vOTU vOTU-077896

vOTU: vOTU-077896

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-077896
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella biformis
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-00170 → vGENUS-00088 → vSUBGEN-34972 → vOTU-077896
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0288427
Biosample ID	SAMN11265248
Genome length (bp)	42,172 bps
CheckV completeness	93.86% (High-quality)
CDS count	68
CDS density	89.61%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	169	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella biformis	Total connections	5	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0288427_2	K01448	62.4	5.8e-18	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0288427_2	phrog_435	94.1	2.3e-27	endolysin	lysis
UniRef90	UHGV-0288427_2	UniRef90_A0A1Y4LVU1	244.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0288427_2	1384484.AEQU_1161	68.6	0.0000000000171	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0288427_2	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0288427_2	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0288427_2	PF01520,TIGR02883,COG0860	N/A	N/A	N/A	N/A
UniRef90	UHGV-0288427_3	UniRef90_B7C9V1	306.0	0	Putative bacteriocin transport accessory protein	N/A
eggNOG-mapper	UHGV-0288427_3	518637.EUBIFOR_01008	306.0	0	COG0526, thiol-disulfide isomerase and thioredoxins	N/A
Pfam	UHGV-0288427_3	PF13728	N/A	N/A	F plasmid transfer operon protein	TraF
COG	UHGV-0288427_3	COG0526	N/A	N/A	Thiol-disulfide isomerase or thioredoxin	N/A
UniRef90	UHGV-0288427_4	UniRef90_A0A412I387	500.0	0	N/A	N/A
eggNOG-mapper	UHGV-0288427_4	518637.EUBIFOR_01009	541.0	0	N/A	N/A
PADLOC	UHGV-0288427_4	drt-cluster579	113.1	5.3e-33	DRT	DRT
Pfam	UHGV-0288427_4	PF08902	N/A	N/A	N/A	DUF1848
COG	UHGV-0288427_4	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-0288427_4	PF08902,MF_01873,NF033719,COG0820	N/A	N/A	N/A	N/A
KOfam	UHGV-0288427_5	K01447	67.1	3.7e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0288427_5	phrog_7698	165.9	0	endolysin	lysis
UniRef90	UHGV-0288427_5	UniRef90_A0A413UF85	679.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0288427_5	1033733.CAEK01000007_gene1632	144.0	1.02e-37	Bacterial SH3 domain	N/A
Pfam	UHGV-0288427_5	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0288427_5	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-0288427_5	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0288427_5	PF01510,PF18342,PF08239,MF_04111,NF040670,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_7	phrog_443	54.1	0.0000000000000046	holin	lysis
UniRef90	UHGV-0288427_7	UniRef90_A0A2U2ELA1	78.2	1.41e-17	Membrane protein	N/A
eggNOG-mapper	UHGV-0288427_7	476272.RUMHYD_01759	84.0	1.68e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0288427_7	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0288427_7	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_9	phrog_20016	61.5	1.1e-17	N/A	unknown function
UniRef90	UHGV-0288427_9	UniRef90_A0A395WF88	261.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0288427_9	1226322.HMPREF1545_00077	58.5	0.00000000626	N/A	N/A
Pfam	UHGV-0288427_9	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-0288427_9	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0288427_10	476272.RUMHYD_01770	92.8	1.68e-20	N/A	N/A
COG	UHGV-0288427_15	COG0726	N/A	N/A	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	N/A
structural_annotation	UHGV-0288427_16	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0288427_17	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0288427_18	PF10651,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_19	phrog_1067	50.8	1.8e-21	minor head protein	head and packaging
eggNOG-mapper	UHGV-0288427_19	1232446.BAIE02000002_gene836	75.5	0.0000000000202	Phage minor structural protein	N/A
NCBIFam	UHGV-0288427_19	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0288427_19	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0288427_19	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
COG	UHGV-0288427_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0288427_20	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0288427_21	K10352	49.3	0.0000000000000082	MYH9s; myosin heavy chain 9/10/11/14	N/A
PHROG	UHGV-0288427_21	phrog_13339	341.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0288427_21	UniRef90_A0A395WD11	1969.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0288427_21	411490.ANACAC_00710	256.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0288427_21	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0288427_21	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0288427_21	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0288427_21	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_22	phrog_709	45.7	0.0000000000011	N/A	unknown function
structural_annotation	UHGV-0288427_22	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_23	phrog_88	149.7	1.4013e-44	major tail protein	tail
UniRef90	UHGV-0288427_23	UniRef90_A0A395WA58	396.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0288427_23	1111134.HMPREF1253_0377	151.0	1.90577e-43	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0288427_23	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0288427_23	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0288427_24	UniRef90_A0A374RUJ8	142.0	3.55005e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0288427_24	86416.Clopa_0344	58.9	0.00000000323	N/A	N/A
Pfam	UHGV-0288427_24	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0288427_24	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0288427_25	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_26	phrog_1951	73.8	1.7e-21	head-tail adaptor	connector
UniRef90	UHGV-0288427_26	UniRef90_A0A395WC07	230.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0288427_26	588581.Cpap_1270	63.5	0.0000000000167	N/A	N/A
structural_annotation	UHGV-0288427_26	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_27	phrog_5223	51.5	0.000000000000015	neck protein	connector
UniRef90	UHGV-0288427_27	UniRef90_A0A374RXD1	81.3	4.4e-18	DNA-packaging protein	N/A
