vOTU vOTU-077336

vOTU: vOTU-077336

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-077336
Number of genomes	13
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-00650 → vSUBGEN-23284 → vOTU-077336
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1429458
Biosample ID	SAMN06165140
Genome length (bp)	30,929 bps
CheckV completeness	97.13% (High-quality)
CDS count	48
CDS density	93.74%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1222	Host agreement	72.75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	178	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1429458_1	1321372.AQQB01000002_gene484	48.9	0.000000756	N/A	N/A
KOfam	UHGV-1429458_2	K14059	101.0	2e-29	int; integrase	N/A
PHROG	UHGV-1429458_2	phrog_1	131.9	6.6e-39	integrase	integration and excision
UniRef90	UHGV-1429458_2	UniRef90_A0A374MXE7	798.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1429458_2	693746.OBV_41260	187.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1429458_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1429458_2	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1429458_2	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1429458_3	UniRef90_A0A374DTF3	122.0	8.14e-33	N/A	N/A
KOfam	UHGV-1429458_4	K22300	51.7	0.000000000000021	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1429458_4	phrog_2328	41.7	0.000000000015	transcriptional repressor	transcription regulation
UniRef90	UHGV-1429458_4	UniRef90_A0A373KVP1	107.0	1.17e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1429458_4	525254.HMPREF0072_0267	79.3	1.97e-17	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1429458_4	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1429458_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1429458_4	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_6	phrog_6058	42.6	0.0000000000073	N/A	unknown function
structural_annotation	UHGV-1429458_6	NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_8	phrog_15609	99.3	4.2e-29	N/A	unknown function
UniRef90	UHGV-1429458_8	UniRef90_A0A373SLQ6	159.0	8.89825e-43	N/A	N/A
eggNOG-mapper	UHGV-1429458_8	641112.ACOK01000073_gene2872	122.0	3.76e-30	N/A	N/A
structural_annotation	UHGV-1429458_8	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_9	phrog_253	100.6	6e-31	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429458_9	UniRef90_UPI0019171ADA	181.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1429458_9	1027396.LMOSA_21290	58.5	0.0000000309	Siphovirus Gp157	N/A
Pfam	UHGV-1429458_9	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1429458_9	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_10	phrog_2872	251.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429458_10	UniRef90_UPI001A9B3ECC	531.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1429458_10	754027.HMPREF9554_00709	224.0	0	N/A	N/A
Pfam	UHGV-1429458_10	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1429458_10	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1429458_11	K19789	321.4	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-1429458_11	phrog_16	278.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429458_11	UniRef90_A0A374N1T8	896.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1429458_11	1410670.JHXF01000015_gene2270	558.0	0	helicase	N/A
PADLOC	UHGV-1429458_11	mREase_IV_00005	116.6	9.5e-36	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1429458_11	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1429458_11	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1429458_11	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1429458_11	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_12	phrog_5702	76.2	1.5e-22	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429458_12	UniRef90_A0A374N329	209.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1429458_12	1410670.JHXF01000015_gene2271	152.0	0	VRR_NUC	N/A
Pfam	UHGV-1429458_12	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1429458_12	PF01870,MF_00130,NF002581,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_13	phrog_378	113.1	2.5e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429458_13	UniRef90_A0A374ND86	366.0	0	N/A	N/A
eggNOG-mapper	UHGV-1429458_13	1410670.JHXF01000015_gene2272	158.0	0	N/A	N/A
AcrCatalog	UHGV-1429458_13	cluster_1061	73.6	1.63e-18	NA	N/A
Pfam	UHGV-1429458_13	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1429458_13	PF05037,NF004948	N/A	N/A	N/A	N/A
KOfam	UHGV-1429458_14	K06919	103.3	2.4e-30	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1429458_14	phrog_1829	831.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429458_14	UniRef90_A0A2N0ULU7	1577.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-1429458_14	1410670.JHXF01000015_gene2274	873.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1429458_14	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1429458_14	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1429458_14	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1429458_14	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1429458_14	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1429458_14	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
UniRef90	UHGV-1429458_20	UniRef90_UPI000E4DC4DA	105.0	4.06e-26	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1429458_21	PF02796,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1429458_22	K22300	40.9	0.00000000004	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1429458_22	phrog_8	49.9	0.000000000000073	transcriptional regulator	transcription regulation
UniRef90	UHGV-1429458_22	UniRef90_A0A412ULX1	136.0	9.13002e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1429458_22	226185.EF_1277	55.1	0.00000002	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1429458_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1429458_22	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1429458_22	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_23	phrog_119	53.1	0.0000000000000047	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429458_23	UniRef90_A0A374N9T6	248.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1429458_23	1235793.C809_01915	121.0	1.31e-33	HNH endonuclease	N/A
COG	UHGV-1429458_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1429458_24	phrog_1066	116.0	1.9e-34	N/A	unknown function
UniRef90	UHGV-1429458_24	UniRef90_A0A0D0SQQ8	86.7	1.76e-19	N/A	N/A
eggNOG-mapper	UHGV-1429458_24	1203606.HMPREF1526_00982	104.0	1.33e-27	N/A	N/A
PHROG	UHGV-1429458_25	phrog_9	395.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1429458_25	UniRef90_A0A374NB45	981.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1429458_25	1235793.C809_01917	723.0	0	Phage Terminase	N/A
