vOTU vOTU-078548

vOTU: vOTU-078548

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-078548
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00061 → vGENUS-00150 → vSUBGEN-00290 → vOTU-078548
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella atypica
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0174140
Biosample ID	SAMN07501325
Genome length (bp)	41,354 bps
CheckV completeness	99.90% (High-quality)
CDS count	59
CDS density	95.87%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella atypica	Total connections	77	Host agreement	77.92
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0174140_2	phrog_10797	221.8	0	N/A	unknown function
UniRef90	UHGV-0174140_2	UniRef90_A0A1B3X2S2	135.0	1.75e-36	Glycoprotease	N/A
eggNOG-mapper	UHGV-0174140_2	883156.HMPREF9282_01266	152.0	2.52234e-44	N/A	N/A
structural_annotation	UHGV-0174140_2	PF06531	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_3	phrog_34863	53.2	0.000000000000002	N/A	unknown function
UniRef90	UHGV-0174140_3	UniRef90_UPI001D017339	155.0	1.03696e-43	chitosanase	N/A
eggNOG-mapper	UHGV-0174140_3	546273.VEIDISOL_01083	236.0	0	LysM domain	N/A
Pfam	UHGV-0174140_3	PF21277	N/A	N/A	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
COG	UHGV-0174140_3	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0174140_3	PF21277	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0174140_4	568816.Acin_1951	51.6	0.000000034	N/A	N/A
PHROG	UHGV-0174140_5	phrog_23091	215.6	0	N/A	unknown function
structural_annotation	UHGV-0174140_5	PF05105,NF035928	N/A	N/A	N/A	N/A
KOfam	UHGV-0174140_7	K13925	40.6	0.0000000000097	pfbA; plasmin and fibronectin-binding protein A	N/A
UniRef90	UHGV-0174140_7	UniRef90_A0A2S7ZGN5	1230.0	0	Pectate_lyase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0174140_7	1443111.JASG01000004_gene3704	61.6	0.000000925	Pectate lyase superfamily protein	N/A
Pfam	UHGV-0174140_7	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-0174140_7	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-0174140_7	PF05096,PF03906,MF_03008,TIGR03866,COG3204	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_8	phrog_9880	256.7	0	N/A	unknown function
UniRef90	UHGV-0174140_8	UniRef90_A0A239Z8B8	2756.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0174140_8	699218.HMPREF0889_0277	460.0	0	N/A	N/A
Pfam	UHGV-0174140_8	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0174140_8	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
structural_annotation	UHGV-0174140_9	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_10	phrog_418	73.3	2.9e-21	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0174140_10	1401067.HMPREF0872_06765	174.0	0	N/A	N/A
structural_annotation	UHGV-0174140_10	PF05384,TIGR01010,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_11	phrog_308	72.5	5.8e-21	internal virion protein	head and packaging
UniRef90	UHGV-0174140_11	UniRef90_UPI001D08FF44	330.0	0	N/A	N/A
Pfam	UHGV-0174140_11	PF11090	N/A	N/A	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
structural_annotation	UHGV-0174140_11	PF11039,MF_02210,NF000165,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_12	phrog_376	642.9	0	tail protein	tail
UniRef90	UHGV-0174140_12	UniRef90_A0A3A4JUE0	325.0	0	E1_FCCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0174140_12	1401067.HMPREF0872_06775	647.0	0	N/A	N/A
structural_annotation	UHGV-0174140_12	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_13	phrog_394	167.5	0	tail protein	tail
eggNOG-mapper	UHGV-0174140_13	1401067.HMPREF0872_06780	212.0	0	N/A	N/A
structural_annotation	UHGV-0174140_13	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_15	phrog_427	41.9	0.000000000017	N/A	unknown function
structural_annotation	UHGV-0174140_15	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_16	phrog_212	233.4	0	major head protein	head and packaging
UniRef90	UHGV-0174140_16	UniRef90_A0A239Z8I8	607.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0174140_16	1401067.HMPREF0872_06795	370.0	0	N/A	N/A
Pfam	UHGV-0174140_16	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0174140_16	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_17	phrog_458	88.7	9e-26	protease	other
eggNOG-mapper	UHGV-0174140_17	1401067.HMPREF0872_06800	117.0	3.29e-30	N/A	N/A
PHROG	UHGV-0174140_18	phrog_528	70.0	1.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0174140_18	568816.Acin_1833	63.5	0.0000000000151	N/A	N/A
PHROG	UHGV-0174140_19	phrog_332	413.3	0	head-tail adaptor	connector
UniRef90	UHGV-0174140_19	UniRef90_UPI001D07F371	919.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0174140_19	1401067.HMPREF0872_06810	525.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0174140_19	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0174140_19	PF12236,MF_04120,TIGR01538	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_22	phrog_5902	253.6	0	N/A	unknown function
UniRef90	UHGV-0174140_22	UniRef90_UPI0018A6EFE4	585.0	0	terminase	N/A
