vOTU vOTU-076469

vOTU: vOTU-076469

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-076469
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01637 → vGENUS-09164 → vSUBGEN-10343 → vOTU-076469
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium paraputrificum
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0360097
Biosample ID	SAMN04436830
Genome length (bp)	36,131 bps
CheckV completeness	92.74% (High-quality)
CDS count	55
CDS density	90.69%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium paraputrificum	Total connections	7	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium paraputrificum	Total connections	26	Host agreement	96.15

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0360097_2	K11062	86.9	1.8e-25	entD; probable enterotoxin D	N/A
PHROG	UHGV-0360097_2	phrog_3088	155.6	0	amidase	lysis
UniRef90	UHGV-0360097_2	UniRef90_UPI00189821B7	627.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0360097_2	1280689.AUJC01000003_gene983	624.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0360097_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0360097_2	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0360097_2	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0360097_2	PF01510,PF01471,MF_04111,NF008758,TIGR02869,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_3	phrog_199	107.3	1.5e-31	holin	lysis
UniRef90	UHGV-0360097_3	UniRef90_A0A1C6KXX7	219.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0360097_3	1280689.AUJC01000003_gene982	261.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0360097_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0360097_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0360097_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0360097_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0360097_4	NF040910.1	N/A	N/A	CD1375 family protein	N/A
eggNOG-mapper	UHGV-0360097_6	1280689.AUJC01000003_gene979	1477.0	0	N/A	N/A
PHROG	UHGV-0360097_7	phrog_6616	79.3	3.6e-23	tail protein	tail
eggNOG-mapper	UHGV-0360097_7	1280689.AUJC01000003_gene978	1608.0	0	Phage minor structural protein	N/A
COG	UHGV-0360097_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0360097_7	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_8	phrog_1194	126.7	9.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0360097_8	1280689.AUJC01000003_gene977	226.0	0	N/A	N/A
Pfam	UHGV-0360097_8	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0360097_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_9	phrog_1535	125.9	2.7e-37	tail length tape measure protein	tail
UniRef90	UHGV-0360097_9	UniRef90_A0A139QA40	96.7	1.01e-21	Phage tail length tape-measure protein	N/A
eggNOG-mapper	UHGV-0360097_9	1280689.AUJC01000003_gene976	206.0	0	phage tail tape measure protein	N/A
COG	UHGV-0360097_9	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0360097_10	phrog_559	144.6	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0360097_10	UniRef90_UPI0013776F4D	182.0	0	N/A	N/A
eggNOG-mapper	UHGV-0360097_10	298338.Q5ULK0_9CAUD	94.4	7.05e-19	regulation of transcription, DNA-dependent	N/A
structural_annotation	UHGV-0360097_10	PF18741,PF14311,MF_04160,NF007294,COG3727	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_11	phrog_31409	387.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0360097_11	UniRef90_A0A7Z7G584	289.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0360097_11	1280689.AUJC01000003_gene976	918.0	0	phage tail tape measure protein	N/A
COG	UHGV-0360097_11	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0360097_12	phrog_2066	49.6	0.000000000000045	N/A	unknown function
eggNOG-mapper	UHGV-0360097_12	1280689.AUJC01000003_gene975	208.0	0	N/A	N/A
PHROG	UHGV-0360097_13	phrog_183	80.4	2.5e-23	tail chaperone protein	tail
UniRef90	UHGV-0360097_13	UniRef90_UPI0006C0E497	222.0	0	N/A	N/A
eggNOG-mapper	UHGV-0360097_13	1280689.AUJC01000003_gene974	238.0	0	N/A	N/A
Pfam	UHGV-0360097_13	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0360097_13	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_14	phrog_2546	79.9	3.7e-23	N/A	unknown function
UniRef90	UHGV-0360097_14	UniRef90_A0A0N0P137	88.2	3.37e-19	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0360097_14	1280689.AUJC01000003_gene973	139.0	2.08e-39	N/A	N/A
PHROG	UHGV-0360097_15	phrog_158	82.0	1.1e-23	major tail protein	tail
UniRef90	UHGV-0360097_15	UniRef90_A0A1B8RSU9	283.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0360097_15	1280689.AUJC01000003_gene972	278.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0360097_15	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0360097_15	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_16	phrog_78	61.5	1.6e-17	tail terminator	connector
eggNOG-mapper	UHGV-0360097_16	1280689.AUJC01000003_gene971	236.0	0	N/A	N/A
