vOTU vOTU-078257

vOTU: vOTU-078257

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-078257
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vSUBGEN-30893 → vOTU-078257
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0052207
Biosample ID	N/A
Genome length (bp)	33,031 bps
CheckV completeness	93.88% (High-quality)
CDS count	48
CDS density	92.06%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	2047	Host agreement	83.15
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii	Total connections	20	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0052207_1	1321372.AQQB01000002_gene484	47.8	0.00000216	N/A	N/A
KOfam	UHGV-0052207_2	K14059	102.1	8.8e-30	int; integrase	N/A
PHROG	UHGV-0052207_2	phrog_1	125.7	5.2e-37	integrase	integration and excision
UniRef90	UHGV-0052207_2	UniRef90_A0A1G5CL52	796.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0052207_2	693746.OBV_41260	190.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0052207_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0052207_2	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0052207_2	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0052207_3	UniRef90_UPI000E52DA24	398.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-0052207_3	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-0052207_3	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_4	phrog_1914	151.6	4.2039e-45	N/A	unknown function
UniRef90	UHGV-0052207_4	UniRef90_A0A373XNL4	347.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0052207_4	1160721.RBI_I01604	172.0	0	N/A	N/A
Pfam	UHGV-0052207_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0052207_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0052207_4	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0052207_5	UniRef90_A0A373XLN2	155.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0052207_5	1235793.C809_00679	58.5	0.00000000353	Helix-turn-helix XRE-family like proteins	N/A
structural_annotation	UHGV-0052207_5	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0052207_6	UniRef90_A0A374DVN3	161.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0052207_6	1219626.HMPREF1639_07045	47.8	0.00000322	N/A	N/A
UniRef90	UHGV-0052207_10	UniRef90_UPI000E4DC4DA	133.0	4.66e-37	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0052207_10	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_13	phrog_2118	117.0	1.9e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0052207_13	UniRef90_A0A373KMT6	207.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0052207_13	610130.Closa_0730	171.0	0	HNH endonuclease	N/A
Pfam	UHGV-0052207_13	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0052207_13	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0052207_13	COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_14	phrog_8684	96.8	8.8e-29	N/A	unknown function
UniRef90	UHGV-0052207_14	UniRef90_UPI000E48855B	221.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0052207_14	1450694.BTS2_0501	73.6	0.00000000000000496	YopX protein	N/A
Pfam	UHGV-0052207_14	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0052207_14	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_15	phrog_6058	41.2	0.000000000018	N/A	unknown function
structural_annotation	UHGV-0052207_15	NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0052207_16	COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-0052207_20	K03497	156.3	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0052207_20	phrog_6218	246.5	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0052207_20	UniRef90_UPI000E47CAB6	621.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0052207_20	1160721.RBI_I01596	221.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0052207_20	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0052207_20	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0052207_20	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
KOfam	UHGV-0052207_21	K03427	214.9	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0052207_21	phrog_6380	396.0	0	DNA methyltransferase	other
UniRef90	UHGV-0052207_21	UniRef90_A0A356CYE0	807.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0052207_21	1201292.DR75_1654	332.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0052207_21	MTase_I_00005	239.9	0	Type I methyltransferase	RM
Pfam	UHGV-0052207_21	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0052207_21	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0052207_21	PF02384,PF01420,MF_01872,TIGR00497,COG0286,COG0732	N/A	N/A	N/A	N/A
KOfam	UHGV-0052207_22	K18830	53.8	0.0000000000000051	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0052207_22	phrog_8	58.2	2.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0052207_22	UniRef90_A0A374N9T4	100.0	8.23e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0052207_22	525254.HMPREF0072_2111	70.1	0.000000000000013	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0052207_22	retron_type_VI_hth_cluster2_1	42.5	0.000000000018	N/A	Retron
Pfam	UHGV-0052207_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0052207_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0052207_22	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_23	phrog_24518	85.1	8.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0052207_23	1519439.JPJG01000077_gene922	112.0	1.72e-28	N/A	N/A
PHROG	UHGV-0052207_24	phrog_824	143.8	5.60519e-43	N/A	unknown function
UniRef90	UHGV-0052207_24	UniRef90_A0A3D3D6C6	240.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0052207_24	397288.C806_00096	155.0	0	VRR_NUC	N/A
Pfam	UHGV-0052207_24	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0052207_24	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_26	phrog_2118	118.8	4.8e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0052207_26	UniRef90_A0A374DVG7	218.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0052207_26	610130.Closa_0730	147.0	1.96182e-44	HNH endonuclease	N/A
Pfam	UHGV-0052207_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0052207_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0052207_26	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_28	phrog_2999	44.6	0.0000000000032	N/A	unknown function
PHROG	UHGV-0052207_30	phrog_3584	143.0	2.10055e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0052207_30	1235800.C819_00515	72.0	0.00000000000374	N/A	N/A
