vOTU vOTU-078216

vOTU: vOTU-078216

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-078216
Number of genomes	5
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-02433 → vSUBGEN-33459 → vOTU-078216
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0178551
Biosample ID	N/A
Genome length (bp)	43,416 bps
CheckV completeness	99.90% (High-quality)
CDS count	73
CDS density	90.09%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	850	Host agreement	98.47
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0178551_1	phrog_4433	141.1	8.70066e-42	N/A	unknown function
eggNOG-mapper	UHGV-0178551_1	343509.SG1142	78.2	9.66e-16	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0178551_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0178551_1	NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_2	phrog_15946	76.3	2.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0178551_2	1041147.AUFB01000014_gene330	54.3	0.00000107	N/A	N/A
PHROG	UHGV-0178551_3	phrog_4652	91.6	1.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-0178551_3	397290.C810_01459	160.0	0	N/A	N/A
structural_annotation	UHGV-0178551_3	TIGR02582,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178551_7	PF16857,NF001981	N/A	N/A	N/A	N/A
KOfam	UHGV-0178551_8	K18830	59.8	5.3e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0178551_8	phrog_2967	44.8	0.0000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0178551_8	UniRef90_A0A844DFR0	238.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0178551_8	748224.HMPREF9436_01444	170.0	0	N/A	N/A
Pfam	UHGV-0178551_8	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0178551_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0178551_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178551_10	394503.Ccel_2974	106.0	1.94e-23	N/A	N/A
structural_annotation	UHGV-0178551_10	COG5342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0178551_13	UniRef90_A0A6N7TLT0	335.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0178551_13	266265.Bxe_A3948	51.6	0.00000183	Helix-turn-helix domain	N/A
Pfam	UHGV-0178551_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178551_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0178551_13	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0178551_14	K14059	147.7	1.30321e-43	int; integrase	N/A
PHROG	UHGV-0178551_14	phrog_1	185.0	0	integrase	integration and excision
UniRef90	UHGV-0178551_14	UniRef90_A0A174D176	524.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0178551_14	411471.SUBVAR_05137	258.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0178551_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0178551_14	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0178551_14	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178551_16	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_17	phrog_20016	197.6	0	N/A	unknown function
UniRef90	UHGV-0178551_17	UniRef90_A0A285PT46	211.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0178551_17	1226322.HMPREF1545_00077	177.0	0	N/A	N/A
structural_annotation	UHGV-0178551_17	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_18	phrog_16490	195.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0178551_18	397290.C810_01328	125.0	2.89e-31	N/A	N/A
PHROG	UHGV-0178551_19	phrog_22984	70.3	2.6e-20	N/A	unknown function
PHROG	UHGV-0178551_20	phrog_21718	88.8	6.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0178551_20	397290.C810_05210	79.7	1.14e-16	N/A	N/A
PHROG	UHGV-0178551_21	phrog_3754	94.8	8.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0178551_21	476272.RUMHYD_01764	150.0	1.4013e-45	N/A	N/A
KOfam	UHGV-0178551_23	K22299	44.2	0.0000000000037	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
Pfam	UHGV-0178551_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178551_23	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0178551_23	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178551_24	1160721.RBI_I00206	55.5	0.00000000349	N/A	N/A
Pfam	UHGV-0178551_24	PF09274	N/A	N/A	ParG	ParG
PHROG	UHGV-0178551_27	phrog_15303	117.6	5.3e-35	N/A	unknown function
Pfam	UHGV-0178551_27	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0178551_29	K07273	157.3	0	acm; lysozyme	N/A
PHROG	UHGV-0178551_29	phrog_291	120.2	2e-35	endolysin	lysis
UniRef90	UHGV-0178551_29	UniRef90_A0A564U0D3	339.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0178551_29	718252.FP2_04890	290.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0178551_29	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0178551_29	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0178551_29	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_30	phrog_1382	47.5	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0178551_32	748224.HMPREF9436_01407	195.0	0	COG NOG18825 non supervised orthologous group	N/A
UniRef90	UHGV-0178551_33	UniRef90_A0A412ZBV2	75.1	0.000000000000304	MtfA protein	N/A
eggNOG-mapper	UHGV-0178551_33	1120933.ATUY01000004_gene1010	69.7	0.00000000000599	N/A	N/A
structural_annotation	UHGV-0178551_33	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_36	phrog_3558	269.5	0	tail protein	tail
UniRef90	UHGV-0178551_36	UniRef90_A0A3E2U3C8	847.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0178551_36	411465.PEPMIC_00746	127.0	4.69e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-0178551_36	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0178551_36	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0178551_36	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0178551_36	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_37	phrog_9959	96.7	1.5e-28	tail length tape measure protein	tail
UniRef90	UHGV-0178551_37	UniRef90_A0A844DDD5	567.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0178551_37	663278.Ethha_0487	160.0	5.3e-37	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0178551_37	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0178551_37	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0178551_37	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0178551_37	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_39	phrog_885	67.1	2.2e-19	major tail protein	tail
eggNOG-mapper	UHGV-0178551_39	1111121.HMPREF1247_0789	159.0	0	N/A	N/A
structural_annotation	UHGV-0178551_39	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178551_40	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_41	phrog_17977	44.6	0.0000000000022	N/A	unknown function
UniRef90	UHGV-0178551_41	UniRef90_A0A844DHJ8	121.0	4.02e-33	Phage head closure protein	N/A
