vOTU vOTU-076048

vOTU: vOTU-076048

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-076048
Number of genomes	8
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00061 → vGENUS-00150 → vSUBGEN-00290 → vOTU-076048
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella atypica
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1342359
Biosample ID	SAMN00715253
Genome length (bp)	42,348 bps
CheckV completeness	99.90% (High-quality)
CDS count	56
CDS density	94.94%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella atypica	Total connections	55	Host agreement	74.55
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1342359_1	K14059	216.3	0	int; integrase	N/A
PHROG	UHGV-1342359_1	phrog_1	196.4	0	integrase	integration and excision
UniRef90	UHGV-1342359_1	UniRef90_UPI001D0692F2	679.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1342359_1	1232428.CAVO010000003_gene1025	266.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1342359_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1342359_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1342359_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1342359_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1342359_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_2	phrog_20936	111.4	3.7e-33	N/A	unknown function
UniRef90	UHGV-1342359_2	UniRef90_UPI001D086FA7	173.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1342359_2	706434.HMPREF9429_00182	60.1	0.0000000000825	N/A	N/A
Pfam	UHGV-1342359_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1342359_2	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_4	phrog_2967	62.3	7.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1342359_4	UniRef90_UPI001D073245	210.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1342359_4	861450.HMPREF0080_02022	142.0	7.7702e-42	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1342359_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1342359_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1342359_4	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_7	phrog_7735	77.9	1.1e-22	excisionase	integration and excision
UniRef90	UHGV-1342359_7	UniRef90_UPI001D08B64F	176.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1342359_7	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1342359_7	PF12728,MF_01155,NF033787,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_8	phrog_674	67.6	3.8e-20	N/A	unknown function
UniRef90	UHGV-1342359_8	UniRef90_UPI000E71DE97	524.0	0	N/A	N/A
eggNOG-mapper	UHGV-1342359_8	318464.IO99_00465	82.8	0.00000000000000245	N/A	N/A
Pfam	UHGV-1342359_8	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1342359_8	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_9	phrog_2324	164.2	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342359_9	UniRef90_UPI001402D75D	316.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1342359_9	1209989.TepiRe1_1126	140.0	2.99e-39	ERF superfamily	N/A
Pfam	UHGV-1342359_9	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1342359_9	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_10	phrog_72	63.1	4.4e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342359_10	UniRef90_R5BGH3	127.0	7.66e-34	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1342359_10	1507.HMPREF0262_00432	95.9	2.09e-22	N/A	N/A
KOfam	UHGV-1342359_11	K07451	49.2	0.00000000000011	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1342359_11	phrog_7785	43.5	0.0000000000054	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342359_11	UniRef90_UPI001D0937EE	192.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1342359_11	429009.Adeg_0841	51.2	0.00000295	PFAM HNH endonuclease	N/A
Pfam	UHGV-1342359_11	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1342359_11	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1342359_11	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_13	phrog_5968	198.4	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342359_13	UniRef90_UPI0019608C6C	420.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1342359_13	565664.EFXG_01794	202.0	0	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-1342359_13	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1342359_13	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1342359_13	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1342359_13	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_14	phrog_9804	78.7	7.8e-23	N/A	unknown function
UniRef90	UHGV-1342359_14	UniRef90_A0A2N5P3I4	56.2	0.00000324	Inhibitor_G39P domain-containing protein	N/A