structural_annotation	UHGV-0052207_30	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0052207_31	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_32	phrog_119	69.9	3.8e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0052207_32	UniRef90_A0A412ULY9	223.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0052207_32	1158607.UAU_01026	102.0	5.07e-27	HNH endonuclease	N/A
Pfam	UHGV-0052207_32	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0052207_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0052207_33	phrog_5110	83.8	1.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0052207_33	UniRef90_A0A4U7JDP0	114.0	8.67e-31	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0052207_33	1211817.CCAT010000053_gene2128	100.0	4.45e-26	N/A	N/A
Pfam	UHGV-0052207_33	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0052207_33	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_34	phrog_9	294.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0052207_34	UniRef90_A0A412UM03	1091.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0052207_34	86416.Clopa_0337	642.0	0	Phage Terminase	N/A
Pfam	UHGV-0052207_34	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0052207_34	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0052207_34	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0052207_34	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
KOfam	UHGV-0052207_35	K07319	166.5	0	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0052207_35	phrog_498	108.7	6.8e-32	DNA methyltransferase	other
UniRef90	UHGV-0052207_35	UniRef90_A0A412UM21	388.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0052207_35	1226322.HMPREF1545_02860	163.0	0	N/A	N/A
PADLOC	UHGV-0052207_35	MTase_II_00157	139.3	3.00018e-42	Type II methyltransferase	RM
Pfam	UHGV-0052207_35	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0052207_35	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0052207_35	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_36	phrog_12	101.2	8.7e-30	portal protein	head and packaging
UniRef90	UHGV-0052207_36	UniRef90_A0A412ULV9	742.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0052207_36	1415774.U728_1254	259.0	0	Phage portal protein	N/A
Pfam	UHGV-0052207_36	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0052207_36	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0052207_36	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0052207_36	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0052207_37	K01358	136.8	2.2e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0052207_37	phrog_94	205.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0052207_37	UniRef90_A0A412ULU1	473.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0052207_37	86416.Clopa_0340	178.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0052207_37	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0052207_37	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0052207_37	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_38	phrog_10	126.8	2.1e-37	major head protein	head and packaging
UniRef90	UHGV-0052207_38	UniRef90_A0A412ULW9	735.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0052207_38	1211817.CCAT010000053_gene2132	318.0	0	Phage capsid family	N/A
Pfam	UHGV-0052207_38	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0052207_38	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0052207_38	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0052207_38	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_39	phrog_749	54.9	0.0000000000000014	N/A	unknown function
UniRef90	UHGV-0052207_39	UniRef90_A0A1G5CMX8	105.0	1.75e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0052207_39	1415774.U728_1251	50.1	0.00000184	N/A	N/A
PHROG	UHGV-0052207_40	phrog_19734	73.8	2.1e-21	N/A	unknown function
UniRef90	UHGV-0052207_40	UniRef90_UPI00057FE645	59.7	0.00000000312	phage head closure protein	N/A
eggNOG-mapper	UHGV-0052207_40	86416.Clopa_0343	61.6	0.000000000113	N/A	N/A
NCBIFam	UHGV-0052207_40	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0052207_40	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0052207_41	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0052207_42	UniRef90_UPI000E5564A4	271.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0052207_42	1235792.C808_00089	53.9	0.000000296	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0052207_42	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0052207_42	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_43	phrog_88	72.4	6.3e-21	major tail protein	tail
UniRef90	UHGV-0052207_43	UniRef90_A0A1G5CNS8	151.0	9.23456e-43	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0052207_43	1321782.HMPREF1986_01362	65.9	0.000000000137	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0052207_43	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0052207_43	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0052207_44	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0052207_45	K20283	59.1	9.9e-18	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0052207_45	phrog_1272	261.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0052207_45	UniRef90_A0A412ULX0	1549.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0052207_45	588581.Cpap_1264	201.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0052207_45	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0052207_45	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0052207_45	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_46	phrog_33	70.9	3.1e-20	distal tail protein Dit	tail
UniRef90	UHGV-0052207_46	UniRef90_R6GVG8	75.5	0.00000000000133	Phage putative tail component N-domain protein	N/A
eggNOG-mapper	UHGV-0052207_46	1160721.RBI_I01575	84.0	1.83e-16	Phage tail protein	N/A
COG	UHGV-0052207_46	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0052207_46	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0052207_47	phrog_1067	100.7	1.6e-29	minor head protein	head and packaging
UniRef90	UHGV-0052207_47	UniRef90_A0A1G5CPD2	136.0	6.68e-33	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0052207_47	1462527.CCDM010000003_gene3730	72.4	0.0000000000902	gp58-like protein	N/A
COG	UHGV-0052207_47	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0052207_47	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0052207	Yes	33,031	39	94	1
UHGV-1422428	No	33,031	39	94	1
UHGV-1400581	No	32,656	39	93	1
UHGV-1883126	No	28,709	39	82	1