structural_annotation	UHGV-0360097_16	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_17	phrog_5	105.8	4.3e-31	tail completion or Neck1 protein	connector
UniRef90	UHGV-0360097_17	UniRef90_UPI001B3C7E28	288.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0360097_17	1280689.AUJC01000003_gene970	279.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0360097_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0360097_17	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0360097_17	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_18	phrog_2168	131.0	3.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-0360097_18	1280689.AUJC01000003_gene969	203.0	0	N/A	N/A
structural_annotation	UHGV-0360097_18	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_19	phrog_132	87.9	7.5e-26	head-tail adaptor	connector
UniRef90	UHGV-0360097_19	UniRef90_UPI000829FFA7	180.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0360097_19	1280689.AUJC01000003_gene968	199.0	0	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0360097_19	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0360097_19	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_20	phrog_422	273.2	0	major head protein	head and packaging
UniRef90	UHGV-0360097_20	UniRef90_UPI00189C3164	575.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0360097_20	1280689.AUJC01000003_gene967	372.0	0	N/A	N/A
structural_annotation	UHGV-0360097_20	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_21	phrog_172	168.5	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0360097_21	UniRef90_UPI00189D679E	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-0360097_21	1280689.AUJC01000003_gene966	193.0	0	N/A	N/A
Pfam	UHGV-0360097_21	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0360097_21	PF14265	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0360097_22	931276.Cspa_c26890	77.4	2.59e-17	N/A	N/A
PHROG	UHGV-0360097_23	phrog_115	362.3	0	minor head protein	head and packaging
UniRef90	UHGV-0360097_23	UniRef90_A0A1B8RSU6	988.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0360097_23	1280689.AUJC01000003_gene964	868.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0360097_23	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0360097_23	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0360097_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0360097_23	PF15542,PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_24	phrog_64	402.7	0	portal protein	head and packaging
UniRef90	UHGV-0360097_24	UniRef90_UPI000EA0DF01	835.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0360097_24	1280689.AUJC01000003_gene963	852.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0360097_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0360097_24	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0360097_24	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0360097_25	K06909	361.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0360097_25	phrog_3717	164.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0360097_25	UniRef90_A0A1B8RSV7	856.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0360097_25	1280689.AUJC01000003_gene962	864.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0360097_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0360097_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0360097_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0360097_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0360097_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0360097_26	K07474	123.7	2.8e-36	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0360097_26	phrog_51	134.5	5.19999e-40	terminase small subunit	head and packaging
UniRef90	UHGV-0360097_26	UniRef90_UPI0006C08353	244.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0360097_26	1280689.AUJC01000003_gene961	248.0	0	Terminase small subunit	N/A
Pfam	UHGV-0360097_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0360097_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0360097_26	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0360097_27	1280689.AUJC01000003_gene960	51.2	0.000000218	N/A	N/A
structural_annotation	UHGV-0360097_27	PF10922,MF_00839	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0360097_29	1196322.A370_02168	76.6	5.07e-17	N/A	N/A
eggNOG-mapper	UHGV-0360097_30	158190.SpiGrapes_2843	114.0	4.72e-29	N/A	N/A
PHROG	UHGV-0360097_31	phrog_36	76.0	4.8e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0360097_31	UniRef90_UPI0018A8ECDF	201.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0360097_31	1391647.AVSV01000022_gene2550	147.0	1.38028e-42	N/A	N/A
NCBIFam	UHGV-0360097_31	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0360097_31	PF08281,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0360097_33	UniRef90_UPI00195E311F	67.4	0.000000000000846	ATPase	N/A
