vOTU vOTU-077577

vOTU: vOTU-077577

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-077577
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00367 → vGENUS-00574 → vSUBGEN-21816 → vOTU-077577
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0150556
Biosample ID	SAMN05827216
Genome length (bp)	40,349 bps
CheckV completeness	99.07% (High-quality)
CDS count	76
CDS density	90.25%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	662	Host agreement	98.34
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	8	Host agreement	87.5

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0150556_4	PF09943	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_6	phrog_2872	210.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0150556_6	UniRef90_UPI00058FD242	298.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0150556_6	1345695.CLSA_c30180	294.0	0	AAA domain	N/A
structural_annotation	UHGV-0150556_6	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_7	phrog_18107	47.9	0.00000000000012	N/A	unknown function
UniRef90	UHGV-0150556_7	UniRef90_R6I207	75.1	0.000000000000175	PF05037 family protein	N/A
eggNOG-mapper	UHGV-0150556_7	903814.ELI_1274	136.0	4.18e-38	N/A	N/A
structural_annotation	UHGV-0150556_7	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_8	phrog_15768	61.2	2.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0150556_8	1121344.JHZO01000003_gene982	62.8	0.00000000381	N/A	N/A
Pfam	UHGV-0150556_8	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0150556_8	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_9	phrog_9804	158.0	0	N/A	unknown function
UniRef90	UHGV-0150556_9	UniRef90_UPI0018976F94	351.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0150556_9	1121344.JHZO01000003_gene981	184.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0150556_9	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0150556_9	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_10	phrog_1770	111.3	8.8e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0150556_10	UniRef90_A0A533R9G2	99.4	1.04e-23	Holliday junction endonuclease	N/A
eggNOG-mapper	UHGV-0150556_10	994601.G9BW80_9CAUD	95.1	8.22e-23	nucleic acid binding	N/A
structural_annotation	UHGV-0150556_10	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
UniRef90	UHGV-0150556_12	UniRef90_UPI001D073C08	89.0	4.95e-21	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0150556_12	742738.HMPREF9460_04054	52.0	0.000000314	Restriction alleviation protein Lar	N/A
structural_annotation	UHGV-0150556_12	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_13	phrog_25732	54.6	4.4e-16	N/A	unknown function
UniRef90	UHGV-0150556_13	UniRef90_UPI001898061F	171.0	0	N/A	N/A
structural_annotation	UHGV-0150556_14	NF000937	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_16	phrog_38832	88.8	4.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0150556_16	665956.HMPREF1032_03087	135.0	4.54e-39	N/A	N/A
PHROG	UHGV-0150556_20	phrog_8684	81.3	2.2e-24	N/A	unknown function
UniRef90	UHGV-0150556_20	UniRef90_A0A1C6CH94	143.0	5.16995e-41	YopX protein	N/A
eggNOG-mapper	UHGV-0150556_20	1226322.HMPREF1545_00036	84.0	1.01e-18	YopX protein	N/A
Pfam	UHGV-0150556_20	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0150556_20	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0150556_22	K22299	56.2	8.8e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0150556_22	phrog_8	71.7	1.4e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0150556_22	UniRef90_A0A4D7AHN1	154.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0150556_22	1226322.HMPREF1545_00039	77.4	8.01e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0150556_22	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0150556_22	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0150556_22	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0150556_23	UniRef90_UPI0018A8F249	256.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0150556_23	1235790.C805_00037	134.0	2.55e-38	N/A	N/A
structural_annotation	UHGV-0150556_23	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0150556_24	K06909	121.7	6.9e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0150556_24	phrog_10250	161.4	0	N/A	unknown function
UniRef90	UHGV-0150556_24	UniRef90_UPI0018A99FCF	807.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0150556_24	476272.RUMHYD_01756	472.0	0	N/A	N/A
Pfam	UHGV-0150556_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0150556_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0150556_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0150556_24	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_25	phrog_64	163.9	0	portal protein	head and packaging
