vOTU vOTU-076042

vOTU: vOTU-076042

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-076042
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00469 → vGENUS-00887 → vSUBGEN-39289 → vOTU-076042
Host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Parasutterella
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0110423
Biosample ID	SAMEA3708801
Genome length (bp)	40,379 bps
CheckV completeness	91.12% (High-quality)
CDS count	50
CDS density	93.13%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Parasutterella	Total connections	125	Host agreement	100
PHIST-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Parasutterella → Parasutterella excrementihominis	Total connections	11	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0110423_2	K01185	99.3	6e-29	E3.2.1.17; lysozyme [EC:3.2.1.17]	N/A
PHROG	UHGV-0110423_2	phrog_7	114.5	1.2e-33	endolysin	lysis
UniRef90	UHGV-0110423_2	UniRef90_A0A5B3FP35	298.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0110423_2	469610.HMPREF0189_02350	202.0	0	Phage lysozyme	N/A
Pfam	UHGV-0110423_2	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme
COG	UHGV-0110423_2	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
HAMAP	UHGV-0110423_2	MF_04110	N/A	N/A	Endolysin	N/A
structural_annotation	UHGV-0110423_2	PF00959,MF_04110,COG3772	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0110423_7	PF16990,MF_04072	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0110423_8	469610.HMPREF0189_02346	51.6	0.00000112	N/A	N/A
structural_annotation	UHGV-0110423_8	PF17065	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0110423_9	PF00386,NF033147,COG4935	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_10	phrog_4912	248.5	0	tail fiber assembly	tail
UniRef90	UHGV-0110423_10	UniRef90_UPI001F4F2EB0	451.0	0	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0110423_10	469610.HMPREF0189_01210	151.0	9.78106e-43	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-0110423_10	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0110423_10	PF16778	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_11	phrog_5073	58.6	4.7e-17	tail fiber protein	tail
eggNOG-mapper	UHGV-0110423_11	563192.HMPREF0179_03429	57.0	0.00000157	domain, Protein	N/A
Pfam	UHGV-0110423_11	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0110423_11	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0110423_12	phrog_17587	40.6	0.000000000023	tail fiber protein	tail
Pfam	UHGV-0110423_12	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0110423_12	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_13	phrog_684	581.2	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0110423_13	1157708.KB907450_gene5438	371.0	0	N/A	N/A
PHROG	UHGV-0110423_14	phrog_5143	131.2	5.60519e-45	N/A	unknown function
eggNOG-mapper	UHGV-0110423_14	1415780.JPOG01000001_gene1744	109.0	5.44e-21	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	N/A
Pfam	UHGV-0110423_14	PF18763	N/A	N/A	ddrB-like ParB superfamily domain	ddrB-ParB
COG	UHGV-0110423_14	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
PHROG	UHGV-0110423_15	phrog_873	90.7	4.2e-27	endolysin	head and packaging
eggNOG-mapper	UHGV-0110423_15	526118.B4YQH3_9CAUD	84.0	0.000000000000223	lytic transglycosylase activity	N/A
structural_annotation	UHGV-0110423_15	MF_04122	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_16	phrog_418	48.3	0.00000000000016	internal virion protein	head and packaging
UniRef90	UHGV-0110423_16	UniRef90_A0A6F8VD79	83.6	4.6e-16	N/A	N/A
eggNOG-mapper	UHGV-0110423_16	557598.LHK_01551	75.5	0.0000000000000963	N/A	N/A
structural_annotation	UHGV-0110423_16	PF07321,COG5034	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_17	phrog_376	437.5	0	tail protein	tail
UniRef90	UHGV-0110423_17	UniRef90_A0A6F8VDG3	604.0	0	N/A	N/A
eggNOG-mapper	UHGV-0110423_17	557598.LHK_01546	716.0	0	N/A	N/A
structural_annotation	UHGV-0110423_17	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_18	phrog_394	122.2	3.4e-36	tail protein	tail
eggNOG-mapper	UHGV-0110423_18	557598.LHK_01545	125.0	3.21e-33	N/A	N/A
structural_annotation	UHGV-0110423_18	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_19	phrog_427	89.0	4.8e-26	N/A	unknown function
