vOTU vOTU-076585

vOTU: vOTU-076585

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-076585
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00556 → vGENUS-00560 → vSUBGEN-08934 → vOTU-076585
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1488469
Biosample ID	N/A
Genome length (bp)	44,550 bps
CheckV completeness	99.90% (High-quality)
CDS count	58
CDS density	93.49%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315	Total connections	105	Host agreement	80.95
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	9	Host agreement	88.89

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1488469_1	UniRef90_A0A8D9PDT6	82.8	5.67e-19	Transcriptional regulatory protein	N/A
structural_annotation	UHGV-1488469_2	PF20477,NF033819	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_3	phrog_22984	41.0	0.000000000033	N/A	unknown function
structural_annotation	UHGV-1488469_5	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1488469_6	UniRef90_A0A843GWV6	91.7	5.25e-22	Rubrerythrin domain-containing protein	N/A
structural_annotation	UHGV-1488469_6	PF02255,NF007156,COG1447	N/A	N/A	N/A	N/A
KOfam	UHGV-1488469_7	K14059	95.8	6.8e-28	int; integrase	N/A
PHROG	UHGV-1488469_7	phrog_1	121.4	7.4e-36	integrase	integration and excision
UniRef90	UHGV-1488469_7	UniRef90_UPI00195CC1EE	441.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1488469_7	411471.SUBVAR_05816	119.0	7.92e-28	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1488469_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1488469_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1488469_7	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1488469_8	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1488469_9	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-1488469_9	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
KOfam	UHGV-1488469_12	K18830	50.2	0.000000000000034	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1488469_12	phrog_2967	40.8	0.000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-1488469_12	UniRef90_UPI001873D032	95.9	5.75e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1488469_12	1095750.HMPREF9970_1686	78.6	5.55e-17	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1488469_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1488469_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1488469_12	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1488469_14	COG2005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1488469_16	1235835.C814_03153	66.2	0.000000000000148	N/A	N/A
structural_annotation	UHGV-1488469_16	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_20	phrog_2113	46.2	0.00000000000035	N/A	unknown function
UniRef90	UHGV-1488469_20	UniRef90_A0A8D9UH91	108.0	1.33e-26	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1488469_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1488469_20	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_23	phrog_7838	122.9	3.2e-36	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488469_23	UniRef90_A0A8D9UGW3	187.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1488469_23	742767.HMPREF9456_02052	161.0	0	N/A	N/A
structural_annotation	UHGV-1488469_23	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-1488469_24	K03111	136.6	2.8e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1488469_24	phrog_44	137.2	9.70007e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488469_24	UniRef90_A0A316NQ75	185.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1488469_24	1007096.BAGW01000023_gene151	171.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1488469_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1488469_24	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1488469_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1488469_24	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1488469_24	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1488469_25	K02315	127.9	9.1e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1488469_25	phrog_50	118.9	5e-35	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488469_25	UniRef90_A0A3D0LZW1	192.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-1488469_25	445972.ANACOL_01829	184.0	0	N/A	N/A
Pfam	UHGV-1488469_25	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1488469_25	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1488469_25	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_26	phrog_72	47.6	0.00000000000013	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488469_26	UniRef90_A0A2Z4Q9W9	113.0	1.31e-28	NinB	N/A
eggNOG-mapper	UHGV-1488469_26	1507.HMPREF0262_00432	89.7	3.02e-20	N/A	N/A
structural_annotation	UHGV-1488469_26	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-1488469_27	K14440	57.9	6.2e-25	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1488469_27	phrog_62	174.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488469_27	UniRef90_UPI00189BC49F	580.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1488469_27	394503.Ccel_3060	500.0	0	SNF2 family N-terminal domain	N/A
Pfam	UHGV-1488469_27	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1488469_27	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1488469_27	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1488469_27	PF18766,PF16203,MF_01821,TIGR04095,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-1488469_28	K24451	124.1	1e-36	zim; modification methylase	N/A
PHROG	UHGV-1488469_28	phrog_67	100.0	1.5e-29	DNA methyltransferase	other
UniRef90	UHGV-1488469_28	UniRef90_A0A7G9WJV4	488.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1488469_28	1280692.AUJL01000044_gene2345	441.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1488469_28	MTase_II_00139	91.0	2.6e-26	Type II methyltransferase	RM
Pfam	UHGV-1488469_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1488469_28	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1488469_28	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_29	phrog_7566	74.0	1.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-1488469_29	693746.OBV_25470	69.7	0.0000000000000538	N/A	N/A
