vOTU vOTU-075583

vOTU: vOTU-075583

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-075583
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-20734 → vSUBGEN-41042 → vOTU-075583
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0004658
Biosample ID	SAMEA4765999
Genome length (bp)	32,434 bps
CheckV completeness	91.78% (High-quality)
CDS count	45
CDS density	90.56%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter	Total connections	294	Host agreement	78.91
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	12	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0004658_1	K18830	68.5	1.1e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0004658_1	phrog_4	51.6	0.000000000000023	transcriptional repressor	transcription regulation
UniRef90	UHGV-0004658_1	UniRef90_A0A1Q6K9L5	232.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0004658_1	1280698.AUJS01000007_gene1002	154.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0004658_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0004658_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0004658_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004658_3	COG1321	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004658_5	PF07378,MF_00783,COG5443	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_6	phrog_6058	66.1	3e-19	N/A	unknown function
UniRef90	UHGV-0004658_6	UniRef90_A0A4Q7P3C7	114.0	1.98e-31	Prolyl-tRNA synthetase	N/A
eggNOG-mapper	UHGV-0004658_6	411460.RUMTOR_02008	114.0	6.71e-32	N/A	N/A
PHROG	UHGV-0004658_9	phrog_3584	150.0	1.26117e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0004658_9	665950.HMPREF1025_02552	310.0	0	N/A	N/A
structural_annotation	UHGV-0004658_9	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004658_10	665950.HMPREF1025_02551	59.7	0.0000000000849	RNase H	N/A
COG	UHGV-0004658_10	COG0328	N/A	N/A	Ribonuclease HI	N/A
UniRef90	UHGV-0004658_11	UniRef90_A0A174L2W3	53.1	0.000000257	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0004658_11	1235792.C808_03083	51.2	0.00000035	RNase H	N/A
COG	UHGV-0004658_11	COG0328	N/A	N/A	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0004658_12	1235792.C808_00065	246.0	0	N/A	N/A
PHROG	UHGV-0004658_13	phrog_8470	394.8	0	N/A	unknown function
UniRef90	UHGV-0004658_13	UniRef90_UPI001D086F83	941.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0004658_13	97139.C824_00039	1130.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0004658_13	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0004658_13	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_14	phrog_15077	107.5	2.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0004658_14	97139.C824_05986	344.0	0	N/A	N/A
structural_annotation	UHGV-0004658_14	PF11300,NF033725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004658_15	1196322.A370_05726	66.6	0.00000000000029	N/A	N/A
PHROG	UHGV-0004658_16	phrog_7566	115.6	1.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-0004658_16	665950.HMPREF1025_02547	176.0	0	N/A	N/A
PHROG	UHGV-0004658_21	phrog_36	87.5	1.5e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-0004658_21	UniRef90_UPI001899709D	224.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004658_21	658655.HMPREF0988_02569	216.0	0	sigma factor activity	N/A
Pfam	UHGV-0004658_21	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0004658_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0004658_21	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0004658_22	K07451	47.5	0.00000000000034	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0004658_22	phrog_119	80.1	2.8e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004658_22	UniRef90_A0A1Q6K9L9	223.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0004658_22	1232452.BAIB02000007_gene1631	97.4	7.63e-25	HNH nucleases	N/A
Pfam	UHGV-0004658_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0004658_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0004658_23	phrog_5110	100.4	1e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0004658_23	UniRef90_A0A1C5LZF0	99.0	1.97e-24	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0004658_23	1211817.CCAT010000008_gene938	80.9	1e-17	Phage terminase, small subunit	N/A
Pfam	UHGV-0004658_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0004658_23	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004658_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_24	phrog_9	259.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0004658_24	UniRef90_D4M588	1115.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0004658_24	1232452.BAIB02000007_gene1629	530.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0004658_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0004658_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0004658_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0004658_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_25	phrog_12	65.5	3.7e-19	portal protein	head and packaging
