vOTU vOTU-078313

vOTU: vOTU-078313

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-078313
Number of genomes	9
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00160 → vGENUS-00101 → vSUBGEN-22982 → vOTU-078313
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0106700
Biosample ID	SAMEA3708828
Genome length (bp)	43,913 bps
CheckV completeness	99.90% (High-quality)
CDS count	59
CDS density	91.99%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	232	Host agreement	79.31
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	54	Host agreement	77.78

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0106700_3	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0106700_6	UniRef90_A0A8D9PDQ3	76.6	6.14e-17	ECF sigma factor	N/A
structural_annotation	UHGV-0106700_6	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0106700_7	K01447	116.6	3e-34	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0106700_7	phrog_670	124.8	8.8e-37	endolysin	lysis
UniRef90	UHGV-0106700_7	UniRef90_A0A3D4D877	412.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0106700_7	1519439.JPJG01000060_gene1899	406.0	0	Ami_2	N/A
Pfam	UHGV-0106700_7	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0106700_7	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0106700_7	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_8	phrog_13256	61.9	7.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0106700_8	1226322.HMPREF1545_00166	72.8	4.34e-16	N/A	N/A
PHROG	UHGV-0106700_10	phrog_937	44.9	0.0000000000023	hemolysin	other
eggNOG-mapper	UHGV-0106700_10	1519439.JPJG01000023_gene533	72.8	0.00000000000000191	N/A	N/A
PHROG	UHGV-0106700_11	phrog_22978	350.0	0	N/A	unknown function
UniRef90	UHGV-0106700_11	UniRef90_A0A3D4D8G0	931.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0106700_11	1519439.JPJG01000060_gene1905	1531.0	0	N/A	N/A
Pfam	UHGV-0106700_11	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
eggNOG-mapper	UHGV-0106700_12	1203606.HMPREF1526_02741	108.0	7e-24	N/A	N/A
PHROG	UHGV-0106700_13	phrog_511	187.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0106700_13	1226322.HMPREF1545_00785	442.0	0	N/A	N/A
structural_annotation	UHGV-0106700_13	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0106700_15	PF18707,NF041740,COG5501	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0106700_16	1226322.HMPREF1545_00783	84.3	0.00000000000000173	Chaperone of endosialidase	N/A
structural_annotation	UHGV-0106700_16	PF07902,NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_17	phrog_12105	57.4	2.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0106700_17	1519439.JPJG01000060_gene1891	54.3	0.000000111	N/A	N/A
PHROG	UHGV-0106700_18	phrog_27545	139.9	9.30042e-42	N/A	unknown function
UniRef90	UHGV-0106700_18	UniRef90_A0A2V2GQB6	137.0	3.75e-37	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0106700_18	1519439.JPJG01000060_gene1895	450.0	0	N/A	N/A
structural_annotation	UHGV-0106700_18	PF16170	N/A	N/A	N/A	N/A
KOfam	UHGV-0106700_20	K16628	162.2	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0106700_20	phrog_819	98.4	0	tail protein	tail
UniRef90	UHGV-0106700_20	UniRef90_UPI00068BE71D	581.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0106700_20	1519439.JPJG01000060_gene1892	581.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0106700_20	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0106700_20	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0106700_20	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_21	phrog_15239	77.2	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0106700_21	1449126.JQKL01000003_gene1694	52.0	0.000000461	N/A	N/A
PHROG	UHGV-0106700_22	phrog_1357	254.1	0	major head protein	head and packaging
UniRef90	UHGV-0106700_22	UniRef90_A0A8D9UH64	497.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0106700_22	1449126.JQKL01000003_gene1695	455.0	0	N/A	N/A
Pfam	UHGV-0106700_22	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0106700_22	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0106700_22	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_23	phrog_13908	258.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0106700_23	1410650.JHWL01000003_gene2831	98.6	1.1e-20	N/A	N/A
structural_annotation	UHGV-0106700_24	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_25	phrog_156	318.5	0	portal protein	head and packaging
UniRef90	UHGV-0106700_25	UniRef90_A0A8D9UH10	676.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0106700_25	748224.HMPREF9436_01396	478.0	0	N/A	N/A
structural_annotation	UHGV-0106700_25	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0106700_26	K06909	104.0	1.9e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0106700_26	phrog_979	156.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0106700_26	UniRef90_A0A1Y4WJ48	708.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0106700_26	748224.HMPREF9436_01395	570.0	0	Terminase-like family	N/A
Pfam	UHGV-0106700_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0106700_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0106700_26	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_27	phrog_606	81.3	1.2e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0106700_27	UniRef90_UPI00195648BB	171.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0106700_27	397290.C810_05185	148.0	2.17201e-43	DNA-packaging protein gp3	N/A
Pfam	UHGV-0106700_27	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0106700_27	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_28	phrog_38832	60.2	3.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-0106700_28	665956.HMPREF1032_03087	62.4	0.0000000000735	N/A	N/A
UniRef90	UHGV-0106700_29	UniRef90_UPI0012AD39DD	60.5	0.000000109	leucine-rich repeat protein	N/A
UniRef90	UHGV-0106700_30	UniRef90_A0A098GES5	89.7	2.21e-21	Putative phage associated protein	N/A
structural_annotation	UHGV-0106700_30	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
KOfam	UHGV-0106700_33	K00558	169.8	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0106700_33	phrog_116	193.8	0	DNA methyltransferase	other
UniRef90	UHGV-0106700_33	UniRef90_D4JYK0	376.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0106700_33	718252.FP2_16350	376.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0106700_33	oMTase_00004	198.7	0	orphan methyltransferase	RM
Pfam	UHGV-0106700_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0106700_33	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0106700_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
