vOTU vOTU-078256

vOTU: vOTU-078256

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-078256
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-01113 → vGENUS-02521 → vSUBGEN-32099 → vOTU-078256
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0005848
Biosample ID	N/A
Genome length (bp)	37,518 bps
CheckV completeness	90.79% (High-quality)
CDS count	53
CDS density	92.84%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	322	Host agreement	85.09
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	337	Host agreement	96.44

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0005848_1	phrog_87	63.1	3.7e-18	metallo-protease	other
UniRef90	UHGV-0005848_1	UniRef90_A0A416DGX8	99.0	6.36e-24	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0005848_1	428125.CLOLEP_02739	98.6	1.43e-24	N/A	N/A
COG	UHGV-0005848_1	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0005848_1	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_2	phrog_8	42.9	0.00000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0005848_2	UniRef90_A0A413K864	250.0	0	XRE family transcriptional regulator	N/A
COG	UHGV-0005848_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0005848_2	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0005848_3	97138.C820_00203	49.7	0.0000023	Transcriptional	N/A
COG	UHGV-0005848_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0005848_6	K15773	52.0	0.000000000000015	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0005848_6	phrog_3	49.4	0.0000000000002	transcriptional repressor	transcription regulation
UniRef90	UHGV-0005848_6	UniRef90_A0A374N3U7	128.0	1.27e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0005848_6	866536.Belba_0874	47.0	0.00000422	transcriptional regulator	N/A
Pfam	UHGV-0005848_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0005848_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0005848_6	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005848_8	UniRef90_A0A2N0ULT9	138.0	1.46996e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0005848_8	1283300.ATXB01000001_gene1737	46.2	0.00000684	DNA excision	N/A
Pfam	UHGV-0005848_8	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0005848_8	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0005848_8	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0005848_8	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_10	phrog_408	63.4	3.6e-18	N/A	unknown function
PHROG	UHGV-0005848_11	phrog_69	342.1	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005848_11	UniRef90_A0A412L7W2	769.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005848_11	1151292.QEW_2472	376.0	0	N/A	N/A
Pfam	UHGV-0005848_11	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0005848_11	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0005848_11	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_12	phrog_112	217.4	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005848_12	UniRef90_A0A412UNI7	360.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005848_12	573061.Clocel_0760	239.0	0	N/A	N/A
Pfam	UHGV-0005848_12	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0005848_12	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0005848_13	K02334	895.7	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0005848_13	phrog_17	411.0	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005848_13	UniRef90_A0A412UNJ8	1287.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0005848_13	1274524.BSONL12_06038	765.0	0	DNA polymerase A domain	N/A
Pfam	UHGV-0005848_13	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0005848_13	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0005848_13	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_14	phrog_256	1064.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005848_14	UniRef90_UPI001D06E26F	834.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0005848_14	536232.CLM_2670	817.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-0005848_14	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0005848_14	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0005848_14	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_15	phrog_93	82.4	5.7e-24	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005848_15	UniRef90_A0A412UNG8	189.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0005848_15	97138.C820_00219	107.0	5.44e-29	VRR-NUC domain-containing protein	N/A
Pfam	UHGV-0005848_15	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0005848_15	PF01870,MF_00130,NF002584,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0005848_16	K14440	79.3	1.1e-37	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0005848_16	phrog_62	411.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005848_16	UniRef90_A0A412L7W0	910.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0005848_16	97138.C820_00220	629.0	0	snf2 family	N/A