UniRef90	UHGV-0150556_25	UniRef90_UPI0018A8A301	813.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0150556_25	673376.F2VHW1_9CAUD	217.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0150556_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0150556_25	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_26	phrog_2468	117.6	1.5e-34	head morphogenesis	head and packaging
UniRef90	UHGV-0150556_26	UniRef90_A0A1C7FSE6	608.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0150556_26	1504822.CCNO01000013_gene286	178.0	0	cell adhesion	N/A
Pfam	UHGV-0150556_26	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0150556_26	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0150556_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0150556_26	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_27	phrog_5	88.6	9e-26	tail completion or Neck1 protein	connector
UniRef90	UHGV-0150556_27	UniRef90_UPI0018AA0B5A	281.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0150556_27	1280685.AUKC01000004_gene1630	112.0	7.18e-30	N/A	N/A
Pfam	UHGV-0150556_27	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0150556_27	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0150556_27	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
Pfam	UHGV-0150556_31	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-0150556_31	PF03869,NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_32	phrog_194	50.6	0.00000000000004	head scaffolding protein	head and packaging
UniRef90	UHGV-0150556_32	UniRef90_A0A6B9SU02	154.0	1.14906e-43	Fibronectin autolysin	N/A
structural_annotation	UHGV-0150556_32	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_33	phrog_544	115.8	3.6e-34	major head protein	head and packaging
UniRef90	UHGV-0150556_33	UniRef90_A0A1C6B5R0	324.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0150556_33	476272.RUMHYD_01776	312.0	0	N/A	N/A
structural_annotation	UHGV-0150556_33	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0150556_34	1226322.HMPREF1545_00051	195.0	0	N/A	N/A
PHROG	UHGV-0150556_36	phrog_17977	85.7	3.5e-25	N/A	unknown function
UniRef90	UHGV-0150556_36	UniRef90_UPI00141211AB	115.0	7.02e-31	head-tail adaptor protein	N/A
structural_annotation	UHGV-0150556_36	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_37	phrog_1233	84.4	1.4e-24	N/A	unknown function
UniRef90	UHGV-0150556_37	UniRef90_UPI001C39EFB9	122.0	1.48e-33	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-0150556_37	357809.Cphy_2967	142.0	2.51953e-42	N/A	N/A
structural_annotation	UHGV-0150556_38	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_39	phrog_885	103.6	1.9e-30	major tail protein	tail
UniRef90	UHGV-0150556_39	UniRef90_A0A843J9F0	181.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0150556_39	1111121.HMPREF1247_0789	184.0	0	N/A	N/A
PHROG	UHGV-0150556_40	phrog_18646	70.3	2.6e-20	N/A	unknown function
UniRef90	UHGV-0150556_40	UniRef90_B6CXF0	77.8	4.12e-16	Peptidase-colicin	N/A
PHROG	UHGV-0150556_42	phrog_6900	267.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0150556_42	1499683.CCFF01000017_gene2565	322.0	0	tape measure	N/A
COG	UHGV-0150556_42	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0150556_42	MF_04138,COG5281	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0150556_43	1235797.C816_02660	53.9	0.00000032	N/A	N/A
structural_annotation	UHGV-0150556_43	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_44	phrog_13879	601.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0150556_44	1235797.C816_02659	679.0	0	N/A	N/A
structural_annotation	UHGV-0150556_44	PF14594,PF06588,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_46	phrog_11157	292.6	0	N/A	unknown function
UniRef90	UHGV-0150556_46	UniRef90_G9YSD2	676.0	0	Big_13 domain-containing protein	N/A
eggNOG-mapper	UHGV-0150556_46	1235797.C816_02657	261.0	0	N/A	N/A
Pfam	UHGV-0150556_46	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0150556_46	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0150556_46	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0150556_46	PF09136,PF13750,MF_04116,NF032891,COG2372	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0150556_47	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_49	phrog_2310	58.8	5.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0150556_51	742738.HMPREF9460_03967	221.0	0	N/A	N/A
KOfam	UHGV-0150556_52	K01448	174.8	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0150556_52	phrog_435	167.3	0	endolysin	lysis
UniRef90	UHGV-0150556_52	UniRef90_UPI0018AB799F	589.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0150556_52	742738.HMPREF9460_03968	416.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0150556_52	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0150556_52	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0150556_52	PF09992,PF01510,PF18342,NF008758,NF040678,COG5632,COG4632,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_53	phrog_1129	77.1	1.5e-22	holin	lysis
