vOTU vOTU-077553

vOTU: vOTU-077553

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-077553
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-00170 → vGENUS-07730 → vSUBGEN-06377 → vOTU-077553
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2030863
Biosample ID	N/A
Genome length (bp)	43,165 bps
CheckV completeness	99.90% (High-quality)
CDS count	73
CDS density	91.75%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	261	Host agreement	98.85
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	15	Host agreement	73.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2030863_6	UniRef90_A0A395WBY6	77.0	0.00000000000000159	N/A	N/A
structural_annotation	UHGV-2030863_8	PF01104,NF041014	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2030863_12	PF11061	N/A	N/A	N/A	N/A
UniRef90	UHGV-2030863_14	UniRef90_A0A413UEX6	286.0	0	N/A	N/A
Pfam	UHGV-2030863_14	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-2030863_14	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2030863_16	PF10879	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_17	phrog_2316	44.4	0.0000000000033	N/A	unknown function
UniRef90	UHGV-2030863_17	UniRef90_A0A3E4YBW5	122.0	2.46e-34	N/A	N/A
eggNOG-mapper	UHGV-2030863_17	1280676.AUJO01000024_gene3262	65.5	0.00000000000106	N/A	N/A
structural_annotation	UHGV-2030863_17	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_18	phrog_88	55.0	0.0000000000000015	major tail protein	tail
eggNOG-mapper	UHGV-2030863_18	862971.SANR_1246	52.4	0.00000118	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-2030863_18	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-2030863_21	COG4842	N/A	N/A	Secreted virulence factor YukE/EsxA, WXG100 family	N/A
eggNOG-mapper	UHGV-2030863_22	592031.GCWU000322_00057	72.0	0.00000000000281	N/A	N/A
PHROG	UHGV-2030863_27	phrog_119	58.8	9.4e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2030863_27	UniRef90_A0A395WA48	263.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2030863_27	1211814.CAPG01000074_gene3460	65.5	0.0000000000038	HNH endonuclease	N/A
Pfam	UHGV-2030863_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2030863_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2030863_28	phrog_361	74.5	1.3e-21	terminase small subunit	head and packaging
UniRef90	UHGV-2030863_28	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-2030863_28	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-2030863_28	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-2030863_28	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-2030863_28	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_29	phrog_9	312.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-2030863_29	UniRef90_A0A395WD03	1121.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2030863_29	742740.HMPREF9474_04307	546.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-2030863_29	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2030863_29	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2030863_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2030863_29	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_30	phrog_12	108.5	4.8e-32	portal protein	head and packaging
UniRef90	UHGV-2030863_30	UniRef90_A0A395W9X2	815.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2030863_30	1203606.HMPREF1526_01337	289.0	0	Portal protein	N/A
Pfam	UHGV-2030863_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2030863_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2030863_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2030863_31	K06904	86.5	4e-25	N/A	N/A
PHROG	UHGV-2030863_31	phrog_80	115.9	5.7e-34	head maturation protease	head and packaging
UniRef90	UHGV-2030863_31	UniRef90_A0A413UET6	347.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-2030863_31	411470.RUMGNA_02064	170.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-2030863_31	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-2030863_31	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-2030863_31	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-2030863_31	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_32	phrog_10	84.4	1.6e-24	major head protein	head and packaging
UniRef90	UHGV-2030863_32	UniRef90_A0A395WF70	806.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2030863_32	1536774.H70357_10630	168.0	1.26117e-44	Phage capsid family	N/A
Pfam	UHGV-2030863_32	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2030863_32	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2030863_32	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2030863_32	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_33	phrog_5223	51.2	0.000000000000017	neck protein	connector
UniRef90	UHGV-2030863_33	UniRef90_A0A374RXD1	82.0	2.19e-18	DNA-packaging protein	N/A
structural_annotation	UHGV-2030863_33	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_34	phrog_1951	71.8	6.6e-21	head-tail adaptor	connector
UniRef90	UHGV-2030863_34	UniRef90_A0A395WC07	224.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-2030863_34	1243664.CAVL020000054_gene3020	60.1	0.000000000276	head-tail adaptor	N/A
NCBIFam	UHGV-2030863_34	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-2030863_34	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-2030863_34	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2030863_35	1145276.T479_19945	49.7	0.00000354	N/A	N/A
structural_annotation	UHGV-2030863_35	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-2030863_36	UniRef90_A0A374RUJ8	140.0	2.04e-40	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2030863_36	86416.Clopa_0344	57.8	0.00000000894	N/A	N/A
structural_annotation	UHGV-2030863_36	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_37	phrog_88	139.3	2.09999e-41	major tail protein	tail
UniRef90	UHGV-2030863_37	UniRef90_A0A395WA58	401.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2030863_37	1033744.CAEL01000029_gene1276	154.0	1.26117e-44	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-2030863_37	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-2030863_37	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2030863_38	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-2030863_40	K10421	55.0	2.9e-19	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-2030863_40	phrog_13339	343.2	0	tail length tape measure protein	tail
UniRef90	UHGV-2030863_40	UniRef90_A0A395WD11	885.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2030863_40	999425.HMPREF9186_02045	246.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-2030863_40	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-2030863_40	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-2030863_40	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-2030863_43	phrog_33	51.1	0.000000000000033	distal tail protein Dit	tail
