vOTU vOTU-076725

vOTU: vOTU-076725

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-076725
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103 → CAG-103 sp900543625
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-00658 → vGENUS-00533 → vSUBGEN-24019 → vOTU-076725
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0104616
Biosample ID	SAMEA3882546
Genome length (bp)	38,092 bps
CheckV completeness	99.90% (High-quality)
CDS count	56
CDS density	90.05%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	216	Host agreement	96.3
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103 → CAG-103 sp900543625	Total connections	10	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0104616_1	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-0104616_2	phrog_15863	169.4	0	N/A	unknown function
UniRef90	UHGV-0104616_2	UniRef90_K1RTM4	227.0	0	DnaJ domain protein	N/A
eggNOG-mapper	UHGV-0104616_2	693746.OBV_01780	177.0	0	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-0104616_2	PF00226	N/A	N/A	DnaJ domain	DnaJ
COG	UHGV-0104616_2	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
eggNOG-mapper	UHGV-0104616_3	1378168.N510_01472	62.4	0.000000000000938	N/A	N/A
structural_annotation	UHGV-0104616_4	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0104616_5	phrog_7339	132.1	3.6e-39	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104616_5	UniRef90_A0A8F2F0X6	265.0	0	Metallophosphoesterase	N/A
eggNOG-mapper	UHGV-0104616_5	443254.Marpi_0340	107.0	3.89e-25	metallophosphoesterase	N/A
Pfam	UHGV-0104616_5	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0104616_5	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0104616_5	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
KOfam	UHGV-0104616_6	K06909	132.7	3.7e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0104616_6	phrog_979	136.6	7.29936e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0104616_6	UniRef90_A0A1M5YHQ5	644.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0104616_6	693746.OBV_01690	520.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0104616_6	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0104616_6	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0104616_6	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0104616_8	phrog_156	137.8	2.09999e-41	portal protein	head and packaging
eggNOG-mapper	UHGV-0104616_8	693746.OBV_01670	559.0	0	N/A	N/A
structural_annotation	UHGV-0104616_8	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0104616_10	phrog_422	123.7	1.6e-36	major head protein	head and packaging
UniRef90	UHGV-0104616_10	UniRef90_A0A8J6JH37	358.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0104616_10	693746.OBV_01700	216.0	0	N/A	N/A
Pfam	UHGV-0104616_10	PF13287	N/A	N/A	Fn3 associated	Fn3_assoc
structural_annotation	UHGV-0104616_10	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0104616_11	1519439.JPJG01000011_gene57	88.6	2.03e-20	N/A	N/A
structural_annotation	UHGV-0104616_11	PF11650	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104616_12	UniRef90_A0A4D7ASB8	426.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104616_12	693746.OBV_01680	460.0	0	N/A	N/A
structural_annotation	UHGV-0104616_12	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0104616_13	phrog_32822	53.6	0.0000000000000013	virion structural protein	head and packaging
structural_annotation	UHGV-0104616_13	PF04582	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104616_14	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0104616_15	phrog_32509	48.9	1.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0104616_15	763034.HMPREF9446_00480	63.5	0.0000000347	N/A	N/A
Pfam	UHGV-0104616_16	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
structural_annotation	UHGV-0104616_16	PF13306	N/A	N/A	N/A	N/A
KOfam	UHGV-0104616_18	K18454	59.9	3.9e-17	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-0104616_18	phrog_18593	76.8	3.4e-22	N/A	unknown function
UniRef90	UHGV-0104616_18	UniRef90_A0A1C5VT90	161.0	0	Chitinase A1	N/A
eggNOG-mapper	UHGV-0104616_18	552398.HMPREF0866_03095	131.0	7.14e-37	N/A	N/A
Pfam	UHGV-0104616_18	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0104616_18	PF14600	N/A	N/A	N/A	N/A
KOfam	UHGV-0104616_19	K10804	50.3	0.000000000000022	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0104616_19	phrog_11541	87.6	1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0104616_19	1175629.AJTG01000006_gene514	132.0	2.33e-32	N/A	N/A
Pfam	UHGV-0104616_19	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
KOfam	UHGV-0104616_20	K01447	61.0	2.6e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0104616_20	phrog_5182	168.0	0	endolysin	lysis
UniRef90	UHGV-0104616_20	UniRef90_R5AZE6	471.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0104616_20	397288.C806_00777	197.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0104616_20	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0104616_20	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0104616_20	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0104616_20	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0104616_21	phrog_962	78.7	8.8e-23	holin	lysis
UniRef90	UHGV-0104616_21	UniRef90_A0A1C6F224	101.0	1.83e-26	Small integral membrane protein	N/A
eggNOG-mapper	UHGV-0104616_21	553973.CLOHYLEM_04415	101.0	4.6e-27	Bacteriophage holin	N/A
