vOTU vOTU-076668

vOTU: vOTU-076668

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-076668
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-03095 → vGENUS-04240 → vSUBGEN-40128 → vOTU-076668
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0144080
Biosample ID	SAMN05214685
Genome length (bp)	42,589 bps
CheckV completeness	99.16% (High-quality)
CDS count	61
CDS density	92.04%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	248	Host agreement	98.79
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-510 → CAG-510 sp000434615	Total connections	9	Host agreement	88.89

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0144080_1	K14059	145.6	5.89947e-43	int; integrase	N/A
PHROG	UHGV-0144080_1	phrog_1	141.1	9.80068e-42	integrase	integration and excision
UniRef90	UHGV-0144080_1	UniRef90_A0A2K4ZEA1	428.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0144080_1	397291.C804_00897	402.0	0	Phage integrase family	N/A
Pfam	UHGV-0144080_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0144080_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0144080_1	PF00589,PF02920,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_3	phrog_2118	100.6	1.8e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0144080_3	UniRef90_A0A352SFW0	258.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0144080_3	1235799.C818_02668	173.0	0	endonuclease activity	N/A
Pfam	UHGV-0144080_3	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0144080_3	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0144080_3	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_4	phrog_20593	55.4	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0144080_7	397290.C810_01492	61.6	0.000000000259	N/A	N/A
structural_annotation	UHGV-0144080_7	PF09038	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_8	phrog_8684	93.2	5.7e-28	N/A	unknown function
UniRef90	UHGV-0144080_8	UniRef90_A0A173RA35	119.0	7.63e-32	YopX protein	N/A
eggNOG-mapper	UHGV-0144080_8	411470.RUMGNA_02199	85.5	2.96e-19	N/A	N/A
Pfam	UHGV-0144080_8	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0144080_8	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0144080_8	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0144080_9	UniRef90_A0A6L5YG37	99.8	2.52e-25	N/A	N/A
Pfam	UHGV-0144080_9	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0144080_10	K07392	85.7	4.7e-25	PRS2; AAA family ATPase	N/A
PHROG	UHGV-0144080_10	phrog_3757	188.3	0	N/A	unknown function
UniRef90	UHGV-0144080_10	UniRef90_A0A1Q6KIJ0	564.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0144080_10	1235802.C823_01035	334.0	0	ATPase family associated with various cellular activities (AAA)	N/A
PADLOC	UHGV-0144080_10	IetA_00002	152.0	8.40779e-45	NA	ietAS
Pfam	UHGV-0144080_10	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-0144080_10	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
structural_annotation	UHGV-0144080_10	PF00004,MF_00553,TIGR01242,COG1222	N/A	N/A	N/A	N/A
KOfam	UHGV-0144080_11	K00558	227.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0144080_11	phrog_116	266.2	0	DNA methyltransferase	other
UniRef90	UHGV-0144080_11	UniRef90_UPI001C035897	852.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0144080_11	1235800.C819_02255	676.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0144080_11	MTase_II_00020	110.8	1.5e-36	Type II methyltransferase	RM
Pfam	UHGV-0144080_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0144080_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0144080_11	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0144080_12	K06223	211.9	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0144080_12	phrog_56	169.1	0	DNA methyltransferase	other
UniRef90	UHGV-0144080_12	UniRef90_A0A413Z5T1	456.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0144080_12	1511.CLOST_1547	329.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0144080_12	MTase_II_00030	251.0	0	Type II methyltransferase	RM
Pfam	UHGV-0144080_12	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0144080_12	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0144080_12	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_13	phrog_424	84.0	1.7e-24	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0144080_13	UniRef90_A0A2H4JC51	570.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0144080_13	411461.DORFOR_01142	595.0	0	N/A	N/A
COG	UHGV-0144080_13	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0144080_13	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_14	phrog_270	68.3	1.5e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0144080_14	1071400.LBUCD034_0926	114.0	1.94e-27	DnaD domain protein	N/A
COG	UHGV-0144080_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0144080_14	PF01978,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_16	phrog_1682	47.3	0.0000000000003	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0144080_16	UniRef90_A0A0F0CCS0	167.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0144080_16	742733.HMPREF9469_01846	163.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0144080_16	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0144080_16	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_17	phrog_7566	45.6	0.0000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0144080_17	1304866.K413DRAFT_3017	55.8	0.0000000102	N/A	N/A
PHROG	UHGV-0144080_18	phrog_1227	253.0	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0144080_18	UniRef90_A0A316M6N2	481.0	0	N/A	N/A
eggNOG-mapper	UHGV-0144080_18	887325.HMPREF0381_0097	335.0	0	N/A	N/A
Pfam	UHGV-0144080_18	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0144080_18	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0144080_18	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_19	phrog_561	137.2	1.2e-40	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0144080_19	UniRef90_A0A6N7W7U3	268.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0144080_19	742733.HMPREF9469_01849	275.0	0	N/A	N/A
Pfam	UHGV-0144080_19	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0144080_19	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_20	phrog_1499	315.4	0	N/A	unknown function