UniRef90	UHGV-2030863_43	UniRef90_A0A1C6JHE5	62.4	0.0000000561	Phage-related protein	N/A
Pfam	UHGV-2030863_43	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-2030863_43	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-2030863_43	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2030863_43	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_44	phrog_1067	48.9	2.3e-24	minor head protein	head and packaging
eggNOG-mapper	UHGV-2030863_44	1232446.BAIE02000002_gene836	58.5	0.00000393	Phage minor structural protein	N/A
Pfam	UHGV-2030863_44	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
NCBIFam	UHGV-2030863_44	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-2030863_44	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2030863_44	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2030863_45	537007.BLAHAN_05252	53.5	0.00000728	N/A	N/A
structural_annotation	UHGV-2030863_45	PF10651,COG5513	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2030863_46	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2030863_47	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2030863_48	1232452.BAIB02000007_gene1610	64.7	0.00000000372	N/A	N/A
PHROG	UHGV-2030863_49	phrog_15594	90.3	1.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-2030863_49	1118055.CAGU01000013_gene763	65.5	0.00000000000138	N/A	N/A
structural_annotation	UHGV-2030863_49	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_51	phrog_24103	88.5	7.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-2030863_51	1118055.CAGU01000013_gene761	82.4	8.07e-17	N/A	N/A
PHROG	UHGV-2030863_53	phrog_28838	43.7	1.6e-18	N/A	unknown function
structural_annotation	UHGV-2030863_53	PF20086,TIGR04362	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_54	phrog_24451	91.7	6.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-2030863_54	908340.HMPREF9406_2565	87.0	1.09e-20	N/A	N/A
PHROG	UHGV-2030863_55	phrog_581	121.9	7.5e-36	minor head protein	head and packaging
UniRef90	UHGV-2030863_55	UniRef90_UPI001D11B42B	129.0	3.56e-30	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-2030863_55	1151292.QEW_4539	128.0	2.18e-30	N/A	N/A
Pfam	UHGV-2030863_55	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2030863_55	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2030863_55	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_56	phrog_194	74.6	1.8e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-2030863_56	UniRef90_A0A174GWW4	80.9	0.00000000000000151	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2030863_56	411461.DORFOR_01166	59.3	0.0000000294	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-2030863_56	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-2030863_57	phrog_422	201.2	0	major head protein	head and packaging
UniRef90	UHGV-2030863_57	UniRef90_W0U896	275.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2030863_57	1235794.C811_01371	290.0	0	N/A	N/A
structural_annotation	UHGV-2030863_57	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_60	phrog_3366	89.5	3.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-2030863_60	632245.CLP_1651	63.5	0.0000000000687	N/A	N/A
structural_annotation	UHGV-2030863_60	PF20536,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_61	phrog_556	80.5	1.7e-23	minor head protein	head and packaging
UniRef90	UHGV-2030863_61	UniRef90_UPI00102FEF69	87.4	6.22e-20	minor capsid protein	N/A
eggNOG-mapper	UHGV-2030863_61	525255.HMPREF0077_0381	87.4	1.04e-20	Minor capsid protein	N/A
structural_annotation	UHGV-2030863_61	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_62	phrog_3266	101.0	8.5e-30	tail completion	connector
UniRef90	UHGV-2030863_62	UniRef90_UPI000542DA3F	58.9	0.0000000256	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-2030863_62	1292035.H476_1010	58.9	0.00000000438	N/A	N/A
structural_annotation	UHGV-2030863_62	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_63	phrog_3099	72.1	8.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-2030863_63	1125725.HMPREF1325_1337	82.4	8.27e-18	N/A	N/A
structural_annotation	UHGV-2030863_63	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2030863_64	PF16462	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_65	phrog_706	90.9	1.6e-26	N/A	unknown function
UniRef90	UHGV-2030863_65	UniRef90_UPI00156EC658	126.0	2.68e-33	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2030863_65	1499683.CCFF01000017_gene2567	65.5	0.000000000132	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2030863_65	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2030863_65	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_66	phrog_5218	213.0	0	N/A	unknown function
UniRef90	UHGV-2030863_66	UniRef90_A0A2N3LJP5	161.0	1.1e-39	PhageMin_Tail domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-2030863_66	908340.HMPREF9406_2570	278.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-2030863_66	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-2030863_66	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-2030863_67	phrog_1535	60.3	1.8e-17	tail length tape measure protein	tail
COG	UHGV-2030863_67	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-2030863_68	phrog_36410	55.9	6.2e-16	N/A	unknown function
UniRef90	UHGV-2030863_68	UniRef90_A0A1C5VV34	149.0	3.00999e-41	Phage-related protein	N/A
eggNOG-mapper	UHGV-2030863_68	1321782.HMPREF1986_02277	87.0	6.07e-18	PFAM Phage tail protein	N/A
COG	UHGV-2030863_68	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2030863_68	PF05709,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_69	phrog_538	143.5	1.49939e-42	minor tail protein	tail
UniRef90	UHGV-2030863_69	UniRef90_A0A8J6IQQ3	209.0	0	Siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-2030863_69	1321782.HMPREF1986_02278	144.0	3.23e-37	N/A	N/A
Pfam	UHGV-2030863_69	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-2030863_69	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2030863_70	phrog_199	70.3	2.1e-20	holin	lysis
UniRef90	UHGV-2030863_70	UniRef90_B0N8I2	200.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-2030863_70	445974.CLORAM_02916	200.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-2030863_70	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2030863_70	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-2030863_70	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
Pfam	UHGV-2030863_71	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-2030863_71	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2030863	Yes	43,165	33	100	1
UHGV-1441403	No	29,220	33	65	1
UHGV-2023420	No	25,311	34	56	1
UHGV-1760655	No	13,694	35	36	1
UHGV-0186195	No	13,674	35	36	1