vOTU vOTU-076667

vOTU: vOTU-076667

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-076667
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00261 → vGENUS-00170 → vSUBGEN-32682 → vOTU-076667
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0131663
Biosample ID	N/A
Genome length (bp)	35,765 bps
CheckV completeness	99.90% (High-quality)
CDS count	49
CDS density	88.76%
tRNA count	5
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	339	Host agreement	94.69
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	141	Host agreement	92.91

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0131663_1	K06400	276.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0131663_1	phrog_95	285.3	0	integrase	integration and excision
UniRef90	UHGV-0131663_1	UniRef90_A0A417HSQ2	375.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0131663_1	1356854.N007_18555	191.0	0	Recombinase	N/A
Pfam	UHGV-0131663_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0131663_1	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0131663_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0131663_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0131663_4	UniRef90_A0A4R1QMH6	87.0	3.93e-21	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0131663_4	445972.ANACOL_00210	101.0	1.03e-27	N/A	N/A
Pfam	UHGV-0131663_4	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
structural_annotation	UHGV-0131663_4	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_5	phrog_1129	63.2	3.2e-18	holin	lysis
UniRef90	UHGV-0131663_5	UniRef90_A0A8J6J3M3	102.0	7.38e-27	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0131663_5	742740.HMPREF9474_03522	100.0	7.36e-27	N/A	N/A
Pfam	UHGV-0131663_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0131663_5	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_6	phrog_4105	75.8	4.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0131663_6	397288.C806_00115	64.3	0.00000000000687	N/A	N/A
KOfam	UHGV-0131663_7	K01447	70.6	3e-20	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0131663_7	phrog_1794	146.1	3.19496e-43	amidase	lysis
UniRef90	UHGV-0131663_7	UniRef90_R5AZE6	308.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0131663_7	397288.C806_00777	212.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0131663_7	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0131663_7	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0131663_7	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0131663_8	PF00629,NF033675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0131663_9	411473.RUMCAL_00420	65.5	0.0000000505	nuclear chromosome segregation	N/A
COG	UHGV-0131663_9	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0131663_10	phrog_6616	63.9	3.3e-19	tail protein	tail
structural_annotation	UHGV-0131663_11	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_12	phrog_1535	120.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0131663_12	UniRef90_A0A810PX76	110.0	1.63e-21	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0131663_12	1449050.JNLE01000003_gene3881	146.0	1.24e-33	domain protein	N/A
COG	UHGV-0131663_12	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0131663_12	PF16789,TIGR02473	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_13	phrog_706	109.5	3e-32	N/A	unknown function
UniRef90	UHGV-0131663_13	UniRef90_UPI00164D7633	176.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0131663_13	693746.OBV_18170	169.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0131663_13	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0131663_13	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_14	phrog_11299	98.3	7.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0131663_14	1449050.JNLE01000003_gene3883	67.4	0.00000000000375	N/A	N/A
structural_annotation	UHGV-0131663_14	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_15	phrog_3099	87.5	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0131663_15	693746.OBV_18150	223.0	0	N/A	N/A
structural_annotation	UHGV-0131663_15	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_16	phrog_3266	65.2	9e-19	tail completion	connector
eggNOG-mapper	UHGV-0131663_16	476272.RUMHYD_01781	123.0	1.19e-33	N/A	N/A
structural_annotation	UHGV-0131663_16	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_17	phrog_556	60.7	5e-18	minor head protein	head and packaging
UniRef90	UHGV-0131663_17	UniRef90_A0A1H7MNM8	123.0	4.37e-33	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0131663_17	476272.RUMHYD_01780	107.0	8.89e-28	N/A	N/A
Pfam	UHGV-0131663_17	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0131663_17	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_18	phrog_3366	47.1	0.00000000000043	N/A	unknown function
structural_annotation	UHGV-0131663_18	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_19	phrog_541	68.6	8.4e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0131663_19	33035.JPJF01000106_gene3131	73.6	0.000000000000021	N/A	N/A
PHROG	UHGV-0131663_20	phrog_267	51.9	0.000000000000011	major head protein	head and packaging
eggNOG-mapper	UHGV-0131663_20	1235799.C818_04223	157.0	1.1911e-43	N/A	N/A
structural_annotation	UHGV-0131663_20	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_21	phrog_194	44.5	0.0000000000028	head scaffolding protein	head and packaging
UniRef90	UHGV-0131663_21	UniRef90_UPI001C0EBA51	127.0	2.4e-33	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0131663_21	1125725.HMPREF1325_1331	62.0	0.00000000228	Phage minor structural protein GP20	N/A
Pfam	UHGV-0131663_21	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0131663_21	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_22	phrog_581	252.9	0	minor head protein	head and packaging
UniRef90	UHGV-0131663_22	UniRef90_A0A3D4T830	334.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0131663_22	476272.RUMHYD_01761	218.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0131663_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0131663_22	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-0131663_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0131663_22	PF06152,PF18812	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_23	phrog_533	213.1	0	portal protein	head and packaging
UniRef90	UHGV-0131663_23	UniRef90_A0A173TY48	345.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0131663_23	33035.JPJF01000106_gene3135	325.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0131663_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_24	phrog_1233	95.2	7.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0131663_24	1415774.U728_832	93.2	3.72e-23	N/A	N/A
