Viral OTU vOTU-075698

vOTU: vOTU-075698

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-075698
Number of Genomes	7
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00313 → vGENUS-00344 → vSUBGEN-00300 → vOTU-075698
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0082833
Biosample ID	SAMEA2737793
Length	33,845 bps
CheckV Completeness	99.90% (High-quality)
CDS Count	47
CDS Density	94.43%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0082833_1	K14059	142.1	6.89999e-42	int; integrase	N/A
PHROG	UHGV-0082833_1	phrog_1	150.8	1.26117e-44	integrase	integration and excision
UniRef90	UHGV-0082833_1	UniRef90_A0A1Q6T3G6	635.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0082833_1	428125.CLOLEP_02743	85.9	0.00000000000000138	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0082833_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0082833_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0082833_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0082833_2	K02342	191.0	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0082833_2	phrog_192	156.8	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082833_2	UniRef90_A0A1Y3SB26	234.0	0	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0082833_2	1203606.HMPREF1526_00999	183.0	0	EXOIII	N/A
PADLOC	UHGV-0082833_2	cd06127	130.5	1.2e-38	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0082833_2	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0082833_2	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0082833_2	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
KOfam	UHGV-0082833_3	K01356	147.3	1.69557e-43	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0082833_3	phrog_4	118.7	6.3e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0082833_3	UniRef90_A0A1Q6T3E1	398.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0082833_3	411483.FAEPRAA2165_03041	156.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0082833_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0082833_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0082833_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0082833_3	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0082833_4	K22300	42.2	0.000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0082833_4	phrog_8	51.4	0.000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0082833_4	UniRef90_A0A367GFH2	103.0	9.83e-28	Transcriptional regulator	N/A
Pfam	UHGV-0082833_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0082833_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0082833_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0082833_5	517418.Ctha_0322	69.7	0.00000000000166	N/A	N/A
structural_annotation	UHGV-0082833_5	PF18186,NF033632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082833_7	COG2005	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_9	phrog_10280	47.8	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0082833_9	742738.HMPREF9460_02068	58.9	0.0000002	N/A	N/A
COG	UHGV-0082833_10	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0082833_10	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_11	phrog_72	47.0	0.00000000000027	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0082833_11	411471.SUBVAR_05829	209.0	0	N/A	N/A
structural_annotation	UHGV-0082833_11	PF05772,NF007281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082833_12	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_13	phrog_7566	75.0	7.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0082833_13	411471.SUBVAR_05830	119.0	8.77e-34	N/A	N/A
PHROG	UHGV-0082833_14	phrog_997	113.1	1.8e-33	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082833_14	UniRef90_UPI001165C3F9	80.5	4.78e-17	replication terminator protein	N/A
eggNOG-mapper	UHGV-0082833_14	411471.SUBVAR_05832	159.0	0	N/A	N/A
PHROG	UHGV-0082833_15	phrog_1029	201.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0082833_15	411471.SUBVAR_05833	238.0	0	N/A	N/A
structural_annotation	UHGV-0082833_15	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-0082833_16	K03111	127.5	1.7e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0082833_16	phrog_44	133.9	1.2e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082833_16	UniRef90_A0A1Q6T3F1	273.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0082833_16	411471.SUBVAR_04646	176.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0082833_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0082833_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0082833_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0082833_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0082833_16	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_17	phrog_678	75.6	8.4e-22	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082833_17	UniRef90_A0A6N8H2D2	378.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0082833_17	411471.SUBVAR_05835	151.0	7.73937e-42	Helix-turn-helix domain	N/A
Pfam	UHGV-0082833_17	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0082833_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0082833_17	PF13730,MF_01909,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0082833_18	K02314	229.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0082833_18	phrog_19	214.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082833_18	UniRef90_A0A6N8GZX5	809.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0082833_18	411471.SUBVAR_05838	420.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0082833_18	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0082833_18	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0082833_18	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0082833_18	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0082833_19	K03496	219.2	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0082833_19	phrog_164	169.8	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082833_19	UniRef90_A0A6N8H6J9	386.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0082833_19	411471.SUBVAR_05839	278.0	0	AAA domain	N/A
Pfam	UHGV-0082833_19	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0082833_19	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0082833_19	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0082833_20	K03497	84.9	1.5e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0082833_20	phrog_4715	127.9	4.5e-38	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082833_20	UniRef90_A0A6N8H6R0	832.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0082833_20	411471.SUBVAR_05842	383.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0082833_20	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0082833_20	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0082833_20	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_22	phrog_36	65.6	8.7e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0082833_22	UniRef90_A0A6N8H4L3	164.0	0	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-0082833_22	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0082833_22	PF04545,TIGR02984	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_23	phrog_119	66.9	3e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082833_23	UniRef90_UPI00195B555F	181.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0082833_23	543734.LCABL_11060	104.0	9.56e-28	HNH endonuclease	N/A
