vOTU vOTU-076041

vOTU: vOTU-076041

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-076041
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-02965 → vGENUS-03978 → vSUBGEN-39290 → vOTU-076041
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1485978
Biosample ID	N/A
Genome length (bp)	39,211 bps
CheckV completeness	99.90% (High-quality)
CDS count	56
CDS density	91.56%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A	Total connections	93	Host agreement	93.55
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	7	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1485978_3	phrog_7566	101.2	4.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-1485978_3	1280698.AUJS01000007_gene1020	251.0	0	N/A	N/A
PHROG	UHGV-1485978_4	phrog_15077	94.0	2.9e-27	N/A	unknown function
UniRef90	UHGV-1485978_4	UniRef90_A0A3A6HZA9	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-1485978_4	1280698.AUJS01000007_gene1019	700.0	0	N/A	N/A
structural_annotation	UHGV-1485978_4	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_5	phrog_8470	208.1	0	N/A	unknown function
UniRef90	UHGV-1485978_5	UniRef90_UPI001C01E393	822.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1485978_5	1280698.AUJS01000007_gene1018	1306.0	0	N/A	N/A
Pfam	UHGV-1485978_5	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1485978_5	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_6	phrog_4433	57.9	3.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-1485978_6	1280698.AUJS01000007_gene1017	382.0	0	N/A	N/A
structural_annotation	UHGV-1485978_6	PF12120,NF000318	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1485978_7	1280698.AUJS01000007_gene1016	310.0	0	N/A	N/A
KOfam	UHGV-1485978_8	K03469	57.1	3.4e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1485978_8	phrog_531	57.6	2.6e-16	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1485978_8	UniRef90_A0A6N9JSQ7	281.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1485978_8	1280698.AUJS01000007_gene1015	278.0	0	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-1485978_8	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1485978_8	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1485978_8	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_10	phrog_3584	152.6	2.8026e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1485978_10	1280698.AUJS01000007_gene1013	513.0	0	N/A	N/A
structural_annotation	UHGV-1485978_10	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-1485978_19	K06400	341.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1485978_19	phrog_95	377.6	0	integrase	integration and excision
UniRef90	UHGV-1485978_19	UniRef90_A0A173SBX0	953.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-1485978_19	411468.CLOSCI_00582	660.0	0	Recombinase	N/A
Pfam	UHGV-1485978_19	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1485978_19	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1485978_19	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1485978_19	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1485978_19	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1485978_20	UniRef90_R6G3J8	61.2	0.0000000000451	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	N/A
eggNOG-mapper	UHGV-1485978_20	1280698.AUJS01000002_gene2767	79.3	1.81e-16	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
COG	UHGV-1485978_20	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
KOfam	UHGV-1485978_21	K01448	107.9	1.1e-31	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1485978_21	phrog_435	179.4	0	endolysin	lysis
UniRef90	UHGV-1485978_21	UniRef90_A0A174JR12	533.0	0	N-acetylmuramoyl-L-alanine amidase LytC	N/A
eggNOG-mapper	UHGV-1485978_21	411461.DORFOR_01187	164.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1485978_21	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1485978_21	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1485978_21	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_23	phrog_443	50.2	0.000000000000065	holin	lysis
UniRef90	UHGV-1485978_23	UniRef90_UPI001570A68C	131.0	1.34e-38	holin	N/A
eggNOG-mapper	UHGV-1485978_23	411462.DORLON_00825	94.0	1.64e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1485978_23	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1485978_23	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_24	phrog_4105	57.7	2e-16	N/A	unknown function
eggNOG-mapper	UHGV-1485978_24	537013.CLOSTMETH_01753	53.5	0.0000000681	N/A	N/A
UniRef90	UHGV-1485978_26	UniRef90_UPI001C0EBDDC	75.9	0.000000000000163	pyocin knob domain-containing protein	N/A
PHROG	UHGV-1485978_27	phrog_6616	544.6	0	tail protein	tail
UniRef90	UHGV-1485978_27	UniRef90_A0A1C5RZB4	511.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1485978_27	476272.RUMHYD_01992	295.0	0	N/A	N/A
Pfam	UHGV-1485978_27	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1485978_27	PF05954,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_28	phrog_1194	96.3	2.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-1485978_28	1293597.BN147_01415	67.0	0.00000000000114	N/A	N/A
Pfam	UHGV-1485978_28	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1485978_28	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_29	phrog_1535	286.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1485978_29	UniRef90_A0A1C5L9Y5	501.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1485978_29	1304866.K413DRAFT_3046	144.0	6.56e-32	N/A	N/A
COG	UHGV-1485978_29	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-1485978_30	phrog_183	56.9	2.8e-16	tail chaperone protein	tail
UniRef90	UHGV-1485978_30	UniRef90_UPI0011DE12FE	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-1485978_30	742733.HMPREF9469_01816	125.0	7.26e-35	N/A	N/A
Pfam	UHGV-1485978_30	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-1485978_30	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_31	phrog_158	60.4	3.9e-17	major tail protein	tail
UniRef90	UHGV-1485978_31	UniRef90_A0A1M7JWZ7	194.0	0	Phage tail tube protein, TTP	N/A
eggNOG-mapper	UHGV-1485978_31	742733.HMPREF9469_01817	171.0	0	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1485978_31	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_32	phrog_78	45.3	0.0000000000016	tail terminator	connector
eggNOG-mapper	UHGV-1485978_32	1280689.AUJC01000003_gene971	138.0	6.95997e-41	N/A	N/A
