vOTU vOTU-077575

vOTU: vOTU-077575

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-077575
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-00172 → vSUBGEN-04716 → vOTU-077575
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0080392
Biosample ID	N/A
Genome length (bp)	36,066 bps
CheckV completeness	95.23% (High-quality)
CDS count	50
CDS density	93.82%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	1305	Host agreement	98.01
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	43	Host agreement	97.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0080392_2	K07273	119.0	5.9e-35	acm; lysozyme	N/A
PHROG	UHGV-0080392_2	phrog_291	88.8	8.6e-26	endolysin	lysis
UniRef90	UHGV-0080392_2	UniRef90_A0A356C4L5	691.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0080392_2	515620.EUBELI_01316	169.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0080392_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0080392_2	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0080392_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0080392_2	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_3	phrog_199	57.1	2.4e-16	holin	lysis
UniRef90	UHGV-0080392_3	UniRef90_A0A174PAV2	224.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0080392_3	411470.RUMGNA_02086	178.0	0	N/A	N/A
Pfam	UHGV-0080392_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0080392_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0080392_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0080392_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_5	phrog_1330	72.3	3.6e-29	tail protein	tail
eggNOG-mapper	UHGV-0080392_5	1437603.BMON_1128	128.0	2.2e-29	N/A	N/A
PHROG	UHGV-0080392_6	phrog_38044	83.5	0	N/A	unknown function
UniRef90	UHGV-0080392_6	UniRef90_A0A2V1JQ53	466.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0080392_6	1410624.JNKK01000045_gene547	150.0	2.49e-39	N/A	N/A
structural_annotation	UHGV-0080392_6	PF14874,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_7	phrog_6616	147.4	9.24857e-44	tail protein	tail
eggNOG-mapper	UHGV-0080392_7	552396.HMPREF0863_01647	155.0	2.07e-36	Phage minor structural protein	N/A
COG	UHGV-0080392_7	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0080392_8	phrog_1401	63.0	5e-18	N/A	unknown function
UniRef90	UHGV-0080392_8	UniRef90_UPI000A16CD19	58.5	0.0000000234	N/A	N/A
eggNOG-mapper	UHGV-0080392_8	1232453.BAIF02000058_gene1640	63.5	0.000000000033	N/A	N/A
structural_annotation	UHGV-0080392_8	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_9	phrog_1194	83.0	3.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0080392_9	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-0080392_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_10	phrog_1535	284.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0080392_10	UniRef90_R6TDK7	344.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0080392_10	33035.JPJF01000093_gene2243	338.0	0	phage tail tape measure protein	N/A
COG	UHGV-0080392_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0080392_10	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_11	phrog_8355	116.0	8.2e-35	N/A	unknown function
UniRef90	UHGV-0080392_11	UniRef90_UPI0006BBA9AA	176.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0080392_11	394503.Ccel_3036	119.0	6.11e-33	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0080392_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0080392_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_12	phrog_8300	64.9	1.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0080392_12	1151292.QEW_2425	59.7	0.000000000434	N/A	N/A
structural_annotation	UHGV-0080392_12	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_13	phrog_820	116.5	1.7e-34	major tail protein	tail
UniRef90	UHGV-0080392_13	UniRef90_T3DDR1	179.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0080392_13	1151292.QEW_2426	179.0	0	N/A	N/A
structural_annotation	UHGV-0080392_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_14	phrog_2595	81.1	1.2e-23	head-tail connector protein	connector
UniRef90	UHGV-0080392_14	UniRef90_UPI001D068DAC	136.0	1.2e-38	minor capsid protein	N/A
eggNOG-mapper	UHGV-0080392_14	742740.HMPREF9474_03510	124.0	1.01e-34	N/A	N/A
Pfam	UHGV-0080392_14	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0080392_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_15	phrog_556	61.4	1.5e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0080392_15	742740.HMPREF9474_03509	140.0	5.04005e-41	N/A	N/A
PHROG	UHGV-0080392_16	phrog_8710	134.6	3e-40	N/A	unknown function
eggNOG-mapper	UHGV-0080392_16	742740.HMPREF9474_03508	128.0	6.08e-37	N/A	N/A
structural_annotation	UHGV-0080392_16	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_17	phrog_541	66.7	3.8e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0080392_17	1304866.K413DRAFT_0783	145.0	1.58347e-43	N/A	N/A
PHROG	UHGV-0080392_18	phrog_1378	74.2	1.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0080392_18	742740.HMPREF9474_03506	69.7	0.0000000000000373	N/A	N/A
PHROG	UHGV-0080392_19	phrog_422	357.7	0	major head protein	head and packaging
UniRef90	UHGV-0080392_19	UniRef90_A0A356C4N2	555.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0080392_19	742740.HMPREF9474_03505	467.0	0	N/A	N/A
structural_annotation	UHGV-0080392_19	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_20	phrog_2303	139.7	2.09999e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0080392_20	742740.HMPREF9474_03504	143.0	7.63e-40	N/A	N/A
PHROG	UHGV-0080392_21	phrog_872	182.2	0	N/A	unknown function
UniRef90	UHGV-0080392_21	UniRef90_A0A413P9Z7	305.0	0	N/A	N/A
eggNOG-mapper	UHGV-0080392_21	749222.Nitsa_1194	176.0	0	N/A	N/A
Pfam	UHGV-0080392_21	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0080392_21	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0080392_21	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_23	phrog_581	246.9	0	minor head protein	head and packaging
UniRef90	UHGV-0080392_23	UniRef90_A0A413YU28	644.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0080392_23	33035.JPJF01000093_gene2255	442.0	0	N/A	N/A