structural_annotation	UHGV-1342359_14	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1342359_16	K03111	143.1	3.00018e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1342359_16	phrog_44	125.7	3.8e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342359_16	UniRef90_UPI000750C286	222.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1342359_16	936589.HMPREF1521_1228	194.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1342359_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1342359_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1342359_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1342359_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1342359_16	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1342359_17	PF11305,MF_01360	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_18	phrog_954	228.5	0	DNA methyltransferase	other
UniRef90	UHGV-1342359_18	UniRef90_A0A239ZA70	296.0	0	Methyltransferase domain	N/A
eggNOG-mapper	UHGV-1342359_18	1401067.HMPREF0872_03435	261.0	0	methyltransferase	N/A
PADLOC	UHGV-1342359_18	MTase_II_00074	214.8	0	Type II methyltransferase	RM
Pfam	UHGV-1342359_18	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1342359_18	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-1342359_18	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_19	phrog_11227	177.1	0	protease	other
UniRef90	UHGV-1342359_19	UniRef90_A0A8J6Z9T4	149.0	7.00649e-44	Membrane protease subunit	N/A
eggNOG-mapper	UHGV-1342359_19	716544.wcw_0668	121.0	1.5e-33	N/A	N/A
PHROG	UHGV-1342359_20	phrog_2776	41.9	0.000000000011	N/A	unknown function
UniRef90	UHGV-1342359_20	UniRef90_A0A2S7ZCT0	168.0	0	DNA repair protein MmcB-related protein	N/A
structural_annotation	UHGV-1342359_20	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
KOfam	UHGV-1342359_21	K00571	122.1	6.3e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1342359_21	phrog_67	100.9	8.5e-31	DNA methyltransferase	other
UniRef90	UHGV-1342359_21	UniRef90_UPI00196047F8	503.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1342359_21	749222.Nitsa_1817	382.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1342359_21	MTase_II_00157	107.1	4.6e-32	Type II methyltransferase	RM
Pfam	UHGV-1342359_21	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1342359_21	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1342359_21	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_22	phrog_244	79.3	5.9e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342359_22	UniRef90_A0A841R0Q1	155.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1342359_22	1123250.KB908417_gene653	140.0	1.38e-41	N/A	N/A
structural_annotation	UHGV-1342359_22	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1342359_23	PF13384,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-1342359_24	K01520	153.5	1.4013e-45	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1342359_24	phrog_135	149.5	1.26117e-44	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1342359_24	UniRef90_UPI001D0616FF	248.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1342359_24	36080.S2JYN8	124.0	1.62e-34	dUTPase	N/A
Pfam	UHGV-1342359_24	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1342359_24	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1342359_24	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1342359_24	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-1342359_25	K19232	129.6	5.19994e-41	btaE; hyaluronate-binding autotransporter adhesin	N/A
UniRef90	UHGV-1342359_25	UniRef90_UPI001D068F5F	419.0	0	YadA-like family protein	N/A
eggNOG-mapper	UHGV-1342359_25	1128111.HMPREF0870_01786	176.0	0	Hep Hag repeat protein	N/A
Pfam	UHGV-1342359_25	PF05658	N/A	N/A	YadA head domain repeat (2 copies)	YadA_head
Pfam	UHGV-1342359_25	PF05662	N/A	N/A	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
Pfam	UHGV-1342359_25	PF03895	N/A	N/A	YadA-like membrane anchor domain	YadA_anchor
COG	UHGV-1342359_25	COG5295	N/A	N/A	Autotransporter adhesin	N/A
structural_annotation	UHGV-1342359_25	PF03895,NF033478,COG5295	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_28	phrog_21026	113.6	1.4e-33	N/A	unknown function
PHROG	UHGV-1342359_30	phrog_36	49.3	0.000000000000093	transcriptional regulator	transcription regulation
UniRef90	UHGV-1342359_30	UniRef90_A0A3Q8S392	55.1	0.00000114	N/A	N/A
eggNOG-mapper	UHGV-1342359_30	706434.HMPREF9429_00383	58.2	0.0000000136	N/A	N/A
structural_annotation	UHGV-1342359_30	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-1342359_34	K07474	132.8	4.5e-39	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1342359_34	phrog_51	142.2	2.10055e-42	terminase small subunit	head and packaging
UniRef90	UHGV-1342359_34	UniRef90_A0A239Z9J1	241.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1342359_34	1235800.C819_00494	122.0	1.42e-33	Terminase small subunit	N/A
Pfam	UHGV-1342359_34	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1342359_34	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1342359_34	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_35	phrog_5902	249.8	0	N/A	unknown function