structural_annotation	UHGV-1485978_32	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_33	phrog_5	80.9	1.9e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-1485978_33	UniRef90_UPI0011DDF215	225.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1485978_33	742733.HMPREF9469_01819	176.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
NCBIFam	UHGV-1485978_33	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1485978_33	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_34	phrog_2168	88.3	4.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1485978_34	742733.HMPREF9469_01820	112.0	2.96e-30	N/A	N/A
structural_annotation	UHGV-1485978_34	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_35	phrog_132	65.1	9.3e-19	head-tail adaptor	connector
UniRef90	UHGV-1485978_35	UniRef90_A0A2S6HSG0	113.0	2.12e-30	Gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1485978_35	742733.HMPREF9469_01821	102.0	1.05e-26	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1485978_35	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1485978_35	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_36	phrog_2724	54.2	0.0000000000000028	N/A	unknown function
UniRef90	UHGV-1485978_36	UniRef90_A0A3D1FTV4	62.0	0.0000000000928	Transcription termination factor Rho	N/A
Pfam	UHGV-1485978_36	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-1485978_36	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_37	phrog_422	263.5	0	major head protein	head and packaging
UniRef90	UHGV-1485978_37	UniRef90_A0A2H4JCM6	415.0	0	Putative capsid protein	N/A
eggNOG-mapper	UHGV-1485978_37	742733.HMPREF9469_01823	423.0	0	N/A	N/A
structural_annotation	UHGV-1485978_37	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_38	phrog_172	151.7	4.2039e-45	head scaffolding protein	head and packaging
UniRef90	UHGV-1485978_38	UniRef90_UPI001571586D	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-1485978_38	742733.HMPREF9469_01824	161.0	0	N/A	N/A
Pfam	UHGV-1485978_38	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1485978_38	PF14265	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1485978_39	411460.RUMTOR_01296	77.8	1.5e-18	N/A	N/A
PHROG	UHGV-1485978_40	phrog_2841	315.8	0	minor head protein	head and packaging
UniRef90	UHGV-1485978_40	UniRef90_A0A1C5ZQ59	561.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-1485978_40	742733.HMPREF9469_01825	348.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-1485978_40	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1485978_40	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1485978_40	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485978_40	PF15542,PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_41	phrog_64	393.8	0	portal protein	head and packaging
UniRef90	UHGV-1485978_41	UniRef90_UPI001EE834BD	661.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1485978_41	742733.HMPREF9469_01826	620.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1485978_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1485978_41	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1485978_41	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1485978_42	K06909	150.0	1.96182e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1485978_42	phrog_10250	217.5	0	N/A	unknown function
UniRef90	UHGV-1485978_42	UniRef90_UPI001C023397	815.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1485978_42	903814.ELI_3215	643.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1485978_42	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1485978_42	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1485978_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1485978_42	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_43	phrog_1889	219.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-1485978_43	UniRef90_UPI001C027893	441.0	0	phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1485978_43	33035.JPJF01000107_gene435	233.0	0	N/A	N/A
Pfam	UHGV-1485978_43	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-1485978_43	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-1485978_43	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1485978_43	PF06056,NF040601,COG5484	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_44	phrog_11237	94.8	7.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-1485978_44	411461.DORFOR_01161	206.0	0	N/A	N/A
PHROG	UHGV-1485978_45	phrog_6568	56.1	4.8e-16	N/A	unknown function
KOfam	UHGV-1485978_46	K04763	183.6	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1485978_46	phrog_1	152.1	4.2039e-45	integrase	integration and excision
UniRef90	UHGV-1485978_46	UniRef90_UPI0019614967	513.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1485978_46	411461.DORFOR_01160	477.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1485978_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1485978_46	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1485978_46	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_49	phrog_24386	295.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1485978_49	478749.BRYFOR_08546	253.0	0	UMP catabolic process	N/A
COG	UHGV-1485978_49	COG0647	N/A	N/A	Ribonucleotide monophosphatase NagD, HAD superfamily	N/A
structural_annotation	UHGV-1485978_51	PF10400	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_52	phrog_625	63.2	2.8e-18	N/A	unknown function
UniRef90	UHGV-1485978_52	UniRef90_A0A7X5CBN4	148.0	5.74532e-44	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1485978_52	397290.C810_01502	122.0	1.16e-34	N/A	N/A
COG	UHGV-1485978_54	COG0732	N/A	N/A	Restriction endonuclease S subunit	N/A
structural_annotation	UHGV-1485978_54	PF01420,COG0732	N/A	N/A	N/A	N/A
KOfam	UHGV-1485978_55	K03427	198.2	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1485978_55	phrog_6380	308.7	0	DNA methyltransferase	other
UniRef90	UHGV-1485978_55	UniRef90_A0A3E5GPR3	484.0	0	Type I restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-1485978_55	592010.GCWU000182_001448	252.0	0	HsdM N-terminal domain	N/A
PADLOC	UHGV-1485978_55	MTase_I_00005	212.1	0	Type I methyltransferase	RM
Pfam	UHGV-1485978_55	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1485978_55	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1485978_55	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-1485978_56	phrog_7566	94.2	7.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-1485978_56	1280698.AUJS01000007_gene1020	185.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1485978	Yes	39,211	42	100	1
UHGV-1444575	No	28,185	43	72	1
UHGV-0077280	No	24,078	43	59	1