vOTU vOTU-077378

vOTU: vOTU-077378

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-077378
Number of genomes	14
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-01855 → vGENUS-02912 → vSUBGEN-12498 → vOTU-077378
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0093599
Biosample ID	SAMEA3449170
Genome length (bp)	46,136 bps
CheckV completeness	96.86% (High-quality)
CDS count	59
CDS density	93.08%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	47	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	570	Host agreement	80.88

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0093599_5	PF08817	N/A	N/A	WXG100 protein secretion system (Wss), protein YukD	YukD
KOfam	UHGV-0093599_7	K02477	87.7	1.3e-25	K02477; two-component system, LytTR family, response regulator	N/A
PHROG	UHGV-0093599_7	phrog_8810	53.8	0.0000000000000026	N/A	unknown function
UniRef90	UHGV-0093599_7	UniRef90_UPI001F1644BC	168.0	0	LytTR family transcriptional regulator DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0093599_7	693746.OBV_34300	124.0	6.26e-32	LytTr DNA-binding domain	N/A
Pfam	UHGV-0093599_7	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-0093599_7	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-0093599_7	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
KOfam	UHGV-0093599_8	K03466	226.9	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-0093599_8	phrog_1358	247.5	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0093599_8	UniRef90_UPI00187395CE	962.0	0	type VII secretion protein EssC	N/A
eggNOG-mapper	UHGV-0093599_8	1280696.ATVY01000004_gene459	768.0	0	FtsK/SpoIIIE family	N/A
PADLOC	UHGV-0093599_8	SspH_00004	99.8	1.2e-31	SspH	SSP
Pfam	UHGV-0093599_8	PF00498	N/A	N/A	FHA domain	FHA
Pfam	UHGV-0093599_8	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
Pfam	UHGV-0093599_8	PF01935	N/A	N/A	Helicase HerA, central domain	DUF87
NCBIFam	UHGV-0093599_8	TIGR03928.1	N/A	N/A	type VII secretion protein EssC	N/A
COG	UHGV-0093599_8	COG0433	N/A	N/A	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	N/A
KOfam	UHGV-0093599_9	K22300	59.7	7.5e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0093599_9	phrog_2439	51.2	0.000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0093599_9	UniRef90_A0A3E3E453	92.0	1.79e-20	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0093599_9	1235798.C817_02945	77.0	3.6e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0093599_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0093599_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0093599_10	UniRef90_UPI000AE5279C	81.3	1.15e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0093599_10	1232446.BAIE02000002_gene796	55.1	0.00000000419	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0093599_10	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0093599_10	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0093599_13	PF15582,MF_00791,NF041178,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_14	phrog_310	352.7	0	transposase	integration and excision
UniRef90	UHGV-0093599_14	UniRef90_A0A6N8H399	1110.0	0	MerR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0093599_14	411471.SUBVAR_07010	1013.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-0093599_14	TnsB_0_V-K	47.8	0.00000000000018	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-0093599_14	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0093599_14	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0093599_14	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0093599_15	K07132	114.4	1.1e-33	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-0093599_15	phrog_296	151.2	8.40779e-45	DNA transposition protein	integration and excision
UniRef90	UHGV-0093599_15	UniRef90_A0A6N8H4X2	542.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0093599_15	411471.SUBVAR_07009	520.0	0	AAA domain	N/A
Pfam	UHGV-0093599_15	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0093599_15	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
PHROG	UHGV-0093599_17	phrog_5671	94.4	1.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0093599_17	293826.Amet_0399	108.0	9.28e-29	N/A	N/A
PHROG	UHGV-0093599_18	phrog_491	99.1	4.6e-29	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0093599_18	UniRef90_A0A6N3F7T2	224.0	0	Bacteriophage Mu Gam like protein	N/A
eggNOG-mapper	UHGV-0093599_18	411471.SUBVAR_07006	224.0	0	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-0093599_18	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
COG	UHGV-0093599_18	COG4396	N/A	N/A	Mu-like prophage host-nuclease inhibitor protein Gam	N/A
structural_annotation	UHGV-0093599_18	PF07352,COG4396	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_20	phrog_286	72.1	1e-20	N/A	unknown function
UniRef90	UHGV-0093599_20	UniRef90_A0A6N8H086	259.0	0	Regulatory protein GemA	N/A