UniRef90	UHGV-0110423_19	UniRef90_Q775C8	66.6	0.0000000000227	Bbp16	N/A
eggNOG-mapper	UHGV-0110423_19	194699.Q775C8_BPBPP	66.6	0.00000000000381	N/A	N/A
Pfam	UHGV-0110423_19	PF21190	N/A	N/A	Bbp16	Bbp16
structural_annotation	UHGV-0110423_19	PF21190,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_20	phrog_212	47.7	1.6e-22	major head protein	head and packaging
UniRef90	UHGV-0110423_20	UniRef90_Q775C7	144.0	5.51e-37	Bbp17	N/A
eggNOG-mapper	UHGV-0110423_20	194699.Q775C7_BPBPP	144.0	9.25e-38	viral capsid	N/A
Pfam	UHGV-0110423_20	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0110423_20	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_21	phrog_458	149.6	2.52234e-44	protease	other
UniRef90	UHGV-0110423_21	UniRef90_UPI0013EFD20D	117.0	9.28e-29	protease	N/A
eggNOG-mapper	UHGV-0110423_21	557598.LHK_01541	104.0	8.5e-25	N/A	N/A
PHROG	UHGV-0110423_22	phrog_528	50.4	0.000000000000027	N/A	unknown function
PHROG	UHGV-0110423_23	phrog_332	474.0	0	head-tail adaptor	connector
UniRef90	UHGV-0110423_23	UniRef90_UPI0012BC467D	889.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0110423_23	557598.LHK_01539	438.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0110423_23	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0110423_23	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
Pfam	UHGV-0110423_24	PF05680	N/A	N/A	ATP synthase E chain	ATP-synt_E
UniRef90	UHGV-0110423_25	UniRef90_UPI0012BC2332	288.0	0	GNAT family N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0110423_25	1072685.IX83_07115	89.4	1.14e-20	Acetyltransferase (GNAT) family	N/A
Pfam	UHGV-0110423_25	PF00583	N/A	N/A	Acetyltransferase (GNAT) family	Acetyltransf_1
COG	UHGV-0110423_25	COG3375	N/A	N/A	Predicted acetyltransferase, GNAT superfamily	N/A
KOfam	UHGV-0110423_26	K06909	50.1	0.000000000000037	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0110423_26	phrog_5902	248.8	0	N/A	unknown function
UniRef90	UHGV-0110423_26	UniRef90_UPI0012BCF9F6	1033.0	0	terminase	N/A
eggNOG-mapper	UHGV-0110423_26	665942.HMPREF1022_00139	441.0	0	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	N/A
COG	UHGV-0110423_26	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0110423_26	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0110423_27	K07474	105.9	8.4e-31	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0110423_27	phrog_51	105.9	4.1e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0110423_27	UniRef90_UPI0012BCC981	281.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0110423_27	1028806.GGE_2186	91.7	2.67e-21	terminase, small subunit	N/A
Pfam	UHGV-0110423_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0110423_27	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0110423_27	PF03592,COG3728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0110423_28	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_29	phrog_244	74.1	2.7e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0110423_29	713587.THITH_01560	79.0	2.71e-17	N/A	N/A
structural_annotation	UHGV-0110423_29	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0110423_30	762966.HMPREF9439_01020	140.0	5.01945e-42	N/A	N/A
KOfam	UHGV-0110423_31	K02315	185.7	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0110423_31	phrog_50	187.0	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110423_31	UniRef90_A0A5B3FNB0	501.0	0	DNA replication protein DnaC	N/A
eggNOG-mapper	UHGV-0110423_31	762966.HMPREF9439_01018	315.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0110423_31	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0110423_31	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0110423_31	PF01695,MF_01919,NF005931,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_32	phrog_1032	71.7	1.3e-20	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110423_32	UniRef90_A0A5B3FNM4	442.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0110423_32	762966.HMPREF9439_01017	120.0	8.24e-29	N/A	N/A
Pfam	UHGV-0110423_32	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0110423_32	PF07106,MF_01177,TIGR01610,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0110423_33	K01356	52.3	0.000000000000015	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0110423_33	phrog_4	82.0	1.1e-23	transcriptional repressor	transcription regulation