Pfam	UHGV-1429458_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1429458_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1429458_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1429458_25	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_26	phrog_12	180.8	0	portal protein	head and packaging
UniRef90	UHGV-1429458_26	UniRef90_A0A374NAE1	774.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1429458_26	626523.GCWU000342_01027	406.0	0	Portal protein	N/A
Pfam	UHGV-1429458_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1429458_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1429458_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_27	phrog_21498	297.4	0	N/A	unknown function
UniRef90	UHGV-1429458_27	UniRef90_C7MM70	231.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-1429458_27	469378.Ccur_02830	231.0	0	DNA binding	N/A
COG	UHGV-1429458_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1429458_27	PF05869,TIGR01712	N/A	N/A	N/A	N/A
KOfam	UHGV-1429458_28	K01358	119.9	3.3e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1429458_28	phrog_94	189.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1429458_28	UniRef90_A0A374NBM3	398.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1429458_28	1203606.HMPREF1526_00979	184.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1429458_28	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1429458_28	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1429458_28	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_29	phrog_10	152.0	5.60519e-45	major head protein	head and packaging
UniRef90	UHGV-1429458_29	UniRef90_A0A374N9V9	731.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1429458_29	1280689.AUJC01000011_gene1521	327.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1429458_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1429458_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1429458_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1429458_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_30	phrog_5223	54.9	0.0000000000000013	neck protein	connector
eggNOG-mapper	UHGV-1429458_30	931626.Awo_c31020	48.1	0.00000641	N/A	N/A
NCBIFam	UHGV-1429458_30	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1429458_30	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_31	phrog_1951	95.6	3.1e-28	head-tail adaptor	connector
UniRef90	UHGV-1429458_31	UniRef90_A0A374MZF9	182.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1429458_31	1414720.CBYM010000040_gene1649	65.5	0.00000000000199	head-tail adaptor	N/A
COG	UHGV-1429458_31	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1429458_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1429458_32	UniRef90_UPI001A9B6FBF	165.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1429458_32	1414720.CBYM010000040_gene1650	130.0	4.46e-37	N/A	N/A
structural_annotation	UHGV-1429458_32	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1429458_33	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_34	phrog_885	137.8	6.89999e-41	major tail protein	tail
UniRef90	UHGV-1429458_34	UniRef90_Q894J4	162.0	0	Conserved protein	N/A
eggNOG-mapper	UHGV-1429458_34	1321814.HMPREF9089_00935	173.0	0	N/A	N/A
structural_annotation	UHGV-1429458_34	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_35	phrog_1021	49.0	0.0000000000000053	N/A	unknown function
eggNOG-mapper	UHGV-1429458_35	1321778.HMPREF1982_03556	53.5	0.000000188	N/A	N/A
PHROG	UHGV-1429458_37	phrog_23464	258.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1429458_37	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-1429458_37	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1429458_37	COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1429458_38	UniRef90_A0A1G5CPA2	120.0	1.43e-29	Phage-related protein	N/A
eggNOG-mapper	UHGV-1429458_38	1246.JMEA01000006_gene51	67.8	0.000000000119	phage tail	N/A
COG	UHGV-1429458_38	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1429458_38	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_39	phrog_1067	139.3	2.4e-41	minor head protein	head and packaging
UniRef90	UHGV-1429458_39	UniRef90_A0A348ZBV6	179.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1429458_39	1160721.RBI_I01574	124.0	4.05e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-1429458_39	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1429458_39	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1429458_39	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1429458_39	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1429458_40	UniRef90_A0A374N9Y2	310.0	0	N/A	N/A
Pfam	UHGV-1429458_40	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1429458_40	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-1429458_42	phrog_1863	71.5	1e-21	N/A	unknown function
UniRef90	UHGV-1429458_42	UniRef90_UPI001F223E8B	90.9	2.7e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1429458_42	1203606.HMPREF1526_02027	81.6	1.99e-19	N/A	N/A
PHROG	UHGV-1429458_43	phrog_443	65.9	1.1e-18	holin	lysis
UniRef90	UHGV-1429458_43	UniRef90_R6R2Q3	89.4	4.49e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1429458_43	1235797.C816_04172	82.4	4.29e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1429458_43	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1429458_43	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1429458_44	K01447	58.8	1.2e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1429458_44	phrog_20388	312.3	0	endolysin	lysis
UniRef90	UHGV-1429458_44	UniRef90_A0A374N1L8	548.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1429458_44	1203606.HMPREF1526_00253	316.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1429458_44	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1429458_44	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1429458_44	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1429458_44	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
UniRef90	UHGV-1429458_45	UniRef90_A0A412ULX9	109.0	3.05e-30	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1429458_45	679200.HMPREF9333_02253	57.8	0.000000000132	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1429458_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1429458_45	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1429458_45	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1429458	Yes	30,929	42	97	1
UHGV-0171153	No	30,929	42	97	1
UHGV-0168482	No	28,908	42	82	1
UHGV-1444197	No	28,357	42	80	1
UHGV-1393008	No	19,243	42	79	1
UHGV-2201337	No	20,173	42	75	1
UHGV-1414591	No	15,729	42	64	1
UHGV-1492786	No	14,967	42	61	1
UHGV-1414025	No	14,458	42	59	1
UHGV-2236333	No	14,281	42	58	1
UHGV-1820611	No	12,152	43	50	1
UHGV-1594112	No	17,094	42	47	1
UHGV-1593791	No	11,813	42	32	1