eggNOG-mapper	UHGV-0360097_33	1294142.CINTURNW_1277	73.2	3.24e-16	N/A	N/A
structural_annotation	UHGV-0360097_34	NF009256	N/A	N/A	N/A	N/A
KOfam	UHGV-0360097_36	K03111	123.8	2.2e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0360097_36	phrog_44	129.3	2.9e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0360097_36	UniRef90_UPI001B3C54BA	260.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0360097_36	1391647.AVSV01000014_gene451	157.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0360097_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0360097_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0360097_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0360097_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0360097_36	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_37	phrog_154	47.0	0.00000000000039	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0360097_37	1196322.A370_02042	59.3	0.000000000423	N/A	N/A
structural_annotation	UHGV-0360097_37	PF17399	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_38	phrog_244	75.8	7.7e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0360097_38	1280692.AUJL01000044_gene2344	186.0	0	N/A	N/A
structural_annotation	UHGV-0360097_38	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_39	phrog_25509	110.2	8.9e-33	N/A	unknown function
eggNOG-mapper	UHGV-0360097_39	1280689.AUJC01000003_gene942	196.0	0	N/A	N/A
PHROG	UHGV-0360097_42	phrog_3497	57.5	8.2e-18	N/A	unknown function
UniRef90	UHGV-0360097_42	UniRef90_UPI001367DC20	162.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0360097_42	1280689.AUJC01000003_gene939	153.0	0	N/A	N/A
structural_annotation	UHGV-0360097_42	COG5126	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_43	phrog_2514	102.3	4.5e-30	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0360097_43	UniRef90_A0A1F1L7W3	263.0	0	DnaA_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0360097_43	195103.CPF_0940	156.0	2.24208e-44	Transcriptional regulator	N/A
COG	UHGV-0360097_43	COG2188	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-0360097_43	PF09681,PF17214,MF_01819,TIGR01714,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_45	phrog_155	152.5	2.8026e-45	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0360097_45	UniRef90_UPI000C07C001	377.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0360097_45	386415.NT01CX_2192	210.0	0	ERF superfamily	N/A
Pfam	UHGV-0360097_45	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0360097_45	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_46	phrog_253	159.0	0	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0360097_46	UniRef90_UPI001B3C84DE	296.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0360097_46	1499683.CCFF01000014_gene3558	198.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0360097_46	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0360097_46	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_48	phrog_4292	45.0	0.0000000000014	N/A	unknown function
KOfam	UHGV-0360097_52	K07741	100.3	4.3e-29	antB; anti-repressor protein	N/A
PHROG	UHGV-0360097_52	phrog_130	237.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0360097_52	UniRef90_UPI0018A9A0C6	344.0	0	phage antirepressor	N/A
eggNOG-mapper	UHGV-0360097_52	536233.CLO_0955	279.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0360097_52	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0360097_52	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0360097_52	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0360097_52	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0360097_53	UniRef90_UPI000C088317	143.0	2.01787e-43	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0360097_53	1280692.AUJL01000009_gene2973	115.0	4.57e-33	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0360097_53	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0360097_53	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0360097_54	phrog_18000	93.8	9.2e-28	N/A	unknown function
UniRef90	UHGV-0360097_54	UniRef90_A0A6N3BIG7	228.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0360097_54	545697.HMPREF0216_02800	227.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0360097_54	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0360097_54	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0360097_54	PF02498,PF10552,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0360097_55	UniRef90_UPI0006C35A6C	137.0	6.89004e-41	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0360097_55	469618.FVAG_01279	58.5	0.000000000138	N/A	N/A
Pfam	UHGV-0360097_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0360097_55	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0360097	Yes	36,131	31	93	1
UHGV-0176965	No	19,779	31	50	1
UHGV-1763595	No	17,204	31	44	1