UniRef90	UHGV-0150556_53	UniRef90_A0A1C7FPV3	164.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0150556_53	1226322.HMPREF1545_00069	139.0	3.62936e-42	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0150556_53	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0150556_53	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_54	phrog_4105	73.5	2.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0150556_54	537013.CLOSTMETH_01753	73.6	0.00000000000000141	N/A	N/A
UniRef90	UHGV-0150556_55	UniRef90_U2R3E6	67.0	0.000000000000585	KORA domain-containing protein	N/A
structural_annotation	UHGV-0150556_55	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_56	phrog_2384	299.6	0	N/A	unknown function
UniRef90	UHGV-0150556_56	UniRef90_R5DXY5	411.0	0	P63C domain-containing protein	N/A
eggNOG-mapper	UHGV-0150556_56	397287.C807_03074	390.0	0	P63C domain	N/A
Pfam	UHGV-0150556_56	PF10546	N/A	N/A	P63C domain	P63C
structural_annotation	UHGV-0150556_56	PF10546	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_58	phrog_3754	99.1	4.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0150556_58	476272.RUMHYD_01764	169.0	0	N/A	N/A
PHROG	UHGV-0150556_59	phrog_21718	123.6	1.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-0150556_59	397290.C810_05210	77.0	0.00000000000000136	N/A	N/A
PHROG	UHGV-0150556_60	phrog_22984	114.1	5.5e-34	N/A	unknown function
PHROG	UHGV-0150556_61	phrog_16490	306.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0150556_61	1226322.HMPREF1545_00076	236.0	0	N/A	N/A
PHROG	UHGV-0150556_62	phrog_20016	224.3	0	N/A	unknown function
UniRef90	UHGV-0150556_62	UniRef90_A0A285PT46	186.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0150556_62	1226322.HMPREF1545_00077	236.0	0	N/A	N/A
structural_annotation	UHGV-0150556_62	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_63	phrog_28802	50.6	0.000000000000055	N/A	unknown function
eggNOG-mapper	UHGV-0150556_63	476272.RUMHYD_01772	50.8	0.00000715	N/A	N/A
structural_annotation	UHGV-0150556_63	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0150556_64	1226322.HMPREF1545_00079	142.0	1.02995e-42	N/A	N/A
KOfam	UHGV-0150556_66	K14059	238.3	0	int; integrase	N/A
PHROG	UHGV-0150556_66	phrog_1	218.7	0	integrase	integration and excision
UniRef90	UHGV-0150556_66	UniRef90_UPI0018A8CCD8	600.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0150556_66	1321814.HMPREF9089_00905	204.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0150556_66	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0150556_66	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0150556_66	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0150556_66	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0150556_67	phrog_33872	51.2	6e-16	N/A	unknown function
UniRef90	UHGV-0150556_68	UniRef90_UPI001956EF77	217.0	0	stalk domain-containing protein	N/A
eggNOG-mapper	UHGV-0150556_68	693746.OBV_27580	106.0	1.3e-26	Copper amine oxidase N-terminal domain	N/A
Pfam	UHGV-0150556_68	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
PHROG	UHGV-0150556_69	phrog_87	52.0	0.0000000000000099	metallo-protease	other
UniRef90	UHGV-0150556_69	UniRef90_G9YWB6	292.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0150556_69	445972.ANACOL_01758	152.0	1.4013e-45	N/A	N/A
COG	UHGV-0150556_69	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0150556_69	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0150556_70	K22300	47.9	0.00000000000028	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0150556_70	phrog_8	54.1	0.0000000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-0150556_70	UniRef90_UPI0009522291	115.0	4.81e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0150556_70	742738.HMPREF9460_02485	114.0	3.46e-31	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0150556_70	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0150556_70	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0150556_70	PF01381,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0150556_71	K22300	52.8	0.0000000000000089	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0150556_71	phrog_8	50.3	0.000000000000051	transcriptional regulator	transcription regulation
UniRef90	UHGV-0150556_71	UniRef90_UPI0009FAA490	130.0	1.44e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0150556_71	1519439.JPJG01000066_gene2398	57.0	0.0000000132	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0150556_71	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0150556_71	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0150556_74	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0150556	Yes	40,349	53	99	1
UHGV-1391461	No	40,349	53	99	1
UHGV-0198896	No	31,474	53	77	1
UHGV-1492703	No	25,760	53	63	1
UHGV-1726811	No	14,792	53	35	1