vOTU vOTU-077958

vOTU: vOTU-077958

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-077958
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00771 → vGENUS-17713 → vSUBGEN-33119 → vOTU-077958
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900546515
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0015413
Biosample ID	SAMEA4766007
Genome length (bp)	39,041 bps
CheckV completeness	97.69% (High-quality)
CDS count	60
CDS density	91.83%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900546515	Total connections	23	Host agreement	95.65
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0015413_1	1226322.HMPREF1545_00079	119.0	2.05e-33	N/A	N/A
structural_annotation	UHGV-0015413_2	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_3	phrog_20016	200.5	0	N/A	unknown function
UniRef90	UHGV-0015413_3	UniRef90_A0A285PT46	205.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0015413_3	1226322.HMPREF1545_00077	186.0	0	N/A	N/A
structural_annotation	UHGV-0015413_3	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_5	phrog_16490	149.2	2.52234e-44	N/A	unknown function
eggNOG-mapper	UHGV-0015413_5	1408437.JNJN01000043_gene803	125.0	2.78e-32	N/A	N/A
PHROG	UHGV-0015413_6	phrog_22984	69.3	1.6e-20	N/A	unknown function
PHROG	UHGV-0015413_7	phrog_21718	104.3	1.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0015413_7	397290.C810_05210	102.0	3.25e-25	N/A	N/A
PHROG	UHGV-0015413_8	phrog_3754	107.8	8.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-0015413_8	476272.RUMHYD_01764	155.0	0	N/A	N/A
PHROG	UHGV-0015413_9	phrog_2104	40.3	0.000000000046	N/A	unknown function
UniRef90	UHGV-0015413_9	UniRef90_X8K268	81.6	5.41e-19	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0015413_9	888727.HMPREF9092_0491	81.6	9.07e-20	Helix-turn-helix	N/A
Pfam	UHGV-0015413_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0015413_9	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
Pfam	UHGV-0015413_13	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
PHROG	UHGV-0015413_14	phrog_1129	63.9	1.9e-18	holin	lysis
UniRef90	UHGV-0015413_14	UniRef90_R6H6W8	122.0	1.19e-34	Putative holin	N/A
eggNOG-mapper	UHGV-0015413_14	1226322.HMPREF1545_00069	111.0	5.87e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0015413_14	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0015413_14	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_15	phrog_937	50.6	0.000000000000034	hemolysin	other
eggNOG-mapper	UHGV-0015413_15	1297617.JPJD01000099_gene2176	73.6	6.7e-16	N/A	N/A
PHROG	UHGV-0015413_16	phrog_9589	129.5	2e-38	endolysin	lysis
UniRef90	UHGV-0015413_16	UniRef90_H1CBS8	329.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0015413_16	552398.HMPREF0866_03091	206.0	0	CHAP domain	N/A
Pfam	UHGV-0015413_16	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0015413_16	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0015413_16	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0015413_16	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0015413_16	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015413_17	PF21582,NF038128	N/A	N/A	N/A	N/A
KOfam	UHGV-0015413_18	K20846	64.4	9.2e-19	cgkA; kappa-carrageenase [EC:3.2.1.83]	N/A
PHROG	UHGV-0015413_18	phrog_215	90.2	1.9e-26	structural protein with Ig domain	head and packaging
eggNOG-mapper	UHGV-0015413_18	1449050.JNLE01000003_gene1165	82.4	0.000000000000245	Bacterial Ig-like domain 2	N/A
Pfam	UHGV-0015413_18	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0015413_18	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-0015413_18	PF02368,PF09423,MF_00575,NF003743,NF005261,COG5492	N/A	N/A	N/A	N/A
COG	UHGV-0015413_19	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0015413_20	phrog_9534	119.3	4.1e-35	head protein	head and packaging
UniRef90	UHGV-0015413_20	UniRef90_A0A369WDM5	79.3	0.000000000000249	Phage tail protein	N/A
eggNOG-mapper	UHGV-0015413_20	491915.Aflv_0675	85.5	9.42e-16	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0015413_20	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0015413_21	phrog_538	110.9	1.2e-32	minor tail protein	tail
UniRef90	UHGV-0015413_21	UniRef90_UPI001C113FEF	374.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0015413_21	931626.Awo_c30930	65.1	0.00000000726	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0015413_21	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0015413_21	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_22	phrog_36410	56.1	4.7e-16	N/A	unknown function
UniRef90	UHGV-0015413_22	UniRef90_UPI001C0FCFFA	362.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0015413_22	536232.CLM_2045	114.0	5.62e-27	Phage tail protein	N/A
COG	UHGV-0015413_22	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0015413_22	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_23	phrog_23464	250.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0015413_23	665950.HMPREF1025_02660	265.0	0	phage tail tape measure protein	N/A
COG	UHGV-0015413_23	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0015413_23	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_25	phrog_885	70.1	2.3e-20	major tail protein	tail
UniRef90	UHGV-0015413_25	UniRef90_A0A843J9F0	207.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0015413_25	1504822.CCNO01000012_gene492	231.0	0	N/A	N/A
structural_annotation	UHGV-0015413_25	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015413_26	PF11367	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015413_27	UniRef90_A0A285PT57	55.1	0.000000222	Phage head-tail joining protein	N/A
Pfam	UHGV-0015413_27	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0015413_27	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_29	phrog_212	256.9	0	major head protein	head and packaging
UniRef90	UHGV-0015413_29	UniRef90_A0A354MR33	501.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0015413_29	1232449.BAHV02000010_gene2714	339.0	0	N/A	N/A
structural_annotation	UHGV-0015413_29	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015413_30	UniRef90_A0A6B9SU02	84.7	4.34e-17	Fibronectin autolysin	N/A
structural_annotation	UHGV-0015413_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_31	phrog_35328	121.1	3.6e-36	N/A	unknown function
PHROG	UHGV-0015413_32	phrog_595	99.3	5.6e-29	head maturation protease	head and packaging
