vOTU vOTU-076848

vOTU: vOTU-076848

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-076848
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00673 → vSUBGEN-43245 → vOTU-076848
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0004223
Biosample ID	SAMEA4766055
Genome length (bp)	32,017 bps
CheckV completeness	91.00% (High-quality)
CDS count	53
CDS density	92.50%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	727	Host agreement	81.84
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	138	Host agreement	93.48

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0004223_3	K06400	263.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0004223_3	phrog_95	264.6	0	integrase	integration and excision
UniRef90	UHGV-0004223_3	UniRef90_UPI001E5635E3	257.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0004223_3	1408424.JHYI01000021_gene28	199.0	0	Recombinase	N/A
Pfam	UHGV-0004223_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0004223_3	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0004223_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0004223_3	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0004223_4	K07727	78.3	1.7e-22	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0004223_4	phrog_3	42.9	0.000000000019	transcriptional repressor	transcription regulation
UniRef90	UHGV-0004223_4	UniRef90_A0A413QHG2	155.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0004223_4	411471.SUBVAR_06679	112.0	2.64e-31	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0004223_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0004223_4	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0004223_4	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0004223_5	K06223	224.5	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0004223_5	phrog_56	188.5	0	DNA methyltransferase	other
UniRef90	UHGV-0004223_5	UniRef90_A0A1C6HHY1	443.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0004223_5	411902.CLOBOL_03426	268.0	0	COG COG0338 Site-specific DNA methylase	N/A
PADLOC	UHGV-0004223_5	MTase_II_00080	126.8	2.8e-37	Type II methyltransferase	RM
Pfam	UHGV-0004223_5	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
NCBIFam	UHGV-0004223_5	TIGR00571.1	N/A	N/A	Dam family site-specific DNA-(adenine-N6)-methyltransferase	N/A
COG	UHGV-0004223_5	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0004223_5	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_6	phrog_443	56.2	0.0000000000000011	holin	lysis
UniRef90	UHGV-0004223_6	UniRef90_R6MWB0	99.8	3.55e-26	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0004223_6	1235797.C816_04172	84.0	1.01e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0004223_6	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0004223_6	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_7	phrog_1863	65.7	1.1e-19	N/A	unknown function
UniRef90	UHGV-0004223_7	UniRef90_UPI001F223E8B	93.6	1.9e-23	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0004223_7	1226322.HMPREF1545_04027	74.3	1.27e-16	N/A	N/A
KOfam	UHGV-0004223_8	K07273	191.5	0	acm; lysozyme	N/A
PHROG	UHGV-0004223_8	phrog_291	179.4	0	endolysin	lysis
UniRef90	UHGV-0004223_8	UniRef90_R6NXV5	418.0	0	Glycoside Hydrolase Family 25-like lysozyme/endolysin	N/A
eggNOG-mapper	UHGV-0004223_8	1384066.JAGT01000001_gene920	167.0	1.4013e-45	hydrolase, family 25	N/A
Pfam	UHGV-0004223_8	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0004223_8	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004223_8	PF01183,TIGR04303,COG3757,COG5492	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004223_10	UniRef90_A0A1C6HHE5	117.0	2.34e-26	BppU_N domain-containing protein	N/A
structural_annotation	UHGV-0004223_10	PF10651,PF00541,NF040788	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_11	phrog_1067	117.6	1.3e-34	minor head protein	head and packaging
UniRef90	UHGV-0004223_11	UniRef90_A0A1G5CPD2	161.0	2.41023e-42	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0004223_11	1567011.A0A0A7RUI9_9VIRU	82.8	0.0000000000000257	N-acetylmuramoyl-L-alanine amidase activity	N/A
NCBIFam	UHGV-0004223_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0004223_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_12	phrog_33	61.8	1.9e-17	distal tail protein Dit	tail
UniRef90	UHGV-0004223_12	UniRef90_UPI00073F69EF	73.6	0.00000000000573	phage tail family protein	N/A
eggNOG-mapper	UHGV-0004223_12	1582149.A0A0A8WHP7_9CAUD	57.8	0.000000448	Phage tail protein	N/A
structural_annotation	UHGV-0004223_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0004223_13	K20361	49.2	0.000000000000035	USO1; intracellular protein transport protein USO1	N/A
PHROG	UHGV-0004223_13	phrog_5218	296.5	0	N/A	unknown function
UniRef90	UHGV-0004223_13	UniRef90_UPI000E474EFE	809.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0004223_13	999413.HMPREF1094_02001	278.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0004223_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0004223_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0004223_13	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004223_15	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_16	phrog_88	60.4	3.3e-17	major tail protein	tail
UniRef90	UHGV-0004223_16	UniRef90_A0A1G5CNS8	172.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0004223_16	483218.BACPEC_01314	58.9	0.000000037	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0004223_16	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0004223_16	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004223_17	UniRef90_UPI000E5564A4	171.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0004223_17	1118057.CAGX01000043_gene486	66.2	0.00000000000484	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0004223_17	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004223_18	1123315.AUIP01000001_gene1429	54.3	0.0000000652	N/A	N/A
structural_annotation	UHGV-0004223_18	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_19	phrog_19734	65.8	6.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0004223_19	86416.Clopa_0343	55.1	0.0000000375	N/A	N/A
structural_annotation	UHGV-0004223_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_20	phrog_749	51.5	0.000000000000016	N/A	unknown function
UniRef90	UHGV-0004223_20	UniRef90_A0A1G5CMX8	103.0	1.01e-26	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0004223_20	349161.Dred_2603	54.7	0.0000000255	N/A	N/A
PHROG	UHGV-0004223_21	phrog_10	113.3	2.5e-33	major head protein	head and packaging
UniRef90	UHGV-0004223_21	UniRef90_A0A412ULW9	577.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0004223_21	1211817.CCAT010000053_gene2132	327.0	0	Phage capsid family	N/A