PADLOC	UHGV-0005848_16	ZorD1_00007	88.1	7.7e-26	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0005848_16	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0005848_16	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0005848_16	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0005848_16	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005848_18	PF19824,MF_01506	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005848_21	UniRef90_UPI000E4DC4DA	212.0	0	helix-turn-helix domain-containing protein	N/A
PHROG	UHGV-0005848_22	phrog_30343	171.4	0	N/A	unknown function
UniRef90	UHGV-0005848_22	UniRef90_UPI0019620485	93.2	4.79e-21	GNAT family N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0005848_22	411473.RUMCAL_00285	200.0	0	N/A	N/A
structural_annotation	UHGV-0005848_22	PF11039,MF_02210,TIGR03585,COG1670	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005848_24	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_25	phrog_309	138.2	2.09999e-41	terminase small subunit	head and packaging
UniRef90	UHGV-0005848_25	UniRef90_UPI001B3C9B19	230.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0005848_25	1121091.AUMP01000003_gene2580	141.0	2.42999e-41	transposase activity	N/A
Pfam	UHGV-0005848_25	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0005848_25	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0005848_25	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0005848_26	K06909	80.0	3.2e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0005848_26	phrog_2	85.4	1e-24	terminase large subunit	head and packaging
UniRef90	UHGV-0005848_26	UniRef90_UPI00189AB5B3	796.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0005848_26	1304866.K413DRAFT_3034	596.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0005848_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0005848_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0005848_26	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_27	phrog_533	321.9	0	portal protein	head and packaging
UniRef90	UHGV-0005848_27	UniRef90_A0A2N0ULU9	822.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0005848_27	1304866.K413DRAFT_3035	469.0	0	N/A	N/A
structural_annotation	UHGV-0005848_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_28	phrog_581	320.0	0	minor head protein	head and packaging
UniRef90	UHGV-0005848_28	UniRef90_A0A2N0ULU5	744.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-0005848_28	658655.HMPREF0988_02563	369.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0005848_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0005848_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005848_28	PF06152,PF15887,TIGR01641,COG4307	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_30	phrog_2616	48.6	0.00000000000018	N/A	unknown function
structural_annotation	UHGV-0005848_30	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_31	phrog_194	101.4	1.1e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0005848_31	UniRef90_A0A2N0ULW9	343.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0005848_31	742765.HMPREF9457_02126	174.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0005848_31	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0005848_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_32	phrog_422	228.3	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0005848_32	693746.OBV_18090	395.0	0	N/A	N/A
structural_annotation	UHGV-0005848_32	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_33	phrog_541	80.1	2.4e-23	head-tail adaptor	connector
UniRef90	UHGV-0005848_33	UniRef90_A0A371AQT0	108.0	3.9e-28	N/A	N/A
eggNOG-mapper	UHGV-0005848_33	1449050.JNLE01000003_gene3888	81.3	3.4e-18	N/A	N/A
PHROG	UHGV-0005848_34	phrog_3366	66.9	2.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0005848_34	1449050.JNLE01000003_gene3887	80.1	1.88e-17	N/A	N/A
Pfam	UHGV-0005848_34	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0005848_34	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_35	phrog_556	116.9	6.2e-35	minor head protein	head and packaging
UniRef90	UHGV-0005848_35	UniRef90_UPI00189BC4F9	178.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0005848_35	1449050.JNLE01000003_gene3886	174.0	0	N/A	N/A
Pfam	UHGV-0005848_35	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0005848_35	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_36	phrog_3266	104.4	7.5e-31	tail completion	connector
eggNOG-mapper	UHGV-0005848_36	1449050.JNLE01000003_gene3885	145.0	1.32002e-42	N/A	N/A
structural_annotation	UHGV-0005848_36	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_37	phrog_3099	148.8	2.38221e-44	N/A	unknown function
eggNOG-mapper	UHGV-0005848_37	1160721.RBI_II00532	237.0	0	N/A	N/A