UniRef90	UHGV-0015413_32	UniRef90_A0A7X5E1T7	292.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0015413_32	1235792.C808_05364	173.0	4.2039e-45	Phage minor capsid protein 2	N/A
Pfam	UHGV-0015413_32	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0015413_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015413_32	PF04233,PF21814,TIGR01641,COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-0015413_33	UniRef90_A0A7X5E1T2	100.0	1.4e-24	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0015413_33	1158602.I590_02569	69.3	0.000000000000475	N/A	N/A
structural_annotation	UHGV-0015413_33	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_34	phrog_64	165.8	0	portal protein	head and packaging
UniRef90	UHGV-0015413_34	UniRef90_A0A856HZB4	534.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0015413_34	673376.F2VHW1_9CAUD	190.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0015413_34	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0015413_34	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0015413_35	K06909	126.7	2.2e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0015413_35	phrog_10250	184.2	0	N/A	unknown function
UniRef90	UHGV-0015413_35	UniRef90_UPI0002EF417D	455.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0015413_35	476272.RUMHYD_01756	341.0	0	N/A	N/A
Pfam	UHGV-0015413_35	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0015413_35	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0015413_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0015413_35	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0015413_36	K07474	103.9	2.8e-30	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0015413_36	phrog_51	111.7	5.2e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0015413_36	UniRef90_UPI001C8E62FA	129.0	1.31e-35	terminase small subunit	N/A
eggNOG-mapper	UHGV-0015413_36	1280692.AUJL01000027_gene2167	115.0	3.81e-31	Terminase small subunit	N/A
Pfam	UHGV-0015413_36	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0015413_36	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0015413_36	PF03592,COG3728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0015413_37	PF10922,MF_00839	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0015413_38	742738.HMPREF9460_02503	80.9	1.46e-18	N/A	N/A
structural_annotation	UHGV-0015413_38	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_40	phrog_3584	127.2	1.3e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0015413_40	536233.CLO_3655	63.9	0.0000000053	N/A	N/A
structural_annotation	UHGV-0015413_40	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_43	phrog_24518	70.3	2.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0015413_43	1519439.JPJG01000077_gene922	86.3	4.1e-18	N/A	N/A
PHROG	UHGV-0015413_44	phrog_15609	191.0	0	N/A	unknown function
UniRef90	UHGV-0015413_44	UniRef90_A0A7G9WGA3	149.0	2.71e-38	N/A	N/A
eggNOG-mapper	UHGV-0015413_44	1378168.N510_01841	140.0	4.05e-35	N/A	N/A
Pfam	UHGV-0015413_44	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0015413_44	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0015413_44	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_45	phrog_8470	260.5	0	N/A	unknown function
UniRef90	UHGV-0015413_45	UniRef90_UPI001C1063FF	246.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0015413_45	1378168.N510_01842	216.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0015413_45	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0015413_45	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_46	phrog_38338	82.1	7e-24	N/A	unknown function
UniRef90	UHGV-0015413_46	UniRef90_UPI00137B3A8C	68.6	0.00000000000492	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0015413_46	693746.OBV_24020	101.0	3.02e-26	N/A	N/A
structural_annotation	UHGV-0015413_48	PF13384	N/A	N/A	N/A	N/A
KOfam	UHGV-0015413_50	K17080	73.6	1.6e-21	PHB1; prohibitin 1	N/A
PHROG	UHGV-0015413_50	phrog_200	168.7	0	lipoprotein	other
UniRef90	UHGV-0015413_50	UniRef90_A0A1Y3TPZ8	335.0	0	Membrane protease	N/A
eggNOG-mapper	UHGV-0015413_50	33035.JPJF01000066_gene3563	323.0	0	prohibitin homologues	N/A
Pfam	UHGV-0015413_50	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-0015413_50	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-0015413_50	PF01145,MF_01562,NF008181,COG0330	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_52	phrog_66	40.0	0.000000000095	excisionase and transcriptional regulator	integration and excision
UniRef90	UHGV-0015413_52	UniRef90_A0A2E6QFS4	51.6	0.000000576	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-0015413_52	1329516.JPST01000014_gene643	50.1	0.000000372	Helix-turn-helix domain	N/A
Pfam	UHGV-0015413_52	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0015413_52	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
KOfam	UHGV-0015413_56	K18830	61.6	1.6e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0015413_56	phrog_8	47.9	0.00000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0015413_56	UniRef90_E2ZIF0	103.0	8.12e-26	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0015413_56	748224.HMPREF9436_01444	103.0	1.36e-26	N/A	N/A
Pfam	UHGV-0015413_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0015413_56	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0015413_56	PF12844,MF_02017,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0015413_58	phrog_2320	43.4	0.00000000000071	N/A	unknown function
KOfam	UHGV-0015413_59	K07729	43.7	0.0000000000047	K07729; putative transcriptional regulator	N/A
Pfam	UHGV-0015413_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0015413_59	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0015413_59	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0015413_60	K14059	285.3	0	int; integrase	N/A
PHROG	UHGV-0015413_60	phrog_1	205.9	0	integrase	integration and excision
UniRef90	UHGV-0015413_60	UniRef90_UPI0019587C62	417.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0015413_60	693746.OBV_34810	331.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0015413_60	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0015413_60	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0015413_60	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0015413_60	PF00589,PF02920,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0015413	Yes	39,041	58	98	1