Pfam	UHGV-0004223_21	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0004223_21	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0004223_21	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0004223_21	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0004223_22	K01358	147.8	9.94922e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0004223_22	phrog_94	215.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0004223_22	UniRef90_A0A412ULU1	384.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0004223_22	86416.Clopa_0340	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0004223_22	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0004223_22	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0004223_22	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_23	phrog_12	102.4	3.8e-30	portal protein	head and packaging
UniRef90	UHGV-0004223_23	UniRef90_A0A412ULV9	577.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0004223_23	1415774.U728_1254	269.0	0	Phage portal protein	N/A
Pfam	UHGV-0004223_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0004223_23	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0004223_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0004223_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_24	phrog_9	286.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0004223_24	UniRef90_A0A412UM03	981.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0004223_24	86416.Clopa_0337	621.0	0	Phage Terminase	N/A
Pfam	UHGV-0004223_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0004223_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0004223_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0004223_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_25	phrog_5110	82.8	3.3e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0004223_25	UniRef90_UPI00057D0A7C	113.0	1.2e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0004223_25	86416.Clopa_0336	106.0	1.56e-28	N/A	N/A
Pfam	UHGV-0004223_25	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0004223_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_26	phrog_119	72.8	5.1e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004223_26	UniRef90_A0A412ULY9	182.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0004223_26	1405.DJ92_863	87.0	6.57e-21	HNH endonuclease	N/A
Pfam	UHGV-0004223_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0004223_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0004223_27	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_29	phrog_3584	156.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0004223_29	1235800.C819_00515	88.6	3.43e-18	N/A	N/A
structural_annotation	UHGV-0004223_29	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_31	phrog_824	145.6	1.49939e-43	N/A	unknown function
UniRef90	UHGV-0004223_31	UniRef90_UPI00164A50A6	261.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0004223_31	397288.C806_00096	145.0	2.46629e-43	VRR_NUC	N/A
Pfam	UHGV-0004223_31	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0004223_31	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_32	phrog_24518	77.8	1.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0004223_32	1519439.JPJG01000077_gene922	96.7	2.23e-22	N/A	N/A
PHROG	UHGV-0004223_34	phrog_2245	67.4	2.3e-19	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0004223_34	1345695.CLSA_c30110	53.1	0.0000000487	N/A	N/A
PHROG	UHGV-0004223_35	phrog_954	221.6	0	DNA methyltransferase	other
UniRef90	UHGV-0004223_35	UniRef90_A0A2N0ULX9	351.0	0	Methyltransf_11 domain-containing protein	N/A
eggNOG-mapper	UHGV-0004223_35	457405.FSDG_01549	212.0	0	methyltransferase	N/A
PADLOC	UHGV-0004223_35	MTase_II_00074	224.5	0	Type II methyltransferase	RM
Pfam	UHGV-0004223_35	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0004223_35	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0004223_35	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004223_37	NF041288,COG4830	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_38	phrog_25754	52.3	0.0000000000000043	N/A	unknown function
eggNOG-mapper	UHGV-0004223_38	97139.C824_00736	59.7	0.000000000414	N/A	N/A
structural_annotation	UHGV-0004223_38	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_39	phrog_323	54.1	0.0000000000000019	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004223_39	UniRef90_UPI001C01CFF8	185.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0004223_39	756499.Desde_1065	220.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-0004223_39	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
UniRef90	UHGV-0004223_40	UniRef90_UPI00042422E9	112.0	2.71e-27	SANT/Myb-like DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0004223_40	394503.Ccel_3305	130.0	7.64e-34	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
PHROG	UHGV-0004223_43	phrog_36399	43.0	0.0000000000095	N/A	unknown function
structural_annotation	UHGV-0004223_48	PF13443,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004223_49	UniRef90_A0A374DVN3	151.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0004223_49	411902.CLOBOL_02554	60.1	0.0000000000454	N/A	N/A
UniRef90	UHGV-0004223_50	UniRef90_A0A373XLN2	121.0	1.01e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0004223_50	999413.HMPREF1094_00245	72.0	0.000000000000288	Peptidase S24-like	N/A
COG	UHGV-0004223_50	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0004223_50	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_51	phrog_1914	144.1	8.99634e-43	N/A	unknown function
UniRef90	UHGV-0004223_51	UniRef90_A0A374NDM7	281.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0004223_51	1160721.RBI_I01604	162.0	0	N/A	N/A
Pfam	UHGV-0004223_51	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0004223_51	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0004223_51	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_52	phrog_1847	359.0	0	N/A	unknown function
UniRef90	UHGV-0004223_52	UniRef90_U2Q2K4	533.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-0004223_52	1256908.HMPREF0373_00641	533.0	0	T5orf172	N/A
Pfam	UHGV-0004223_52	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0004223_52	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0004223_52	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-0004223_53	phrog_353	79.4	2.8e-23	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0004223_53	UniRef90_A0A7X2NEB3	120.0	2.2e-34	Addiction module toxin, HicA family	N/A
eggNOG-mapper	UHGV-0004223_53	903814.ELI_3150	112.0	5.93e-32	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0004223_53	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0004223_53	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0004223_53	PF07927,COG1724	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0004223	Yes	32,017	36	91	1
UHGV-1699719	No	10,732	38	31	1