structural_annotation	UHGV-0005848_37	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_38	phrog_11299	137.5	6.50006e-41	N/A	unknown function
eggNOG-mapper	UHGV-0005848_38	1298920.KI911353_gene2067	73.6	0.0000000000000136	N/A	N/A
structural_annotation	UHGV-0005848_38	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_39	phrog_706	138.8	3.30006e-41	N/A	unknown function
UniRef90	UHGV-0005848_39	UniRef90_A0A2N0ULW2	370.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0005848_39	1160721.RBI_II00530	211.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0005848_39	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0005848_39	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005848_41	UniRef90_UPI0013798457	69.7	0.0000000000000126	ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-0005848_41	1235793.C809_02220	66.6	0.0000000000000352	N/A	N/A
structural_annotation	UHGV-0005848_41	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0005848_43	K07741	91.0	3.3e-26	antB; anti-repressor protein	N/A
PHROG	UHGV-0005848_43	phrog_130	248.4	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0005848_43	UniRef90_UPI000B655685	347.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0005848_43	1289596.M1PKL6_9CAUD	306.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0005848_43	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0005848_43	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0005848_43	PF02498,PF03374,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_44	phrog_1535	500.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0005848_44	UniRef90_A0A2N0ULX3	1977.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0005848_44	476272.RUMHYD_01785	353.0	0	phage tail tape measure protein	N/A
COG	UHGV-0005848_44	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005848_44	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_45	phrog_1194	65.4	8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0005848_45	397290.C810_05238	92.4	4.09e-22	N/A	N/A
Pfam	UHGV-0005848_45	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0005848_45	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005848_46	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005848_47	UniRef90_A0A1C6HHE5	235.0	0	BppU_N domain-containing protein	N/A
structural_annotation	UHGV-0005848_47	PF08931	N/A	N/A	N/A	N/A
PHROG	UHGV-0005848_49	phrog_1863	70.6	1.8e-21	N/A	unknown function
UniRef90	UHGV-0005848_49	UniRef90_UPI001F223E8B	103.0	2.53e-27	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0005848_49	1226322.HMPREF1545_04027	75.1	7.65e-17	N/A	N/A
PHROG	UHGV-0005848_50	phrog_443	63.2	7.2e-18	holin	lysis
UniRef90	UHGV-0005848_50	UniRef90_R6R2Q3	87.4	2.6e-21	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0005848_50	626523.GCWU000342_01012	82.0	1.15e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0005848_50	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0005848_50	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0005848_51	K01448	57.6	2.1e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0005848_51	phrog_1794	85.2	1.1e-24	amidase	lysis
UniRef90	UHGV-0005848_51	UniRef90_A0A373KFY8	432.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0005848_51	1226322.HMPREF1545_03576	87.0	6.88e-17	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0005848_51	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0005848_51	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0005848_51	PF01520,PF18342,NF038140,COG0860,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-0005848_52	K07271	237.5	0	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	N/A
UniRef90	UHGV-0005848_52	UniRef90_A0A3D3D7N5	1242.0	0	Epimerase domain-containing protein	N/A
eggNOG-mapper	UHGV-0005848_52	697329.Rumal_2992	224.0	0	LicD family	N/A
Pfam	UHGV-0005848_52	PF01370	N/A	N/A	NAD dependent epimerase/dehydratase family	Epimerase
Pfam	UHGV-0005848_52	PF04991	N/A	N/A	LicD family	LicD
COG	UHGV-0005848_52	COG3475	N/A	N/A	Phosphorylcholine metabolism protein LicD	N/A
KOfam	UHGV-0005848_53	K08678	125.4	4.7e-37	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]	N/A
PHROG	UHGV-0005848_53	phrog_540	77.4	1.6e-22	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005848_53	UniRef90_A0A2N0UQV5	687.0	0	dTDP-glucose 4,6-dehydratase	N/A
eggNOG-mapper	UHGV-0005848_53	877411.JMMA01000002_gene2599	211.0	0	epimerase dehydratase	N/A
Pfam	UHGV-0005848_53	PF01370	N/A	N/A	NAD dependent epimerase/dehydratase family	Epimerase
COG	UHGV-0005848_53	COG0451	N/A	N/A	Nucleoside-diphosphate-sugar epimerase	N/A
structural_annotation	UHGV-0005848_53	PF16363,MF_01166,TIGR01181,COG0451	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0005848	Yes	37,518	42	91	1
UHGV-0019579	No	35,418	41	86	1
UHGV-2160327	No	14,195	41	33	1