eggNOG-mapper	UHGV-0093599_20	411471.SUBVAR_07005	226.0	0	N/A	N/A
Pfam	UHGV-0093599_20	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0093599_20	PF06252	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_21	phrog_836	55.9	5.3e-16	late transcriptional activator	transcription regulation
UniRef90	UHGV-0093599_21	UniRef90_A0A6N8H2N1	195.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0093599_21	411471.SUBVAR_07004	137.0	8.19003e-41	Mor transcription activator	N/A
Pfam	UHGV-0093599_21	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-0093599_21	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0093599_21	PF08765,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_22	phrog_462	41.6	0.0000000000000013	lipoprotein	other
eggNOG-mapper	UHGV-0093599_22	411471.SUBVAR_07003	102.0	2.81e-26	N/A	N/A
PHROG	UHGV-0093599_23	phrog_25462	97.8	8e-29	N/A	unknown function
UniRef90	UHGV-0093599_23	UniRef90_A0A6N8H1D3	180.0	0	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-0093599_23	742733.HMPREF9469_02885	87.8	5.34e-21	N/A	N/A
structural_annotation	UHGV-0093599_23	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_24	phrog_426	95.4	7.8e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0093599_24	UniRef90_A0A6N8H2N8	366.0	0	N/A	N/A
eggNOG-mapper	UHGV-0093599_24	411471.SUBVAR_07001	322.0	0	N/A	N/A
Pfam	UHGV-0093599_24	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0093599_24	PF11985	N/A	N/A	N/A	N/A
KOfam	UHGV-0093599_25	K02601	63.3	4.2e-18	nusG; transcription termination/antitermination protein NusG	N/A
PHROG	UHGV-0093599_25	phrog_6386	96.5	2.6e-28	transcription antiterminator	transcription regulation
UniRef90	UHGV-0093599_25	UniRef90_A0A6N8H0F4	319.0	0	NGN domain-containing protein	N/A
eggNOG-mapper	UHGV-0093599_25	411471.SUBVAR_07000	208.0	0	Transcription termination factor nusG	N/A
Pfam	UHGV-0093599_25	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0093599_25	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0093599_25	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
KOfam	UHGV-0093599_27	K06909	376.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0093599_27	phrog_3717	149.5	1.82169e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0093599_27	UniRef90_A0A6N8H4Y1	811.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0093599_27	411471.SUBVAR_06998	717.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0093599_27	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0093599_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0093599_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0093599_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0093599_27	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_29	phrog_533	172.4	0	portal protein	head and packaging
UniRef90	UHGV-0093599_29	UniRef90_D1PRG7	596.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0093599_29	411471.SUBVAR_06996	596.0	0	N/A	N/A
structural_annotation	UHGV-0093599_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_30	phrog_581	189.5	0	minor head protein	head and packaging
UniRef90	UHGV-0093599_30	UniRef90_UPI00196795ED	356.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0093599_30	411471.SUBVAR_06995	545.0	0	N/A	N/A
Pfam	UHGV-0093599_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0093599_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0093599_30	PF06152,PF14220	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_33	phrog_194	82.3	8e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0093599_33	UniRef90_A0A4R1QTK7	194.0	0	Minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0093599_33	411471.SUBVAR_06994	219.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0093599_33	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0093599_33	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_34	phrog_422	213.4	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0093599_34	693746.OBV_18090	333.0	0	N/A	N/A
structural_annotation	UHGV-0093599_34	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0093599_37	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_38	phrog_556	47.3	0.00000000000039	minor head protein	head and packaging
UniRef90	UHGV-0093599_38	UniRef90_UPI001967B4B3	158.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0093599_38	999411.HMPREF1092_03318	52.4	0.00000054	Minor capsid protein	N/A
Pfam	UHGV-0093599_38	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0093599_38	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_39	phrog_3266	42.3	0.000000000011	tail completion	connector
eggNOG-mapper	UHGV-0093599_39	693746.OBV_18140	181.0	0	N/A	N/A
structural_annotation	UHGV-0093599_39	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_40	phrog_3099	152.8	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0093599_40	411471.SUBVAR_06936	257.0	0	N/A	N/A
