vOTU vOTU-077513

vOTU: vOTU-077513

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-077513
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-00172 → vSUBGEN-17112 → vOTU-077513
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0010481
Biosample ID	SAMEA4969185
Genome length (bp)	36,364 bps
CheckV completeness	94.11% (High-quality)
CDS count	48
CDS density	92.77%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	1085	Host agreement	78.71
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	205	Host agreement	84.39

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 94.11)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0010481_1	K02395	45.4	0.00000000000052	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0010481_1	phrog_3513	57.1	1.9e-16	endolysin	lysis
UniRef90	UHGV-0010481_1	UniRef90_R5ZWS5	610.0	0	Peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-0010481_1	1235801.C822_00706	55.5	0.00000806	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0010481_1	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0010481_1	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0010481_1	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0010481_1	PF08230,NF004974,COG1705	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_2	phrog_199	71.0	1.4e-20	holin	lysis
UniRef90	UHGV-0010481_2	UniRef90_A0A3B8UJ75	240.0	0	Holin	N/A
eggNOG-mapper	UHGV-0010481_2	483218.BACPEC_01140	213.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0010481_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0010481_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0010481_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0010481_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_4	phrog_2566	45.8	0.00000000000092	N/A	unknown function
PHROG	UHGV-0010481_5	phrog_6616	160.6	0	tail protein	tail
UniRef90	UHGV-0010481_5	UniRef90_A0A8D9PGP3	747.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0010481_5	1499683.CCFF01000014_gene3896	265.0	0	Phage minor structural protein	N/A
COG	UHGV-0010481_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0010481_5	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_6	phrog_1401	65.5	8e-19	N/A	unknown function
UniRef90	UHGV-0010481_6	UniRef90_UPI0007099B7A	69.7	0.00000000000123	N/A	N/A
eggNOG-mapper	UHGV-0010481_6	1294142.CINTURNW_1705	60.8	0.000000000553	N/A	N/A
structural_annotation	UHGV-0010481_6	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_7	phrog_1194	82.4	4.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0010481_7	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-0010481_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_8	phrog_1535	231.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0010481_8	UniRef90_A0A1C5PIN9	380.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0010481_8	33035.JPJF01000093_gene2243	333.0	0	phage tail tape measure protein	N/A
COG	UHGV-0010481_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0010481_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_9	phrog_8355	59.3	4.5e-17	N/A	unknown function
UniRef90	UHGV-0010481_9	UniRef90_UPI0006BBA9AA	67.8	0.000000000000666	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0010481_9	1151292.QEW_2424	70.9	0.00000000000000153	N/A	N/A
PHROG	UHGV-0010481_10	phrog_8300	66.3	4.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0010481_10	1151292.QEW_2425	59.3	0.000000000613	N/A	N/A
structural_annotation	UHGV-0010481_10	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_11	phrog_820	111.2	6.8e-33	major tail protein	tail
UniRef90	UHGV-0010481_11	UniRef90_T3DDR1	181.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0010481_11	1151292.QEW_2426	181.0	0	N/A	N/A
structural_annotation	UHGV-0010481_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_12	phrog_2595	89.4	3.4e-26	head-tail connector protein	connector
UniRef90	UHGV-0010481_12	UniRef90_UPI001D068DAC	143.0	1.85994e-41	minor capsid protein	N/A
eggNOG-mapper	UHGV-0010481_12	742740.HMPREF9474_03510	131.0	1.6e-37	N/A	N/A
Pfam	UHGV-0010481_12	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0010481_12	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_13	phrog_556	56.7	3.8e-16	minor head protein	head and packaging
eggNOG-mapper	UHGV-0010481_13	483218.BACPEC_01151	139.0	1.05001e-40	N/A	N/A
structural_annotation	UHGV-0010481_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_14	phrog_8710	134.5	3e-40	N/A	unknown function
eggNOG-mapper	UHGV-0010481_14	742740.HMPREF9474_03508	127.0	8.63e-37	N/A	N/A
structural_annotation	UHGV-0010481_14	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_15	phrog_541	67.3	2.3e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0010481_15	1304866.K413DRAFT_0783	145.0	1.58347e-43	N/A	N/A
PHROG	UHGV-0010481_17	phrog_422	211.1	0	major head protein	head and packaging
UniRef90	UHGV-0010481_17	UniRef90_W0U896	209.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0010481_17	1121947.AUHK01000002_gene935	217.0	0	N/A	N/A
structural_annotation	UHGV-0010481_17	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_18	phrog_2303	138.5	4.49999e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0010481_18	483218.BACPEC_01156	140.0	1.2e-38	N/A	N/A
PHROG	UHGV-0010481_19	phrog_872	168.5	0	N/A	unknown function
UniRef90	UHGV-0010481_19	UniRef90_A0A413P9Z7	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-0010481_19	573413.Spirs_2170	179.0	0	N/A	N/A
Pfam	UHGV-0010481_19	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0010481_19	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0010481_19	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_21	phrog_581	242.9	0	minor head protein	head and packaging
UniRef90	UHGV-0010481_21	UniRef90_A0A3D2TWR6	641.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0010481_21	33035.JPJF01000093_gene2255	445.0	0	N/A	N/A
Pfam	UHGV-0010481_21	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0010481_21	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0010481_21	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_22	phrog_533	281.4	0	portal protein	head and packaging
UniRef90	UHGV-0010481_22	UniRef90_A0A356C6G5	748.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0010481_22	742740.HMPREF9474_03501	579.0	0	N/A	N/A