UniRef90	UHGV-0110423_33	UniRef90_UPI001563F13C	347.0	0	S24 family peptidase	N/A
eggNOG-mapper	UHGV-0110423_33	469610.HMPREF0189_01170	293.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0110423_33	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0110423_33	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0110423_33	PF00717,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_34	phrog_5018	48.0	0.00000000000017	N/A	unknown function
UniRef90	UHGV-0110423_34	UniRef90_UPI0012BB7DC3	583.0	0	group I intron-associated PD-(D/E)XK endonuclease	N/A
Pfam	UHGV-0110423_34	PF11645	N/A	N/A	PD-(D/E)XK endonuclease	PDDEXK_5
PHROG	UHGV-0110423_35	phrog_11186	46.2	0.00000000000046	N/A	unknown function
eggNOG-mapper	UHGV-0110423_35	469610.HMPREF0189_01091	144.0	4.74e-39	N/A	N/A
PHROG	UHGV-0110423_36	phrog_21150	73.0	2.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0110423_36	469610.HMPREF0189_01090	155.0	2.20004e-43	N/A	N/A
UniRef90	UHGV-0110423_37	UniRef90_A0A3D3SJ30	142.0	5.55054e-42	Transcriptional regulator	N/A
PHROG	UHGV-0110423_41	phrog_1366	273.3	0	N/A	unknown function
UniRef90	UHGV-0110423_41	UniRef90_K1JY20	259.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0110423_41	742823.HMPREF9465_00902	259.0	0	AAA domain	N/A
Pfam	UHGV-0110423_41	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0110423_41	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0110423_41	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0110423_42	K03111	155.1	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0110423_42	phrog_44	130.8	1.1e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110423_42	UniRef90_F3QNN6	151.0	4.76441e-44	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0110423_42	469610.HMPREF0189_01394	151.0	8.40779e-45	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0110423_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0110423_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0110423_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0110423_42	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0110423_42	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_43	phrog_253	102.1	5.7e-30	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110423_43	UniRef90_A7B3R2	60.8	0.000000011	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0110423_43	742823.HMPREF9465_00905	85.5	7.68e-19	Siphovirus Gp157	N/A
Pfam	UHGV-0110423_43	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0110423_43	PF05565,NF002139	N/A	N/A	N/A	N/A
UniRef90	UHGV-0110423_45	UniRef90_A0A5B3FNV2	108.0	6.81e-30	KTSC domain-containing protein	N/A
structural_annotation	UHGV-0110423_45	PF13619	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_47	phrog_2245	56.0	8.1e-16	nucleoside triphosphate pyrophosphohydrolase	other
KOfam	UHGV-0110423_48	K07733	55.9	0.0000000000000011	alpA; prophage regulatory protein	N/A
UniRef90	UHGV-0110423_48	UniRef90_D9Y6B9	147.0	4.2039e-45	Transcriptional regulator, AlpA family	N/A
eggNOG-mapper	UHGV-0110423_48	743974.MBO_05697	49.3	0.000000653	Transcriptional regulator	N/A
Pfam	UHGV-0110423_48	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
COG	UHGV-0110423_48	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0110423_48	PF05930,NF033499,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0110423_49	phrog_1	75.4	9.1e-22	integrase	integration and excision
UniRef90	UHGV-0110423_49	UniRef90_D9Y6B8	899.0	0	Arm-DNA-bind_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0110423_49	469610.HMPREF0189_01073	899.0	0	DNA integration	N/A
Pfam	UHGV-0110423_49	PF13356	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_3
COG	UHGV-0110423_49	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0110423_49	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0110423_50	UniRef90_F3QKR6	217.0	0	Transcriptional regulator, MerR family	N/A
eggNOG-mapper	UHGV-0110423_50	469610.HMPREF0189_01072	217.0	0	PFAM regulatory protein, MerR	N/A
Pfam	UHGV-0110423_50	PF13411	N/A	N/A	MerR HTH family regulatory protein	MerR_1
COG	UHGV-0110423_50	COG0789	N/A	N/A	DNA-binding transcriptional regulator, MerR family	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0110423	Yes	40,379	49	91	1