structural_annotation	UHGV-0178551_41	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_43	phrog_544	154.1	1.4013e-45	major head protein	head and packaging
UniRef90	UHGV-0178551_43	UniRef90_R0BKA1	457.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0178551_43	476272.RUMHYD_01776	340.0	0	N/A	N/A
structural_annotation	UHGV-0178551_43	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_46	phrog_5	49.0	0.00000000000015	tail completion or Neck1 protein	connector
UniRef90	UHGV-0178551_46	UniRef90_A0A6N7TNP6	298.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0178551_46	1123309.AQYB01000018_gene814	91.7	1.12e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0178551_46	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0178551_46	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_48	phrog_8680	201.9	0	N/A	unknown function
UniRef90	UHGV-0178551_48	UniRef90_A0A844D688	456.0	0	N/A	N/A
eggNOG-mapper	UHGV-0178551_48	1423790.BN53_04265	182.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0178551_48	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0178551_48	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0178551_48	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_50	phrog_2468	80.7	1.2e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0178551_50	UniRef90_A0A6N7TLR7	597.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0178551_50	1504822.CCNO01000013_gene286	107.0	9.76e-23	cell adhesion	N/A
Pfam	UHGV-0178551_50	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0178551_50	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178551_50	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_52	phrog_64	123.8	6.1e-37	portal protein	head and packaging
UniRef90	UHGV-0178551_52	UniRef90_A0A6N7TNT3	882.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0178551_52	642492.Clole_2764	81.6	0.0000000000000979	phage portal protein, SPP1	N/A
Pfam	UHGV-0178551_52	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0178551_52	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0178551_53	K06909	142.5	3.89981e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0178551_53	phrog_10250	175.9	0	N/A	unknown function
UniRef90	UHGV-0178551_53	UniRef90_A0A844D8I4	845.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0178551_53	411490.ANACAC_00783	493.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0178551_53	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0178551_53	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0178551_53	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0178551_53	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0178551_53	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0178551_54	UniRef90_UPI0018CC2891	112.0	6.48e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0178551_54	1235790.C805_00037	114.0	4.42e-30	N/A	N/A
structural_annotation	UHGV-0178551_54	PF04218	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178551_56	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0178551_58	K01160	58.8	1.7e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0178551_58	phrog_34	59.7	6.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178551_58	UniRef90_A0A6N7TND6	219.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0178551_58	875454.BAEW01000002_gene491	132.0	1.94e-38	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0178551_58	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0178551_58	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0178551_58	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_59	phrog_3136	111.8	2.8e-33	N/A	unknown function
UniRef90	UHGV-0178551_59	UniRef90_A0A6N7TMC2	167.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0178551_59	1235793.C809_02645	56.2	0.000000744	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0178551_59	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0178551_59	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_61	phrog_757	181.9	0	DNA methyltransferase	other
UniRef90	UHGV-0178551_61	UniRef90_A0A417JTT5	297.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0178551_61	1095750.HMPREF9970_0173	228.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0178551_61	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0178551_61	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178551_63	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_64	phrog_15768	128.2	7.2e-38	N/A	unknown function
UniRef90	UHGV-0178551_64	UniRef90_A0A844D5V0	206.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0178551_64	748224.HMPREF9436_03357	140.0	5.05e-38	N/A	N/A
Pfam	UHGV-0178551_64	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0178551_64	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0178551_65	K03111	40.1	0.000000000075	ssb; single-strand DNA-binding protein	N/A
UniRef90	UHGV-0178551_65	UniRef90_UPI001CBB85F6	102.0	3.67e-24	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0178551_65	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_66	phrog_2760	185.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178551_66	UniRef90_A0A3A6EAW6	489.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0178551_66	1235794.C811_01355	149.0	1.99e-40	RecT family	N/A
Pfam	UHGV-0178551_66	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0178551_66	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0178551_66	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0178551_66	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_67	phrog_674	147.7	8.26766e-44	N/A	unknown function
UniRef90	UHGV-0178551_67	UniRef90_A0A3A6E846	485.0	0	N/A	N/A
eggNOG-mapper	UHGV-0178551_67	1121441.AUCX01000014_gene537	89.0	1.76e-17	N/A	N/A
Pfam	UHGV-0178551_67	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0178551_67	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178551_68	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178551_69	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178551_70	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178551_71	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0178551_73	phrog_27197	90.0	2.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0178551_73	394503.Ccel_3068	62.0	0.00000000032	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0178551_73	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0178551_73	NF007410	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0178551	Yes	43,416	55	100	1
UHGV-0179994	No	31,650	55	75	1
UHGV-0180286	No	27,159	56	64	1
UHGV-0180525	No	14,984	54	36	1
UHGV-0171995	No	11,958	55	28	1