vOTU vOTU-077694

vOTU: vOTU-077694

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-077694
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vSUBGEN-00561 → vOTU-077694
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0384074
Biosample ID	N/A
Genome length (bp)	34,244 bps
CheckV completeness	97.33% (High-quality)
CDS count	50
CDS density	91.42%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	2018	Host agreement	85.08
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	98	Host agreement	98.98

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0384074_1	K14059	107.2	2.4e-31	int; integrase	N/A
PHROG	UHGV-0384074_1	phrog_1	127.8	1.1e-37	integrase	integration and excision
UniRef90	UHGV-0384074_1	UniRef90_A0A1G5CL52	753.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0384074_1	693746.OBV_41260	191.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0384074_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0384074_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0384074_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0384074_2	UniRef90_UPI000E52DA24	734.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-0384074_2	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-0384074_2	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_3	phrog_1914	149.0	2.66247e-44	N/A	unknown function
UniRef90	UHGV-0384074_3	UniRef90_A0A374NDM7	338.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0384074_3	1160721.RBI_I01604	171.0	0	N/A	N/A
Pfam	UHGV-0384074_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0384074_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0384074_3	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0384074_4	UniRef90_A0A373XLN2	277.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0384074_4	1235793.C809_00679	99.0	5.83e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0384074_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0384074_4	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0384074_5	UniRef90_UPI001494A832	48.9	0.00000401	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0384074_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0384074_5	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_7	phrog_585	115.3	3.7e-34	N/A	unknown function
UniRef90	UHGV-0384074_7	UniRef90_UPI00051C896C	144.0	4.64951e-42	N/A	N/A
eggNOG-mapper	UHGV-0384074_7	1033744.CAEL01000029_gene1306	129.0	1.65e-36	N/A	N/A
Pfam	UHGV-0384074_7	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0384074_7	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
KOfam	UHGV-0384074_9	K00390	95.4	5.8e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0384074_9	phrog_424	121.8	5.1e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0384074_9	UniRef90_UPI001C034617	594.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0384074_9	1408437.JNJN01000032_gene2312	336.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0384074_9	BrxP_00001	79.4	2.7e-23	BrxP	BREX
Pfam	UHGV-0384074_9	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0384074_9	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0384074_9	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0384074_11	UniRef90_UPI0015F48AC0	162.0	0	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0384074_11	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0384074_11	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_12	phrog_6058	42.4	0.0000000000073	N/A	unknown function
structural_annotation	UHGV-0384074_12	NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0384074_13	COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-0384074_16	K03427	44.1	0.0000000000023	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0384074_16	phrog_5696	212.9	0	N/A	unknown function
UniRef90	UHGV-0384074_16	UniRef90_UPI001B3C9C54	248.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0384074_16	397291.C804_06560	149.0	1.37005e-41	N-6 DNA Methylase	N/A
Pfam	UHGV-0384074_16	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0384074_16	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0384074_16	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_17	phrog_323	77.2	7.1e-26	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384074_17	UniRef90_UPI001C01CFF8	294.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0384074_17	394503.Ccel_3305	343.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-0384074_17	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0384074_17	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-0384074_18	K04763	205.0	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0384074_18	phrog_1	162.5	0	integrase	integration and excision
UniRef90	UHGV-0384074_18	UniRef90_UPI001B3C6404	382.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0384074_18	1235793.C809_01951	224.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0384074_18	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0384074_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0384074_18	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0384074_18	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_19	phrog_24518	81.2	1.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0384074_19	1519439.JPJG01000077_gene922	110.0	1.35e-27	N/A	N/A
PHROG	UHGV-0384074_20	phrog_824	144.6	2.90069e-43	N/A	unknown function
UniRef90	UHGV-0384074_20	UniRef90_A0A3D3D6C6	247.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0384074_20	397288.C806_00096	157.0	0	VRR_NUC	N/A
Pfam	UHGV-0384074_20	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0384074_20	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_23	phrog_3584	149.1	2.8026e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0384074_23	1235800.C819_00515	70.9	0.00000000000973	N/A	N/A
structural_annotation	UHGV-0384074_23	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0384074_24	431943.CKL_4074	50.4	0.00000632	N/A	N/A
structural_annotation	UHGV-0384074_24	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_25	phrog_119	68.8	7.5e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384074_25	UniRef90_A0A412ULY9	223.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0384074_25	1158607.UAU_01026	100.0	4.13e-26	HNH endonuclease	N/A
Pfam	UHGV-0384074_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0384074_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0384074_26	phrog_5110	83.1	2.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0384074_26	UniRef90_A0A1M5U1D5	113.0	1.2e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0384074_26	1211817.CCAT010000053_gene2128	101.0	1.56e-26	N/A	N/A