UniRef90	UHGV-0144080_20	UniRef90_A0A316M6R3	828.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0144080_20	742733.HMPREF9469_01850	629.0	0	DNA recombination	N/A
COG	UHGV-0144080_20	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0144080_20	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
KOfam	UHGV-0144080_24	K08309	40.8	0.000000000034	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	N/A
PHROG	UHGV-0144080_24	phrog_19890	82.2	6.3e-24	N/A	unknown function
UniRef90	UHGV-0144080_24	UniRef90_A0A352SFF8	149.0	2.52234e-43	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0144080_24	1410650.JHWL01000003_gene2854	118.0	3.34e-31	lytic transglycosylase activity	N/A
Pfam	UHGV-0144080_24	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0144080_24	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0144080_24	PF01464,MF_01381,NF011856,COG0741	N/A	N/A	N/A	N/A
KOfam	UHGV-0144080_30	K18830	71.6	1.4e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0144080_30	phrog_8	49.8	0.000000000000041	transcriptional regulator	transcription regulation
UniRef90	UHGV-0144080_30	UniRef90_A0A6L8T004	154.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0144080_30	748224.HMPREF9436_01444	127.0	4.73e-36	N/A	N/A
PADLOC	UHGV-0144080_30	retron_type_VI_hth_cluster2_1	44.3	0.000000000004	N/A	Retron
Pfam	UHGV-0144080_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0144080_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0144080_30	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0144080_31	K07729	64.0	3.2e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0144080_31	phrog_1373	46.3	0.00000000000076	transcriptional regulator	transcription regulation
UniRef90	UHGV-0144080_31	UniRef90_A0A418QRF9	50.1	0.00000285	XRE family transcriptional regulator (Fragment)	N/A
eggNOG-mapper	UHGV-0144080_31	886293.Sinac_3489	55.1	0.0000000613	PBP superfamily domain	N/A
PADLOC	UHGV-0144080_31	retron_type_VI_hth_cluster2_1	41.9	0.000000000033	N/A	Retron
Pfam	UHGV-0144080_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0144080_31	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0144080_31	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_33	phrog_22978	86.8	8.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0144080_33	1408437.JNJN01000060_gene452	286.0	0	heme binding	N/A
Pfam	UHGV-0144080_33	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
COG	UHGV-0144080_33	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-0144080_35	K01447	50.5	0.000000000000041	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0144080_35	phrog_7698	182.4	0	endolysin	lysis
UniRef90	UHGV-0144080_35	UniRef90_A0A349YQH7	287.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0144080_35	1226322.HMPREF1545_04024	234.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0144080_35	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0144080_35	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0144080_35	PF01510,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_36	phrog_18218	149.3	7.00649e-45	N/A	unknown function
UniRef90	UHGV-0144080_36	UniRef90_A0A8D9PGR5	160.0	0	Holin	N/A
eggNOG-mapper	UHGV-0144080_36	411902.CLOBOL_03424	83.2	3.14e-19	N/A	N/A
structural_annotation	UHGV-0144080_36	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_37	phrog_1863	68.7	4.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0144080_37	665956.HMPREF1032_03922	92.0	2.16e-23	N/A	N/A
PHROG	UHGV-0144080_40	phrog_3287	148.2	4.34403e-44	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0144080_40	665956.HMPREF1032_03917	677.0	0	N/A	N/A
structural_annotation	UHGV-0144080_40	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0144080_41	693746.OBV_23880	91.7	4.09e-19	N/A	N/A
structural_annotation	UHGV-0144080_41	PF20387,NF038128,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_43	phrog_371	86.1	4.3e-25	major head protein	head and packaging
UniRef90	UHGV-0144080_43	UniRef90_A0A2D8BXG6	77.8	0.00000000000123	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0144080_43	1304275.C41B8_05408	62.4	0.0000000375	N/A	N/A
structural_annotation	UHGV-0144080_43	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_44	phrog_24113	88.4	5.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0144080_44	1226322.HMPREF1545_03847	68.2	0.0000000000011	N/A	N/A
structural_annotation	UHGV-0144080_44	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_45	phrog_35275	76.9	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0144080_45	1226322.HMPREF1545_03846	87.0	8.1e-17	N/A	N/A
PHROG	UHGV-0144080_47	phrog_156	235.4	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0144080_47	693746.OBV_23930	470.0	0	N/A	N/A
structural_annotation	UHGV-0144080_47	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0144080_48	K06909	46.0	0.00000000000055	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0144080_48	phrog_2	106.7	1.6e-31	terminase large subunit	head and packaging
UniRef90	UHGV-0144080_48	UniRef90_UPI001F401ABC	575.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0144080_48	316274.Haur_0564	144.0	5.31e-35	N/A	N/A
Pfam	UHGV-0144080_48	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0144080_48	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0144080_48	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_49	phrog_1233	91.7	8.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0144080_49	936375.HMPREF1152_1074	78.2	3.05e-17	N/A	N/A
structural_annotation	UHGV-0144080_49	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0144080_50	phrog_774	60.6	3.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0144080_50	397290.C810_05225	67.0	0.000000000000303	N/A	N/A
eggNOG-mapper	UHGV-0144080_53	556268.OFAG_00320	53.1	0.00000157	N/A	N/A
PHROG	UHGV-0144080_54	phrog_13890	55.3	6.9e-19	N/A	unknown function
UniRef90	UHGV-0144080_54	UniRef90_A0A1Y4IPK6	72.8	0.0000000000000419	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0144080_54	1378168.N510_00539	53.9	0.0000000362	N/A	N/A
PHROG	UHGV-0144080_61	phrog_36	53.0	0.0000000000000073	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0144080_61	PF07374,MF_00674,TIGR01636	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0144080	Yes	42,589	43	99	1
UHGV-0176149	No	25,027	43	59	1
UHGV-0197870	No	23,235	43	54	1