Pfam	UHGV-0106700_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0106700_34	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0106700_35	K23779	59.6	1.4e-31	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0106700_35	phrog_8	83.1	2.3e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0106700_35	UniRef90_UPI00115BCC30	72.4	0.000000000000317	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0106700_35	460265.Mnod_5702	57.0	0.0000000183	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0106700_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0106700_35	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0106700_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0106700_35	PF01381,PF13744,NF041951,COG3655,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_37	phrog_190	117.1	1.3e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0106700_37	UniRef90_UPI001C0170D2	112.0	1.37e-28	N/A	N/A
eggNOG-mapper	UHGV-0106700_37	1226322.HMPREF1545_00295	130.0	1.21e-36	N/A	N/A
Pfam	UHGV-0106700_37	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0106700_37	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0106700_38	PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_41	phrog_9804	49.6	0.000000000000049	N/A	unknown function
UniRef90	UHGV-0106700_41	UniRef90_A0A8D9PDS1	85.5	7.37e-19	Replisome organizer	N/A
eggNOG-mapper	UHGV-0106700_41	1121344.JHZO01000003_gene981	69.7	0.000000000000561	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0106700_41	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0106700_41	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_42	phrog_15768	53.9	0.0000000000000046	N/A	unknown function
eggNOG-mapper	UHGV-0106700_42	1123489.AUAN01000002_gene671	63.5	0.0000000000723	DnaD domain protein	N/A
COG	UHGV-0106700_42	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0106700_44	K03111	112.5	6.5e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0106700_44	phrog_44	112.8	3.8e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0106700_44	UniRef90_G4L1H2	135.0	1.34e-38	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0106700_44	1007096.BAGW01000007_gene1922	135.0	2.94e-39	Single-strand binding protein family	N/A
Pfam	UHGV-0106700_44	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0106700_44	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0106700_44	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0106700_44	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0106700_44	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0106700_45	K07455	162.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0106700_45	phrog_148	169.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0106700_45	UniRef90_UPI0018C50A8E	327.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0106700_45	1196028.ALEF01000043_gene487	218.0	0	RecT family	N/A
Pfam	UHGV-0106700_45	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0106700_45	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0106700_45	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0106700_45	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_46	phrog_434	284.4	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0106700_46	UniRef90_U2SK35	414.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0106700_46	1226322.HMPREF1545_00014	414.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0106700_46	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0106700_46	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0106700_46	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0106700_46	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0106700_50	693746.OBV_43260	62.4	0.00000000000362	N/A	N/A
structural_annotation	UHGV-0106700_50	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0106700_52	K07741	227.3	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0106700_52	phrog_63	183.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0106700_52	UniRef90_UPI001379CF69	347.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0106700_52	1232443.BAIA02000079_gene53	340.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0106700_52	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0106700_52	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0106700_52	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0106700_52	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-0106700_53	UniRef90_A0A8D9PDN2	83.2	1.22e-19	DNA-binding protein	N/A
Pfam	UHGV-0106700_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0106700_53	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0106700_54	phrog_8	42.2	0.000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0106700_54	UniRef90_UPI001E54DE4F	70.9	0.00000000000012	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0106700_54	1378168.N510_01712	68.9	0.00000000000172	N/A	N/A
Pfam	UHGV-0106700_54	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0106700_54	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0106700_55	UniRef90_UPI001BB4762F	117.0	3.85e-27	DnaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0106700_55	715451.ambt_14505	89.4	1.53e-17	N/A	N/A
UniRef90	UHGV-0106700_56	UniRef90_R5HRH2	52.4	0.00000596	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0106700_56	537007.BLAHAN_06565	49.3	0.00000546	sequence-specific DNA binding	N/A
Pfam	UHGV-0106700_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0106700_56	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0106700_56	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0106700_57	K14059	131.6	1.1e-38	int; integrase	N/A
PHROG	UHGV-0106700_57	phrog_1	142.3	4.30058e-42	integrase	integration and excision
UniRef90	UHGV-0106700_57	UniRef90_G4L0W3	394.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0106700_57	693746.OBV_43340	394.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0106700_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0106700_57	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0106700_57	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0106700_59	UniRef90_R4KGU4	167.0	0	C4-dicarboxylate anaerobic carrier	N/A
eggNOG-mapper	UHGV-0106700_59	411462.DORLON_01116	264.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0106700	Yes	43,913	57	100	1
UHGV-0114766	No	35,569	58	82	1
UHGV-0108469	No	32,290	56	75	1
UHGV-1438701	No	32,290	56	75	1
UHGV-1526662	No	29,015	58	67	1
UHGV-0112362	No	27,024	58	63	1
UHGV-1467151	No	22,762	56	53	1
UHGV-2164743	No	12,081	54	28	1
UHGV-1778701	No	10,015	60	23	1