UniRef90	UHGV-1342359_35	UniRef90_UPI0018A6EFE4	586.0	0	terminase	N/A
eggNOG-mapper	UHGV-1342359_35	1200557.JHWV01000001_gene277	592.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-1342359_35	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1342359_35	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_38	phrog_332	382.2	0	head-tail adaptor	connector
UniRef90	UHGV-1342359_38	UniRef90_UPI001D07F371	884.0	0	portal protein	N/A
eggNOG-mapper	UHGV-1342359_38	1401067.HMPREF0872_06810	497.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1342359_38	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1342359_38	PF12236,MF_04120,TIGR01538	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_39	phrog_528	67.6	1.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1342359_39	568816.Acin_1833	63.2	0.0000000000168	N/A	N/A
PHROG	UHGV-1342359_40	phrog_458	88.1	1.3e-25	protease	other
eggNOG-mapper	UHGV-1342359_40	1401067.HMPREF0872_06800	117.0	2.34e-30	N/A	N/A
PHROG	UHGV-1342359_41	phrog_212	166.2	0	major head protein	head and packaging
UniRef90	UHGV-1342359_41	UniRef90_A0A239Z8I8	604.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-1342359_41	1401067.HMPREF0872_06795	368.0	0	N/A	N/A
Pfam	UHGV-1342359_41	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1342359_41	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_42	phrog_427	42.6	0.0000000000097	N/A	unknown function
structural_annotation	UHGV-1342359_42	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_44	phrog_394	168.7	0	tail protein	tail
eggNOG-mapper	UHGV-1342359_44	1401067.HMPREF0872_06780	216.0	0	N/A	N/A
structural_annotation	UHGV-1342359_44	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_45	phrog_376	642.8	0	tail protein	tail
UniRef90	UHGV-1342359_45	UniRef90_A0A3A4JUE0	328.0	0	E1_FCCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1342359_45	1401067.HMPREF0872_06775	642.0	0	N/A	N/A
structural_annotation	UHGV-1342359_45	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_46	phrog_308	74.5	1.5e-21	internal virion protein	head and packaging
UniRef90	UHGV-1342359_46	UniRef90_UPI001D08FF44	337.0	0	N/A	N/A
Pfam	UHGV-1342359_46	PF11090	N/A	N/A	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
structural_annotation	UHGV-1342359_46	PF11039,MF_02210,NF000165,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_47	phrog_418	72.5	5.1e-21	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1342359_47	1401067.HMPREF0872_06765	169.0	0	N/A	N/A
structural_annotation	UHGV-1342359_47	PF05384,TIGR01010,COG3524	N/A	N/A	N/A	N/A
COG	UHGV-1342359_48	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1342359_48	PF01464,COG0741	N/A	N/A	N/A	N/A
KOfam	UHGV-1342359_49	K20478	104.1	8.7e-32	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1342359_49	phrog_9880	263.6	0	N/A	unknown function
UniRef90	UHGV-1342359_49	UniRef90_D1YMD8	3036.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1342359_49	699218.HMPREF0889_0277	472.0	0	N/A	N/A
Pfam	UHGV-1342359_49	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
KOfam	UHGV-1342359_50	K13925	42.9	0.0000000000047	pfbA; plasmin and fibronectin-binding protein A	N/A
UniRef90	UHGV-1342359_50	UniRef90_A0A2S7ZGN5	1204.0	0	Pectate_lyase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1342359_50	1150626.PHAMO_180136	61.6	0.000000794	N/A	N/A
Pfam	UHGV-1342359_50	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
structural_annotation	UHGV-1342359_50	PF05096,PF03906,MF_03008,TIGR03866,COG3204	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_52	phrog_23091	219.8	0	N/A	unknown function
structural_annotation	UHGV-1342359_52	PF05105,NF035928	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_54	phrog_34863	56.4	2.4e-16	N/A	unknown function
UniRef90	UHGV-1342359_54	UniRef90_UPI001D017339	154.0	3.0268e-43	chitosanase	N/A
eggNOG-mapper	UHGV-1342359_54	546273.VEIDISOL_01083	232.0	0	LysM domain	N/A
Pfam	UHGV-1342359_54	PF21277	N/A	N/A	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
COG	UHGV-1342359_54	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1342359_54	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-1342359_55	phrog_10797	215.9	0	N/A	unknown function
UniRef90	UHGV-1342359_55	UniRef90_A0A1B1I041	131.0	7.93e-35	Glycoprotease	N/A
eggNOG-mapper	UHGV-1342359_55	883156.HMPREF9282_01266	153.0	1.26117e-44	N/A	N/A
structural_annotation	UHGV-1342359_55	PF06531	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1342359	Yes	42,348	37	100	1
UHGV-0128806	No	24,036	38	58	1
UHGV-1465676	No	24,036	38	58	1
UHGV-0186528	No	19,690	37	48	1
UHGV-1797077	No	19,690	37	48	1
UHGV-0128808	No	18,247	36	44	1
UHGV-1777959	No	18,247	36	44	1
UHGV-1669690	No	10,142	35	25	1