structural_annotation	UHGV-0288427_27	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_28	phrog_10	78.6	9.1e-23	major head protein	head and packaging
UniRef90	UHGV-0288427_28	UniRef90_A0A395WF70	802.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0288427_28	1536774.H70357_10630	169.0	7.00649e-45	Phage capsid family	N/A
Pfam	UHGV-0288427_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0288427_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0288427_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0288427_28	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0288427_29	K06904	89.4	5.7e-26	N/A	N/A
PHROG	UHGV-0288427_29	phrog_80	117.2	2.2e-34	head maturation protease	head and packaging
UniRef90	UHGV-0288427_29	UniRef90_A0A413UET6	347.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0288427_29	411470.RUMGNA_02064	175.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0288427_29	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0288427_29	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0288427_29	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0288427_29	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_30	phrog_12	102.9	2.6e-30	portal protein	head and packaging
UniRef90	UHGV-0288427_30	UniRef90_A0A395W9X2	829.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0288427_30	1203606.HMPREF1526_01337	293.0	0	Portal protein	N/A
Pfam	UHGV-0288427_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0288427_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0288427_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_31	phrog_9	309.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0288427_31	UniRef90_A0A395WD03	1121.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0288427_31	742740.HMPREF9474_04307	547.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0288427_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0288427_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0288427_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0288427_31	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_32	phrog_361	78.2	9.8e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0288427_32	UniRef90_A0A7C6YMQ8	70.1	0.000000000000519	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0288427_32	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0288427_32	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0288427_32	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_33	phrog_119	60.2	3.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0288427_33	UniRef90_A0A395WA48	261.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0288427_33	1211814.CAPG01000074_gene3460	64.3	0.0000000000107	HNH endonuclease	N/A
Pfam	UHGV-0288427_33	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0288427_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0288427_41	phrog_4525	69.6	6e-20	N/A	unknown function
PHROG	UHGV-0288427_42	phrog_2316	44.6	0.0000000000029	N/A	unknown function
UniRef90	UHGV-0288427_42	UniRef90_A0A3E4YBW5	118.0	5.78e-33	N/A	N/A
eggNOG-mapper	UHGV-0288427_42	1227349.C170_11270	56.2	0.00000000464	N/A	N/A
structural_annotation	UHGV-0288427_42	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
UniRef90	UHGV-0288427_44	UniRef90_A0A413UEX6	292.0	0	N/A	N/A
Pfam	UHGV-0288427_44	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0288427_44	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0288427_50	PF17399	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_51	phrog_954	248.1	0	DNA methyltransferase	other
UniRef90	UHGV-0288427_51	UniRef90_A0A413UEW6	319.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0288427_51	1321779.HMPREF1984_00119	252.0	0	methyltransferase	N/A
PADLOC	UHGV-0288427_51	MTase_II_00074	247.6	0	Type II methyltransferase	RM
COG	UHGV-0288427_51	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0288427_51	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0288427_54	PF17399	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0288427_59	PF19801	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_60	phrog_4601	42.3	0.000000000012	N/A	unknown function
structural_annotation	UHGV-0288427_60	PF17888	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_61	phrog_173	112.8	3.4e-33	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0288427_61	UniRef90_UPI001C25836D	233.0	0	dUTPase	N/A
eggNOG-mapper	UHGV-0288427_61	218284.CCDN010000001_gene545	77.8	9.68e-16	dUTPase	N/A
Pfam	UHGV-0288427_61	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0288427_61	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0288427_61	PF08761,COG4508	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0288427_62	PF11184	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_63	phrog_2715	122.8	2.2e-36	N/A	unknown function
eggNOG-mapper	UHGV-0288427_63	642492.Clole_0950	131.0	3.39e-37	N/A	N/A
structural_annotation	UHGV-0288427_63	PF18406	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0288427_64	428127.EUBDOL_01513	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0288427_65	658655.HMPREF0988_00884	87.8	1.27e-20	N/A	N/A
KOfam	UHGV-0288427_67	K02315	119.4	4.4e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0288427_67	phrog_50	107.5	1.6e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0288427_67	UniRef90_A0A395WER8	526.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0288427_67	1211844.CBLM010000016_gene1509	130.0	1.06e-33	N/A	N/A
Pfam	UHGV-0288427_67	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-0288427_67	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0288427_67	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0288427_68	phrog_428	151.0	9.80909e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0288427_68	UniRef90_A0A395WBX6	394.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0288427_68	279808.SH2379	154.0	2.5924e-43	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0288427_68	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0288427_68	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0288427_68	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0288427_68	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0288427	Yes	42,172	33	94	1