UniRef90	UHGV-0004658_25	UniRef90_UPI00156D5DC9	588.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0004658_25	1232452.BAIB02000007_gene1627	280.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0004658_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0004658_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0004658_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0004658_26	K01358	113.7	2.3e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0004658_26	phrog_94	176.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0004658_26	UniRef90_D4M590	503.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0004658_26	1235792.C808_00085	209.0	0	Clp protease	N/A
Pfam	UHGV-0004658_26	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0004658_26	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0004658_26	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_27	phrog_10	89.0	4.5e-26	major head protein	head and packaging
UniRef90	UHGV-0004658_27	UniRef90_D4M591	723.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0004658_27	1232452.BAIB02000007_gene1625	473.0	0	Phage capsid family	N/A
Pfam	UHGV-0004658_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0004658_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0004658_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0004658_27	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_28	phrog_749	41.7	0.00000000002	N/A	unknown function
UniRef90	UHGV-0004658_29	UniRef90_D4M593	241.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
NCBIFam	UHGV-0004658_29	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0004658_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004658_30	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_31	phrog_5	47.8	0.00000000000034	tail completion or Neck1 protein	connector
UniRef90	UHGV-0004658_31	UniRef90_D4M595	244.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0004658_31	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0004658_31	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_32	phrog_88	96.9	2.3e-28	major tail protein	tail
UniRef90	UHGV-0004658_32	UniRef90_D4M596	391.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-0004658_32	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0004658_32	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0004658_32	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_35	phrog_1272	210.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0004658_35	UniRef90_A0A373N7M8	1118.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0004658_35	1035184.HMPREF1042_1328	308.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0004658_35	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0004658_35	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0004658_35	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0004658_36	phrog_33	65.9	9.8e-19	distal tail protein Dit	tail
UniRef90	UHGV-0004658_36	UniRef90_D4M599	457.0	0	Phage putative tail component, N-terminal domain	N/A
eggNOG-mapper	UHGV-0004658_36	1235798.C817_02569	206.0	0	tail component	N/A
COG	UHGV-0004658_36	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0004658_36	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_37	phrog_13289	408.6	0	tail protein	tail
UniRef90	UHGV-0004658_37	UniRef90_A0A1Q6KA70	1174.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0004658_37	1235798.C817_02568	470.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0004658_37	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0004658_37	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0004658_37	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0004658_37	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_38	phrog_14030	132.1	2.9e-39	N/A	unknown function
UniRef90	UHGV-0004658_38	UniRef90_A0A1Q6K9M8	657.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0004658_38	33035.JPJF01000093_gene2240	310.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0004658_38	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0004658_38	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0004658_38	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0004658_38	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_39	phrog_11541	41.2	0.000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0004658_39	556261.HMPREF0240_03316	172.0	0	GDSL-like Lipase/Acylhydrolase	N/A
Pfam	UHGV-0004658_40	PF21732	N/A	N/A	N/A	DUF6864
structural_annotation	UHGV-0004658_40	PF21732	N/A	N/A	N/A	N/A
PHROG	UHGV-0004658_42	phrog_4105	88.2	7.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0004658_42	411459.RUMOBE_00911	173.0	0	N/A	N/A
PHROG	UHGV-0004658_43	phrog_18218	136.3	8.60005e-41	N/A	unknown function
UniRef90	UHGV-0004658_43	UniRef90_A0A373SUI3	192.0	0	Ribonuclease	N/A
eggNOG-mapper	UHGV-0004658_43	658655.HMPREF0988_02546	155.0	0	N/A	N/A
structural_annotation	UHGV-0004658_43	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004658_44	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-0004658_45	K07273	187.1	0	acm; lysozyme	N/A
PHROG	UHGV-0004658_45	phrog_291	146.0	3.09687e-43	endolysin	lysis
UniRef90	UHGV-0004658_45	UniRef90_A0A564SYY2	661.0	0	Glycosyl hydrolases family 25	N/A
eggNOG-mapper	UHGV-0004658_45	515620.EUBELI_01316	206.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0004658_45	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0004658_45	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0004658_45	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0004658	Yes	32,434	42	92	1