Pfam	UHGV-0082833_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0082833_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0082833_24	phrog_1066	88.4	6.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0082833_24	1094508.Tsac_2428	98.2	5.16e-25	N/A	N/A
structural_annotation	UHGV-0082833_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_25	phrog_9	333.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0082833_25	UniRef90_A0A8J6TY49	888.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0082833_25	411471.SUBVAR_05848	790.0	0	large subunit	N/A
Pfam	UHGV-0082833_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0082833_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0082833_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0082833_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_26	phrog_12	118.1	6.1e-35	portal protein	head and packaging
UniRef90	UHGV-0082833_26	UniRef90_UPI00195C5E58	652.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0082833_26	742740.HMPREF9474_04306	593.0	0	Phage portal protein	N/A
Pfam	UHGV-0082833_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0082833_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0082833_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0082833_27	K06904	120.5	1.9e-35	N/A	N/A
PHROG	UHGV-0082833_27	phrog_80	128.5	7.2e-38	head maturation protease	head and packaging
UniRef90	UHGV-0082833_27	UniRef90_A0A1C5W530	270.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0082833_27	411471.SUBVAR_05851	250.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0082833_27	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0082833_27	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0082833_27	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_28	phrog_10	56.1	5.3e-16	major head protein	head and packaging
UniRef90	UHGV-0082833_28	UniRef90_A0A1C5W5F9	444.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0082833_28	742740.HMPREF9474_04304	398.0	0	Phage capsid family	N/A
Pfam	UHGV-0082833_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0082833_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0082833_28	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_29	phrog_5223	71.4	8.7e-21	neck protein	connector
UniRef90	UHGV-0082833_29	UniRef90_UPI00195CBB4A	139.0	6.21994e-41	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0082833_29	411471.SUBVAR_05853	105.0	2.35e-28	N/A	N/A
structural_annotation	UHGV-0082833_29	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_30	phrog_1951	70.9	1.4e-20	head-tail adaptor	connector
UniRef90	UHGV-0082833_30	UniRef90_UPI00195B41A2	153.0	0	phage head closure protein	N/A
NCBIFam	UHGV-0082833_30	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0082833_30	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_31	phrog_5	49.4	0.0000000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-0082833_31	UniRef90_UPI000684DFDC	59.7	0.0000000154	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0082833_31	1195236.CTER_5108	78.6	1.16e-16	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0082833_31	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0082833_31	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_33	phrog_88	46.6	0.00000000000053	major tail protein	tail
structural_annotation	UHGV-0082833_33	PF06488,TIGR01603	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082833_34	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_36	phrog_8462	120.8	8.5e-38	tail length tape measure protein	tail
UniRef90	UHGV-0082833_36	UniRef90_A0A174XMM8	260.0	0	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-0082833_36	1195236.CTER_5104	281.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0082833_36	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0082833_36	TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-0082833_37	UniRef90_A0A3D0W045	223.0	0	Fibronectin type-III domain-containing protein	N/A
structural_annotation	UHGV-0082833_37	PF02010,PF06995,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_38	phrog_26795	87.6	8.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0082833_38	742740.HMPREF9474_04294	124.0	1.11e-29	N/A	N/A
structural_annotation	UHGV-0082833_38	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082833_39	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0082833_40	PF16407	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_41	phrog_5302	167.0	0	tail protein	tail
UniRef90	UHGV-0082833_41	UniRef90_A0A1F8V1G3	134.0	1.02e-29	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0082833_41	411470.RUMGNA_00248	146.0	9.01e-35	Phage tail-collar fibre protein	N/A
COG	UHGV-0082833_41	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-0082833_42	K00986	76.8	2.9e-22	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0082833_42	phrog_1423	146.6	1.90577e-43	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0082833_42	UniRef90_UPI0012B5656A	194.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0082833_42	411468.CLOSCI_01505	150.0	6.8e-39	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0082833_42	icity0040	50.9	0.000000000000027	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0082833_42	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0082833_42	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0082833_42	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_43	phrog_4912	70.2	3.6e-20	tail fiber assembly	tail
UniRef90	UHGV-0082833_43	UniRef90_UPI0009FB0689	63.5	0.000000000472	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0082833_43	1226322.HMPREF1545_01055	62.0	0.000000000209	N/A	N/A
Pfam	UHGV-0082833_43	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0082833_43	PF16778	N/A	N/A	N/A	N/A
KOfam	UHGV-0082833_45	K19304	117.0	2.1e-34	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0082833_45	phrog_10030	80.8	5.1e-24	tail length tape measure protein	tail
UniRef90	UHGV-0082833_45	UniRef90_A0A6N8H6M3	252.0	0	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0082833_45	264732.Moth_2422	97.1	4.14e-20	G5 domain protein	N/A
Pfam	UHGV-0082833_45	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0082833_45	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0082833_45	PF01551,MF_00664,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0082833_46	phrog_1863	68.4	6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0082833_46	693746.OBV_18260	102.0	1.57e-27	N/A	N/A
PHROG	UHGV-0082833_47	phrog_13256	55.0	9.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0082833_47	1226322.HMPREF1545_00132	53.5	0.0000000131	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0082833	Yes	33,845	58	100	1
UHGV-2203987	No	34,481	58	100	1
UHGV-1464551	No	28,997	57	88	1
UHGV-1484201	No	25,363	57	77	1
UHGV-1537453	No	20,894	58	63	1
UHGV-1804618	No	15,755	59	48	1
UHGV-1772381	No	15,677	59	48	1