structural_annotation	UHGV-0131663_24	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-0131663_25	K06909	396.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0131663_25	phrog_5653	148.3	4.34403e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0131663_25	UniRef90_A0A416S378	637.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0131663_25	33035.JPJF01000106_gene3136	598.0	0	Terminase small subunit	N/A
Pfam	UHGV-0131663_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0131663_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0131663_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0131663_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0131663_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0131663_25	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0131663_26	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_27	phrog_36	62.8	7.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0131663_27	UniRef90_A0A7D6VSS6	60.1	0.0000000116	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0131663_27	428125.CLOLEP_01806	103.0	3.61e-26	N/A	N/A
Pfam	UHGV-0131663_27	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0131663_27	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_29	phrog_5781	69.1	5.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0131663_29	293826.Amet_2596	53.1	0.00000245	N/A	N/A
Pfam	UHGV-0131663_29	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0131663_29	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_30	phrog_1029	223.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0131663_30	1203606.HMPREF1526_01890	370.0	0	N/A	N/A
structural_annotation	UHGV-0131663_30	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_31	phrog_997	118.3	4.8e-35	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0131663_31	UniRef90_R6MCS9	108.0	4.42e-28	N/A	N/A
eggNOG-mapper	UHGV-0131663_31	1519439.JPJG01000059_gene1910	175.0	0	N/A	N/A
KOfam	UHGV-0131663_32	K00558	222.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0131663_32	phrog_116	259.5	0	DNA methyltransferase	other
UniRef90	UHGV-0131663_32	UniRef90_A0A350THX9	739.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0131663_32	1121334.KB911073_gene1852	615.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0131663_32	MTase_II_00020	96.6	2.9e-31	Type II methyltransferase	RM
Pfam	UHGV-0131663_32	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0131663_32	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0131663_32	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0131663_33	1232449.BAHV02000016_gene1829	132.0	5.6e-38	N/A	N/A
KOfam	UHGV-0131663_34	K03700	87.9	1.4e-25	recU; recombination protein U	N/A
PHROG	UHGV-0131663_34	phrog_843	137.0	6.50006e-41	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0131663_34	UniRef90_A0A1H0W5Y9	163.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0131663_34	537013.CLOSTMETH_01720	150.0	4.47014e-43	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0131663_34	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0131663_34	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0131663_34	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_35	phrog_3584	133.7	1.4e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0131663_35	411470.RUMGNA_02047	137.0	2.91e-36	N/A	N/A
structural_annotation	UHGV-0131663_35	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0131663_38	K06284	121.6	4.4e-36	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0131663_38	phrog_4681	105.1	2.5e-31	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0131663_38	UniRef90_A0A841SSA0	111.0	2.3e-30	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0131663_38	1120998.AUFC01000033_gene2303	107.0	1.18e-29	TIGRFAM looped-hinge helix DNA binding domain, AbrB family	N/A
Pfam	UHGV-0131663_38	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0131663_38	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0131663_38	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0131663_38	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
KOfam	UHGV-0131663_41	K07729	40.8	0.000000000046	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0131663_41	UniRef90_UPI0013ECC13D	63.5	0.00000000000758	helix-turn-helix domain-containing protein	N/A
PADLOC	UHGV-0131663_41	retron_type_VI_hth_cluster2_1	41.1	0.000000000053	N/A	Retron
Pfam	UHGV-0131663_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0131663_41	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0131663_41	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0131663_42	K22300	60.7	3.3e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0131663_42	phrog_8	50.8	0.000000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-0131663_42	UniRef90_UPI000E31F980	90.5	4.68e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0131663_42	1125712.HMPREF1316_2394	63.5	0.000000000145	Peptidase S24-like	N/A
PADLOC	UHGV-0131663_42	retron_type_VI_hth_cluster2_1	40.2	0.00000000007	N/A	Retron
Pfam	UHGV-0131663_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0131663_42	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0131663_42	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_43	phrog_1914	102.6	1.7e-30	N/A	unknown function
UniRef90	UHGV-0131663_43	UniRef90_R6DVV5	241.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0131663_43	1160721.RBI_I01604	150.0	1.27518e-43	N/A	N/A
Pfam	UHGV-0131663_43	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0131663_43	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0131663_43	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_44	phrog_4611	56.7	2.7e-16	minor head protein	head and packaging
UniRef90	UHGV-0131663_44	UniRef90_UPI001EDE047F	152.0	1.47e-39	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0131663_44	679192.HMPREF9013_1325	80.5	0.00000000000000613	N/A	N/A
Pfam	UHGV-0131663_44	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0131663_45	PF21227	N/A	N/A	N/A	N/A
PHROG	UHGV-0131663_46	phrog_33519	141.6	3.69943e-42	N/A	unknown function
eggNOG-mapper	UHGV-0131663_46	97139.C824_02721	102.0	1.24e-25	N/A	N/A
structural_annotation	UHGV-0131663_46	PF13958,NF010262,COG2337	N/A	N/A	N/A	N/A
KOfam	UHGV-0131663_47	K14059	212.8	0	int; integrase	N/A
PHROG	UHGV-0131663_47	phrog_1	192.1	0	integrase	integration and excision
UniRef90	UHGV-0131663_47	UniRef90_UPI001958A27A	202.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0131663_47	1203606.HMPREF1526_00215	163.0	5.46506e-44	Phage integrase family	N/A
Pfam	UHGV-0131663_47	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0131663_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0131663_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0131663_47	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0131663_49	UniRef90_A0A7U6KC97	93.2	2.75e-19	PdaC domain-containing protein	N/A
eggNOG-mapper	UHGV-0131663_49	411467.BACCAP_00419	99.0	5.62e-22	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0131663	Yes	35,765	55	100	1
UHGV-2064370	No	11,015	56	32	1