structural_annotation	UHGV-0010481_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0010481_23	K06909	94.4	1.4e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0010481_23	phrog_2	67.5	2.8e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0010481_23	UniRef90_A0A413YU24	964.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0010481_23	1294142.CINTURNW_1023	516.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0010481_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0010481_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0010481_23	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0010481_24	K07474	152.6	4.2039e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0010481_24	phrog_51	160.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0010481_24	UniRef90_A0A413YU49	370.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0010481_24	1499683.CCFF01000014_gene3916	148.0	1.98984e-42	Terminase small subunit	N/A
Pfam	UHGV-0010481_24	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0010481_24	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0010481_24	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_25	phrog_36	62.6	6.5e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0010481_25	397290.C810_01391	105.0	8.24e-27	N/A	N/A
structural_annotation	UHGV-0010481_25	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_26	phrog_625	69.2	3.7e-20	N/A	unknown function
UniRef90	UHGV-0010481_26	UniRef90_A0A413YU40	245.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0010481_26	397290.C810_01502	126.0	6.9e-36	N/A	N/A
structural_annotation	UHGV-0010481_26	PF12961,COG2028	N/A	N/A	N/A	N/A
KOfam	UHGV-0010481_29	K00558	231.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0010481_29	phrog_116	266.7	0	DNA methyltransferase	other
UniRef90	UHGV-0010481_29	UniRef90_A0A356C6K5	817.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0010481_29	1235800.C819_02255	657.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0010481_29	MTase_II_00020	116.9	3.8e-37	Type II methyltransferase	RM
Pfam	UHGV-0010481_29	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0010481_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0010481_29	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0010481_30	K07319	90.1	1.5e-26	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0010481_30	phrog_16	225.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010481_30	UniRef90_A0A356C6C6	1490.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-0010481_30	1298920.KI911353_gene2709	1389.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0010481_30	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0010481_30	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0010481_30	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0010481_30	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_32	phrog_7566	92.7	2.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0010481_32	1235800.C819_00511	95.5	1.95e-22	N/A	N/A
structural_annotation	UHGV-0010481_33	PF02179,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-0010481_34	K03469	63.7	3.7e-18	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0010481_34	phrog_531	61.2	1.8e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010481_34	UniRef90_A0A413YU26	287.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0010481_34	411902.CLOBOL_05701	120.0	5.11e-33	RNase H	N/A
Pfam	UHGV-0010481_34	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0010481_34	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0010481_34	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_35	phrog_3584	242.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0010481_35	UniRef90_A0A4P8IFK4	347.0	0	N/A	N/A
eggNOG-mapper	UHGV-0010481_35	742741.HMPREF9475_00404	296.0	0	N/A	N/A
structural_annotation	UHGV-0010481_35	PF21578	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010481_37	UniRef90_A0A356C6A4	154.0	0	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-0010481_37	318464.IO99_13850	65.5	0.000000000000379	Helix-turn-helix domain	N/A
Pfam	UHGV-0010481_37	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0010481_37	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-0010481_37	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010481_38	NF040556	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0010481_39	NF037954	N/A	N/A	N/A	N/A
UniRef90	UHGV-0010481_42	UniRef90_UPI000E52936A	84.3	1.38e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0010481_42	887929.HMP0721_1290	76.3	3.32e-17	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0010481_42	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0010481_43	K22300	46.1	0.00000000000085	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0010481_43	phrog_3	43.8	0.0000000000095	transcriptional repressor	transcription regulation
UniRef90	UHGV-0010481_43	UniRef90_UPI00189C4EFE	89.7	1.03e-19	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0010481_43	469617.FUAG_00807	76.3	0.00000000000000754	Peptidase S24-like	N/A
Pfam	UHGV-0010481_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0010481_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0010481_43	PF01381,MF_02017,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0010481_44	phrog_87	80.6	1.6e-23	metallo-protease	other
UniRef90	UHGV-0010481_44	UniRef90_A0A373INP4	198.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0010481_44	397288.C806_00132	194.0	0	Zn peptidase	N/A
Pfam	UHGV-0010481_44	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0010481_44	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0010481_44	PF06114,COG2856	N/A	N/A	N/A	N/A
Pfam	UHGV-0010481_45	PF21646	N/A	N/A	Actin maturation protease-like, C-terminal domain	ACTMAP-like_C
structural_annotation	UHGV-0010481_45	PF21646,COG3271	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0010481_46	1378168.N510_03179	75.5	0.00000000000000125	SWIM zinc finger	N/A
Pfam	UHGV-0010481_46	PF04434	N/A	N/A	SWIM zinc finger	SWIM
eggNOG-mapper	UHGV-0010481_47	658655.HMPREF0988_00902	51.6	0.000000018	N/A	N/A
PHROG	UHGV-0010481_48	phrog_2695	385.4	0	N/A	unknown function
UniRef90	UHGV-0010481_48	UniRef90_A0A174PBX4	814.0	0	SIR2_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0010481_48	1504823.CCMM01000008_gene1082	529.0	0	NAD+ binding	N/A
PADLOC	UHGV-0010481_48	Sirtuin_Blast2	239.3	0	N/A	N/A
Pfam	UHGV-0010481_48	PF13289	N/A	N/A	SIR2-like domain	SIR2_2
COG	UHGV-0010481_48	COG0846	N/A	N/A	NAD-dependent protein deacetylase, SIR2 family	N/A
structural_annotation	UHGV-0010481_48	PF13289	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0010481	Yes	36,364	37	94	1
UHGV-1867324	No	10,986	38	29	1