PHROG	UHGV-1488469_30	phrog_15773	50.9	0.000000000000017	N/A	unknown function
dbAPIS	UHGV-1488469_30	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
KOfam	UHGV-1488469_31	K00390	103.1	3e-30	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1488469_31	phrog_424	124.6	6.3e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1488469_31	UniRef90_UPI00164AFBC1	357.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1488469_31	1408437.JNJN01000032_gene2312	338.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-1488469_31	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1488469_31	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1488469_31	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_33	phrog_22543	40.7	0.000000000043	N/A	unknown function
PHROG	UHGV-1488469_35	phrog_954	197.2	0	DNA methyltransferase	other
UniRef90	UHGV-1488469_35	UniRef90_A0A810Q0N4	290.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1488469_35	1280698.AUJS01000007_gene1028	269.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-1488469_35	MTase_II_00074	195.3	0	Type II methyltransferase	RM
Pfam	UHGV-1488469_35	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1488469_35	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-1488469_35	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
UniRef90	UHGV-1488469_39	UniRef90_A0A3C0NNN3	78.2	0.00000000000000331	HTH psq-type domain-containing protein	N/A
KOfam	UHGV-1488469_40	K06909	103.7	2.1e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1488469_40	phrog_979	218.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1488469_40	UniRef90_A0A2V2CDD6	797.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1488469_40	411483.FAEPRAA2165_01044	558.0	0	Terminase-like family	N/A
Pfam	UHGV-1488469_40	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1488469_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1488469_40	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1488469_41	PF05534,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_44	phrog_156	288.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1488469_44	1410650.JHWL01000003_gene2833	518.0	0	N/A	N/A
structural_annotation	UHGV-1488469_44	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1488469_45	K07584	48.2	0.0000000000002	N/A	N/A
PHROG	UHGV-1488469_45	phrog_4478	52.0	0.0000000000000094	peptidase	other
UniRef90	UHGV-1488469_45	UniRef90_A0A7C6WRZ1	58.9	0.00000000222	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1488469_45	718252.FP2_29210	50.8	0.00000357	Cysteine protease Prp	N/A
Pfam	UHGV-1488469_45	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1488469_45	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1488469_45	PF04327,NF011132,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_46	phrog_372	121.1	8.3e-36	tail protein	tail
UniRef90	UHGV-1488469_46	UniRef90_UPI001373A0FD	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-1488469_46	1042156.CXIVA_07170	96.7	3.9e-18	tail collar domain protein	N/A
Pfam	UHGV-1488469_46	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1488469_46	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1488469_46	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1488469_47	1410650.JHWL01000003_gene2815	67.8	0.00000000135	N/A	N/A
PHROG	UHGV-1488469_48	phrog_22978	719.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1488469_48	1321782.HMPREF1986_00356	196.0	0	N/A	N/A
Pfam	UHGV-1488469_48	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
Pfam	UHGV-1488469_48	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-1488469_49	phrog_13908	116.8	1.3e-34	N/A	unknown function
PHROG	UHGV-1488469_50	phrog_1357	200.1	0	major head protein	head and packaging
UniRef90	UHGV-1488469_50	UniRef90_A0A3C0NPN1	583.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1488469_50	1410650.JHWL01000003_gene2830	261.0	0	N/A	N/A
NCBIFam	UHGV-1488469_50	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1488469_50	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_51	phrog_15239	51.1	0.000000000000016	N/A	unknown function
PHROG	UHGV-1488469_52	phrog_12105	111.9	3.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-1488469_52	1519439.JPJG01000060_gene1891	78.2	6.11e-17	N/A	N/A
PHROG	UHGV-1488469_53	phrog_511	230.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1488469_53	1410650.JHWL01000003_gene2827	312.0	0	N/A	N/A
structural_annotation	UHGV-1488469_53	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_55	phrog_59	142.7	1.10002e-42	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1488469_55	UniRef90_UPI0018E45219	174.0	0	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1488469_55	51369.Q8LTA0_9CAUD	159.0	0	HNH endonuclease	N/A
PADLOC	UHGV-1488469_55	HEase_00016	97.8	1.3e-28	homing endonuclease	RM
Pfam	UHGV-1488469_55	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1488469_55	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1488469_55	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_56	phrog_1493	56.3	7e-16	endolysin	lysis
UniRef90	UHGV-1488469_56	UniRef90_A0A1C6GMR6	199.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-1488469_56	394503.Ccel_3272	115.0	1.6e-28	NLP P60 protein	N/A
Pfam	UHGV-1488469_56	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1488469_56	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1488469_56	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1488469_57	phrog_937	63.1	4.6e-18	hemolysin	other
eggNOG-mapper	UHGV-1488469_57	1519439.JPJG01000023_gene533	89.0	8.22e-22	N/A	N/A
PHROG	UHGV-1488469_58	phrog_1129	68.6	6.3e-20	holin	lysis
UniRef90	UHGV-1488469_58	UniRef90_A0A2V2CUX8	128.0	5.88e-37	Enolase	N/A
eggNOG-mapper	UHGV-1488469_58	1226322.HMPREF1545_00069	119.0	5.05e-34	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1488469_58	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1488469_58	PF06946	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1488469	Yes	44,550	57	100	1
UHGV-0095300	No	44,550	57	100	1
UHGV-0066520	No	32,727	58	76	1
UHGV-1399041	No	32,727	58	76	1