Pfam	UHGV-0384074_26	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0384074_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_27	phrog_9	304.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0384074_27	UniRef90_A0A412UM03	1015.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0384074_27	86416.Clopa_0337	635.0	0	Phage Terminase	N/A
Pfam	UHGV-0384074_27	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0384074_27	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0384074_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0384074_27	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_28	phrog_12	97.3	1.3e-28	portal protein	head and packaging
UniRef90	UHGV-0384074_28	UniRef90_A0A412ULV9	749.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0384074_28	349161.Dred_2606	257.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0384074_28	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0384074_28	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0384074_28	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0384074_28	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0384074_29	K01358	141.9	6.00036e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0384074_29	phrog_94	210.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0384074_29	UniRef90_A0A412ULU1	466.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0384074_29	86416.Clopa_0340	177.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0384074_29	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0384074_29	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0384074_29	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_30	phrog_10	127.1	1.6e-37	major head protein	head and packaging
UniRef90	UHGV-0384074_30	UniRef90_A0A412ULW9	732.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0384074_30	1211817.CCAT010000053_gene2132	323.0	0	Phage capsid family	N/A
Pfam	UHGV-0384074_30	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0384074_30	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0384074_30	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0384074_30	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_31	phrog_749	55.6	7.9e-16	N/A	unknown function
UniRef90	UHGV-0384074_31	UniRef90_A0A1G5CMX8	107.0	3.03e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0384074_31	1211817.CCAT010000053_gene2133	57.0	0.00000000329	N/A	N/A
PHROG	UHGV-0384074_32	phrog_19734	71.7	8.9e-21	N/A	unknown function
UniRef90	UHGV-0384074_32	UniRef90_UPI00057FE645	57.8	0.000000018	phage head closure protein	N/A
eggNOG-mapper	UHGV-0384074_32	86416.Clopa_0343	60.5	0.000000000326	N/A	N/A
NCBIFam	UHGV-0384074_32	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0384074_32	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0384074_33	272623.L59277	51.2	0.000000845	N/A	N/A
structural_annotation	UHGV-0384074_33	PF05657,TIGR04412	N/A	N/A	N/A	N/A
UniRef90	UHGV-0384074_34	UniRef90_UPI000E5564A4	269.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0384074_34	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0384074_34	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_35	phrog_88	76.2	4e-22	major tail protein	tail
UniRef90	UHGV-0384074_35	UniRef90_A0A1G5CNS8	151.0	5.5071e-43	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0384074_35	1321782.HMPREF1986_01362	65.1	0.000000000192	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0384074_35	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0384074_35	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0384074_36	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0384074_38	K20283	50.7	0.0000000000000052	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0384074_38	phrog_1272	276.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0384074_38	UniRef90_A0A412ULX0	1555.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0384074_38	588581.Cpap_1264	237.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0384074_38	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0384074_38	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0384074_38	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_39	phrog_33	81.8	1.4e-23	distal tail protein Dit	tail
UniRef90	UHGV-0384074_39	UniRef90_A0A1G5CPA2	134.0	1.69e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-0384074_39	1444306.JFZC01000034_gene2623	91.7	2.36e-19	tail component	N/A
COG	UHGV-0384074_39	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0384074_39	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_40	phrog_1067	93.8	4.4e-28	minor head protein	head and packaging
UniRef90	UHGV-0384074_40	UniRef90_A0A1G5CPD2	152.0	1.43e-38	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0384074_40	1462527.CCDM010000003_gene3730	57.8	0.00000442	gp58-like protein	N/A
NCBIFam	UHGV-0384074_40	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0384074_40	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0384074_40	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0384074_41	UniRef90_A0A374N9Y2	209.0	0	N/A	N/A
structural_annotation	UHGV-0384074_41	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-0384074_43	phrog_1863	71.5	9.5e-22	N/A	unknown function
UniRef90	UHGV-0384074_43	UniRef90_UPI001F223E8B	90.9	2.7e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0384074_43	1203606.HMPREF1526_02027	81.6	1.99e-19	N/A	N/A
PHROG	UHGV-0384074_44	phrog_443	63.7	4.6e-18	holin	lysis
UniRef90	UHGV-0384074_44	UniRef90_R6R2Q3	87.0	3.69e-21	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0384074_44	1298920.KI911353_gene2669	83.6	1.5e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0384074_44	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0384074_44	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0384074_45	K01447	57.6	2.6e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0384074_45	phrog_20388	305.2	0	endolysin	lysis
UniRef90	UHGV-0384074_45	UniRef90_A0A374N1L8	563.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0384074_45	1203606.HMPREF1526_00253	313.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0384074_45	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0384074_45	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0384074_45	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0384074_45	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0384074_48	PF21291,NF041951,COG3655	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0384074	Yes	34,244	40	97	1