Pfam	UHGV-0080392_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0080392_23	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0080392_23	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_24	phrog_533	287.0	0	portal protein	head and packaging
UniRef90	UHGV-0080392_24	UniRef90_A0A413YU90	956.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0080392_24	33035.JPJF01000093_gene2257	551.0	0	N/A	N/A
Pfam	UHGV-0080392_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0080392_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0080392_25	K06909	97.7	1.6e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0080392_25	phrog_2	70.8	3.1e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0080392_25	UniRef90_A0A413YU24	953.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0080392_25	1294142.CINTURNW_1023	525.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0080392_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0080392_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0080392_25	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0080392_26	K07474	152.5	4.2039e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0080392_26	phrog_51	161.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0080392_26	UniRef90_A0A413YU49	367.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0080392_26	1499683.CCFF01000014_gene3916	148.0	1.98984e-42	Terminase small subunit	N/A
Pfam	UHGV-0080392_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0080392_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0080392_26	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_27	phrog_36	65.9	8.2e-19	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0080392_27	397290.C810_01391	102.0	9.36e-26	N/A	N/A
structural_annotation	UHGV-0080392_27	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_28	phrog_625	66.1	2.1e-19	N/A	unknown function
UniRef90	UHGV-0080392_28	UniRef90_A0A413YU40	207.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0080392_28	397290.C810_01502	123.0	1.79e-34	N/A	N/A
structural_annotation	UHGV-0080392_28	PF12961,COG2028	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0080392_29	397290.C810_01505	135.0	1.52999e-40	N/A	N/A
PHROG	UHGV-0080392_30	phrog_20593	58.2	1.3e-16	N/A	unknown function
PHROG	UHGV-0080392_34	phrog_15077	98.8	1.1e-28	N/A	unknown function
UniRef90	UHGV-0080392_34	UniRef90_A0A3A6HZA9	210.0	0	N/A	N/A
eggNOG-mapper	UHGV-0080392_34	483218.BACPEC_01165	208.0	0	N/A	N/A
structural_annotation	UHGV-0080392_34	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_35	phrog_8470	287.6	0	N/A	unknown function
UniRef90	UHGV-0080392_35	UniRef90_UPI00164C094F	200.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0080392_35	483218.BACPEC_01166	387.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0080392_35	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0080392_35	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0080392_36	483218.BACPEC_01167	209.0	0	N/A	N/A
PHROG	UHGV-0080392_38	phrog_7566	77.1	1.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0080392_38	483218.BACPEC_01171	60.5	0.0000000000709	N/A	N/A
structural_annotation	UHGV-0080392_39	PF19962,NF011863	N/A	N/A	N/A	N/A
KOfam	UHGV-0080392_40	K03469	64.4	2.5e-18	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0080392_40	phrog_531	63.1	5.2e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080392_40	UniRef90_A0A413YU26	265.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0080392_40	1121447.JONL01000002_gene2134	76.6	0.00000000000000123	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0080392_40	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0080392_40	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0080392_40	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_41	phrog_3584	242.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0080392_41	UniRef90_A0A4P8IFK4	344.0	0	N/A	N/A
eggNOG-mapper	UHGV-0080392_41	742741.HMPREF9475_00404	296.0	0	N/A	N/A
structural_annotation	UHGV-0080392_41	PF21578	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0080392_44	NF040556	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080392_45	UniRef90_A0A413YU34	128.0	1.35e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0080392_45	706433.HMPREF9430_01294	80.5	3.64e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0080392_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0080392_45	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0080392_46	K22299	64.2	3.2e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0080392_46	phrog_8	75.8	8.5e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0080392_46	UniRef90_A0A413YU20	253.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0080392_46	553973.CLOHYLEM_07297	89.4	2.29e-21	Transcriptional	N/A
PADLOC	UHGV-0080392_46	retron_type_VI_hth_cluster2_1	53.4	0.0000000000000054	N/A	Retron
Pfam	UHGV-0080392_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0080392_46	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0080392_46	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0080392_47	phrog_20936	51.2	0.000000000000025	N/A	unknown function
UniRef90	UHGV-0080392_47	UniRef90_UPI0013E038FD	53.9	0.0000000656	ImmA/IrrE family metallo-endopeptidase	N/A
structural_annotation	UHGV-0080392_47	PF06114	N/A	N/A	N/A	N/A
UniRef90	UHGV-0080392_48	UniRef90_UPI001C10185D	162.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0080392_48	1123263.AUKY01000072_gene2115	131.0	8.12e-36	N/A	N/A
structural_annotation	UHGV-0080392_48	PF13424,TIGR01641	N/A	N/A	N/A	N/A
Pfam	UHGV-0080392_49	PF04434	N/A	N/A	SWIM zinc finger	SWIM
KOfam	UHGV-0080392_50	K06400	234.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0080392_50	phrog_95	259.3	0	integrase	integration and excision
UniRef90	UHGV-0080392_50	UniRef90_UPI001C0F7357	631.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0080392_50	1256908.HMPREF0373_00206	622.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0080392_50	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0080392_50	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0080392_50	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0080392_50	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0080392	Yes	36,066	38	95	1
UHGV-1845411	No	16,896	39	44	1
UHGV-1557577	No	11,285	39	30	1