulator	transcription regulation
UniRef90	UHGV-0151447_6	UniRef90_A0A350VIR9	250.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0151447_6	1005705.HMPREF9967_0944	105.0	5.81e-26	Peptidase S24-like	N/A
Pfam	UHGV-0151447_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0151447_6	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0151447_6	PF01381,MF_02017,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0151447_7	K07729	49.1	0.00000000000013	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0151447_7	phrog_5823	47.7	0.00000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-0151447_7	UniRef90_A0A350VIS0	119.0	2.73e-34	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0151447_7	1123263.AUKY01000072_gene2113	64.7	0.000000000000293	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0151447_7	retron_type_VI_hth_cluster2_1	41.6	0.000000000039	N/A	Retron
Pfam	UHGV-0151447_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0151447_7	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0151447_11	PF09486,TIGR03090,COG5420	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0151447_12	PF18066,NF007780,COG1544	N/A	N/A	N/A	N/A
KOfam	UHGV-0151447_15	K03427	53.2	0.0000000000000048	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0151447_15	phrog_5696	230.7	0	N/A	unknown function
UniRef90	UHGV-0151447_15	UniRef90_A0A0M6WYD5	439.0	0	N6_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0151447_15	1215092.PA6_009_00670	148.0	3.16007e-41	N-6 DNA Methylase	N/A
Pfam	UHGV-0151447_15	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0151447_15	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0151447_15	COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0151447_16	K04763	222.2	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0151447_16	phrog_1	157.0	0	integrase	integration and excision
UniRef90	UHGV-0151447_16	UniRef90_A0A6L5YHS5	343.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0151447_16	397291.C804_01139	236.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0151447_16	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0151447_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0151447_16	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0151447_16	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0151447_17	K14059	158.9	0	int; integrase	N/A
PHROG	UHGV-0151447_17	phrog_1	154.7	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0151447_17	UniRef90_A0A0M6WVP0	598.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0151447_17	999413.HMPREF1094_00568	315.0	0	Phage integrase family	N/A
Pfam	UHGV-0151447_17	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0151447_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0151447_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0151447_17	PF00589,PF14659,MF_02055,NF001399,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0151447_22	476272.RUMHYD_01923	48.9	0.00000111	N/A	N/A
PHROG	UHGV-0151447_23	phrog_10714	51.4	0.000000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0151447_23	97139.C824_00134	50.1	0.00000279	N/A	N/A
PHROG	UHGV-0151447_27	phrog_3584	235.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0151447_27	UniRef90_A0A4P8IFK4	188.0	0	N/A	N/A
eggNOG-mapper	UHGV-0151447_27	411902.CLOBOL_03891	387.0	0	N/A	N/A
structural_annotation	UHGV-0151447_27	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0151447_28	phrog_36	60.8	2.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0151447_28	UniRef90_UPI001D05F87A	73.2	0.0000000000000626	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0151447_28	588581.Cpap_2562	60.8	0.000000000885	N/A	N/A
structural_annotation	UHGV-0151447_28	PF07374,MF_00674,NF001074	N/A	N/A	N/A	N/A
KOfam	UHGV-0151447_29	K07451	43.0	0.0000000000089	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0151447_29	phrog_119	77.4	2.1e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0151447_29	UniRef90_A0A0M6WIX4	218.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0151447_29	330396.A8ATF8_9CAUD	85.1	4.59e-20	HNH endonuclease	N/A
Pfam	UHGV-0151447_29	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0151447_30	phrog_5110	97.6	8.5e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0151447_30	UniRef90_A0A1C5LZF0	104.0	1.14e-26	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0151447_30	349161.Dred_2608	80.1	3.32e-18	N/A	N/A
Pfam	UHGV-0151447_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0151447_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0151447_31	phrog_9	246.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0151447_31	UniRef90_D4M588	1016.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0151447_31	1232452.BAIB02000007_gene1629	526.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0151447_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0151447_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0151447_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0151447_31	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0151447_32	phrog_12	61.3	1.1e-17	portal protein	head and packaging
UniRef90	UHGV-0151447_32	UniRef90_UPI00156D5DC9	555.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0151447_32	1232452.BAIB02000007_gene1627	282.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0151447_32	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0151447_32	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0151447_32	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0151447_33	K01358	118.1	1.1e-34	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0151447_33	phrog_94	194.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0151447_33	UniRef90_A0A0M6WHX9	509.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0151447_33	1235792.C808_00085	211.0	0	Clp protease	N/A