Pfam	UHGV-0104616_21	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0104616_21	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0104616_21	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104616_21	COG5546	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0104616_23	693746.OBV_01600	83.2	0.0000000000000147	N/A	N/A
UniRef90	UHGV-0104616_24	UniRef90_A0A2U1CD16	503.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0104616_24	1519439.JPJG01000011_gene53	248.0	0	N/A	N/A
PHROG	UHGV-0104616_25	phrog_474	104.4	1.6e-30	phosphofructokinase	other
UniRef90	UHGV-0104616_25	UniRef90_K1TIM3	224.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104616_25	1203606.HMPREF1526_00237	99.0	1.4e-24	N/A	N/A
Pfam	UHGV-0104616_25	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0104616_25	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0104616_27	K03091	55.4	0.0000000000000013	sigH; RNA polymerase sporulation-specific sigma factor	N/A
PHROG	UHGV-0104616_27	phrog_351	41.1	9.8e-17	RNA polymerase sigma factor	transcription regulation
eggNOG-mapper	UHGV-0104616_27	1382304.JNIL01000001_gene2216	55.5	0.00000154	sigma factor activity	N/A
Pfam	UHGV-0104616_27	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
NCBIFam	UHGV-0104616_27	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0104616_27	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0104616_27	PF04542,MF_00961,TIGR02835,COG1191	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104616_30	UniRef90_A0A8D9PDK2	73.2	0.0000000000000161	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0104616_33	phrog_38832	48.7	0.00000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0104616_33	665956.HMPREF1032_00143	69.3	0.00000000000157	N/A	N/A
structural_annotation	UHGV-0104616_33	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0104616_36	phrog_1770	50.1	0.000000000000055	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0104616_36	536233.CLO_1822	117.0	4.91e-31	N/A	N/A
structural_annotation	UHGV-0104616_36	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0104616_37	phrog_8489	204.3	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104616_37	UniRef90_UPI001A8FB48D	200.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-0104616_37	575609.HMPREF0629_01204	182.0	0	DnaD domain protein	N/A
COG	UHGV-0104616_37	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0104616_37	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0104616_38	K03111	79.0	1.1e-22	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0104616_38	phrog_44	69.7	7e-20	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104616_38	UniRef90_A0A1Y3SFQ6	62.0	0.00000000255	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0104616_38	1074488.AGBX01000001_gene892	58.2	0.0000000268	Single-strand binding protein family	N/A
Pfam	UHGV-0104616_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0104616_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0104616_38	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0104616_39	phrog_14970	254.7	0	N/A	unknown function
UniRef90	UHGV-0104616_39	UniRef90_A0A3P6JH63	211.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0104616_39	411468.CLOSCI_00315	217.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0104616_39	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0104616_39	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0104616_39	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0104616_44	phrog_4433	144.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0104616_44	645991.Sgly_0315	151.0	6.1503e-42	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0104616_44	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0104616_45	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0104616_52	K18830	43.0	0.0000000000095	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0104616_52	phrog_4	42.3	0.000000000017	transcriptional repressor	transcription regulation
UniRef90	UHGV-0104616_52	UniRef90_A0A810Q5N3	134.0	3.31e-38	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0104616_52	1235797.C816_03553	102.0	1.63e-25	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0104616_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0104616_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0104616_52	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0104616_53	K07729	62.8	8.4e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0104616_53	phrog_3	41.2	0.000000000067	transcriptional repressor	transcription regulation
UniRef90	UHGV-0104616_53	UniRef90_R5AVU4	65.1	0.00000000000142	CI-like repressor	N/A
eggNOG-mapper	UHGV-0104616_53	1292020.H483_0116665	60.8	0.0000000000131	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0104616_53	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0104616_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0104616_53	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0104616_56	K14059	114.2	2.3e-33	int; integrase	N/A
PHROG	UHGV-0104616_56	phrog_1	133.5	2.2e-39	integrase	integration and excision
UniRef90	UHGV-0104616_56	UniRef90_A0A2Z4QB94	292.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0104616_56	411468.CLOSCI_00325	90.5	1.57e-17	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0104616_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0104616_56	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0104616_56	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0104616	Yes	38,092	58	100	1
UHGV-1487860	No	26,543	59	72	1