structural_annotation	UHGV-0093599_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_41	phrog_11299	92.2	5.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-0093599_41	665956.HMPREF1032_03059	119.0	2.6e-32	N/A	N/A
structural_annotation	UHGV-0093599_41	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_42	phrog_706	102.4	4.6e-30	N/A	unknown function
UniRef90	UHGV-0093599_42	UniRef90_UPI0013141117	227.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0093599_42	665956.HMPREF1032_03058	207.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0093599_42	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0093599_42	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_43	phrog_1535	228.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0093599_43	665956.HMPREF1032_03628	190.0	0	domain protein	N/A
COG	UHGV-0093599_43	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_44	phrog_1194	68.1	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0093599_44	1120746.CCNL01000014_gene2106	161.0	0	N/A	N/A
structural_annotation	UHGV-0093599_44	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_45	phrog_13879	279.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0093599_45	1120746.CCNL01000014_gene2107	332.0	0	N/A	N/A
structural_annotation	UHGV-0093599_45	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_46	phrog_18725	42.7	0.0000000000089	N/A	unknown function
eggNOG-mapper	UHGV-0093599_46	411902.CLOBOL_00123	80.5	1.6e-17	N/A	N/A
eggNOG-mapper	UHGV-0093599_48	411462.DORLON_00771	79.0	0.000000000000284	N/A	N/A
structural_annotation	UHGV-0093599_48	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_49	phrog_17147	329.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0093599_49	657322.FPR_27150	670.0	0	N/A	N/A
KOfam	UHGV-0093599_50	K00986	62.4	6.9e-18	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0093599_50	phrog_1423	109.2	4.5e-32	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0093599_50	UniRef90_A0A348T010	705.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-0093599_50	657322.FPR_27160	382.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-0093599_50	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0093599_50	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
KOfam	UHGV-0093599_52	K21472	65.2	1.5e-18	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
PHROG	UHGV-0093599_52	phrog_14988	42.6	0.0000000000059	peptidase	other
UniRef90	UHGV-0093599_52	UniRef90_A0A2V2FF85	257.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-0093599_52	411471.SUBVAR_05145	232.0	0	heme binding	N/A
Pfam	UHGV-0093599_52	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0093599_52	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0093599_52	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0093599_53	phrog_13256	63.8	1.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0093599_53	1226322.HMPREF1545_00132	48.5	0.00000109	N/A	N/A
KOfam	UHGV-0093599_54	K06223	233.1	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0093599_54	phrog_56	196.2	0	DNA methyltransferase	other
UniRef90	UHGV-0093599_54	UniRef90_UPI001C3B62EA	372.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0093599_54	411471.SUBVAR_06973	345.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0093599_54	MTase_II_00039	137.8	1.7e-40	Type II methyltransferase	RM
Pfam	UHGV-0093599_54	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0093599_54	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0093599_54	PF02086,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0093599_57	K12132	173.1	0	prkC, stkP; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]	N/A
PHROG	UHGV-0093599_57	phrog_2361	72.7	3.2e-32	serine-threonine kinase	other
UniRef90	UHGV-0093599_57	UniRef90_UPI001F1F3448	545.0	0	tetratricopeptide repeat protein	N/A
eggNOG-mapper	UHGV-0093599_57	718252.FP2_27310	437.0	0	Protein tyrosine kinase	N/A
Pfam	UHGV-0093599_57	PF00069	N/A	N/A	Protein kinase domain	Pkinase
Pfam	UHGV-0093599_57	PF13181	N/A	N/A	Tetratricopeptide repeat	TPR_8
COG	UHGV-0093599_57	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
UniRef90	UHGV-0093599_58	UniRef90_UPI00195D6C07	142.0	1.09e-33	zinc-ribbon domain-containing protein	N/A
Pfam	UHGV-0093599_58	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
eggNOG-mapper	UHGV-0093599_59	1280682.AUKA01000019_gene1120	96.3	1.2e-23	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0093599	Yes	46,136	59	97	1
UHGV-2000635	No	31,886	56	69	1
UHGV-0086439	No	32,248	57	69	1
UHGV-0055914	No	34,249	56	68	1
UHGV-2102974	No	29,876	57	64	1
UHGV-2142338	No	32,662	57	63	1
UHGV-2134379	No	23,162	57	50	1
UHGV-0083444	No	24,232	56	45	1
UHGV-1991264	No	14,848	56	37	1
UHGV-2087404	No	11,710	56	27	1
UHGV-1975684	No	12,450	56	26	1
UHGV-1968134	No	10,995	55	25	1
UHGV-1805071	No	12,862	57	23	1
UHGV-1795158	No	12,515	57	23	1