Pfam	UHGV-0151447_33	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0151447_33	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0151447_33	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0151447_34	phrog_10	76.3	3.7e-22	major head protein	head and packaging
UniRef90	UHGV-0151447_34	UniRef90_UPI00156F222D	636.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0151447_34	1232452.BAIB02000007_gene1625	485.0	0	Phage capsid family	N/A
Pfam	UHGV-0151447_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0151447_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0151447_34	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0151447_34	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0151447_36	UniRef90_A0A844KCF4	191.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-0151447_36	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0151447_37	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0151447_38	phrog_5	56.2	0.000000000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-0151447_38	UniRef90_D4M595	168.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0151447_38	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0151447_38	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0151447_39	phrog_88	106.4	2.4e-31	major tail protein	tail
UniRef90	UHGV-0151447_39	UniRef90_A0A1Q9J4Y1	284.0	0	Phage tail protein	N/A
NCBIFam	UHGV-0151447_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0151447_39	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0151447_39	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0151447_41	phrog_1272	215.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0151447_41	UniRef90_A0A350VIV1	1084.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0151447_41	1035184.HMPREF1042_1328	293.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0151447_41	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0151447_41	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0151447_41	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0151447_42	phrog_33	60.5	4.4e-17	distal tail protein Dit	tail
UniRef90	UHGV-0151447_42	UniRef90_A0A350VIV2	359.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0151447_42	1232452.BAIB02000007_gene1615	219.0	0	phage tail	N/A
NCBIFam	UHGV-0151447_42	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0151447_42	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0151447_42	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0151447_43	phrog_13289	371.0	0	tail protein	tail
UniRef90	UHGV-0151447_43	UniRef90_A0A0M6WI67	1177.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0151447_43	1235798.C817_02568	437.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0151447_43	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0151447_43	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0151447_43	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0151447_43	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0151447_44	phrog_11037	145.7	4.40008e-43	N/A	unknown function
UniRef90	UHGV-0151447_44	UniRef90_A0A0M6WKQ1	366.0	0	Phage_lysozyme2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0151447_44	33035.JPJF01000023_gene3229	170.0	0	N/A	N/A
Pfam	UHGV-0151447_44	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
structural_annotation	UHGV-0151447_44	PF18013	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0151447_45	1235798.C817_04596	67.4	0.000000000122	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0151447_45	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0151447_46	phrog_15594	84.5	9.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0151447_46	862969.SCI_1223	56.6	0.00000000401	N/A	N/A
structural_annotation	UHGV-0151447_46	PF16640,TIGR04488	N/A	N/A	N/A	N/A
COG	UHGV-0151447_47	COG1262	N/A	N/A	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	N/A
PHROG	UHGV-0151447_48	phrog_24103	82.7	7.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0151447_48	1118055.CAGU01000013_gene761	84.0	5.93e-17	N/A	N/A
PHROG	UHGV-0151447_49	phrog_31573	70.5	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0151447_49	1410622.JNKY01000013_gene1449	89.4	2.03e-16	N/A	N/A
structural_annotation	UHGV-0151447_49	PF14606,PF01664,NF007819,COG2845	N/A	N/A	N/A	N/A
KOfam	UHGV-0151447_50	K07273	159.0	0	acm; lysozyme	N/A
PHROG	UHGV-0151447_50	phrog_291	128.4	7.7e-38	endolysin	lysis
UniRef90	UHGV-0151447_50	UniRef90_A0A174GRH8	656.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0151447_50	397287.C807_01339	224.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0151447_50	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0151447_50	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0151447_50	PF01183,PF01471,MF_01672,COG3757,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0151447_51	phrog_199	61.6	1.1e-17	holin	lysis
UniRef90	UHGV-0151447_51	UniRef90_A0A349YRM9	236.0	0	Holin	N/A
eggNOG-mapper	UHGV-0151447_51	411468.CLOSCI_00532	180.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0151447_51	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0151447_51	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0151447_51	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0151447_51	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0151447_53	phrog_13890	64.8	1e-18	N/A	unknown function
UniRef90	UHGV-0151447_53	UniRef90_A0A7X5I8W7	70.9	0.00000000000000754	Arc family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0151447_53	877414.ATWA01000049_gene449	47.4	0.00000235	N/A	N/A
Pfam	UHGV-0151447_53	PF09274	N/A	N/A	ParG	ParG

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0151447	Yes	32,578	40	93	1