eggNOG-mapper	UHGV-0174140_22	1200557.JHWV01000001_gene277	588.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0174140_22	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0174140_22	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0174140_23	K07474	128.8	7.5e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0174140_23	phrog_51	133.1	1.3e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0174140_23	UniRef90_A0A239Z9J1	252.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0174140_23	1280689.AUJC01000003_gene961	115.0	3.64e-31	Terminase small subunit	N/A
Pfam	UHGV-0174140_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0174140_23	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0174140_23	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_25	phrog_36	48.8	0.00000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0174140_25	UniRef90_D1YMC4	85.9	1.87e-18	Phage transcriptional regulator, ArpU family	N/A
eggNOG-mapper	UHGV-0174140_25	706434.HMPREF9429_00383	51.2	0.00000482	N/A	N/A
structural_annotation	UHGV-0174140_25	PF07374,TIGR02984	N/A	N/A	N/A	N/A
KOfam	UHGV-0174140_32	K19232	119.3	1.1e-39	btaE; hyaluronate-binding autotransporter adhesin	N/A
UniRef90	UHGV-0174140_32	UniRef90_UPI001D068F5F	429.0	0	YadA-like family protein	N/A
eggNOG-mapper	UHGV-0174140_32	1128111.HMPREF0870_01786	165.0	1.62551e-43	Hep Hag repeat protein	N/A
Pfam	UHGV-0174140_32	PF05658	N/A	N/A	YadA head domain repeat (2 copies)	YadA_head
Pfam	UHGV-0174140_32	PF05662	N/A	N/A	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
Pfam	UHGV-0174140_32	PF03895	N/A	N/A	YadA-like membrane anchor domain	YadA_anchor
COG	UHGV-0174140_32	COG5295	N/A	N/A	Autotransporter adhesin	N/A
structural_annotation	UHGV-0174140_32	PF03895,NF033478,COG5295	N/A	N/A	N/A	N/A
KOfam	UHGV-0174140_33	K01520	154.4	1.4013e-45	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0174140_33	phrog_135	150.3	7.00649e-45	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174140_33	UniRef90_UPI001D0616FF	251.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0174140_33	36080.S2JYN8	122.0	6.53e-34	dUTPase	N/A
Pfam	UHGV-0174140_33	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0174140_33	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0174140_33	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0174140_33	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0174140_34	PF13384,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_35	phrog_244	79.0	7.7e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174140_35	UniRef90_A0A841R0Q1	153.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0174140_35	1123250.KB908417_gene653	139.0	3.64996e-41	N/A	N/A
structural_annotation	UHGV-0174140_35	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_38	phrog_1672	49.9	0.000000000000047	N/A	unknown function
UniRef90	UHGV-0174140_38	UniRef90_F5L204	111.0	7.68e-29	Conserved domain protein	N/A
KOfam	UHGV-0174140_40	K03111	145.5	5.29691e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0174140_40	phrog_44	124.1	1.1e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174140_40	UniRef90_UPI000750C286	230.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0174140_40	936589.HMPREF1521_1228	201.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0174140_40	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0174140_40	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0174140_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0174140_40	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0174140_40	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_43	phrog_9804	71.5	1.3e-20	N/A	unknown function
structural_annotation	UHGV-0174140_43	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0174140_44	K02315	40.1	0.000000000043	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0174140_44	phrog_5968	168.8	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174140_44	UniRef90_A0A2S7ZGS0	374.0	0	Replisome organizer	N/A
eggNOG-mapper	UHGV-0174140_44	411473.RUMCAL_00873	167.0	0	Phage replisome organizer, N-terminal domain protein	N/A
Pfam	UHGV-0174140_44	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0174140_44	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0174140_44	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0174140_44	PF09681,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0174140_46	K07451	41.0	0.000000000032	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0174140_46	phrog_22514	45.5	0.0000000000016	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174140_46	UniRef90_UPI001D06BA3D	106.0	5.1e-28	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0174140_46	323259.Mhun_1686	56.6	0.000000012	COG1403 Restriction endonuclease	N/A
Pfam	UHGV-0174140_46	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0174140_46	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0174140_46	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_47	phrog_72	61.7	1.1e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174140_47	UniRef90_R5BGH3	129.0	1.4e-34	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0174140_47	1399942.U3PCT8_9CAUD	85.5	2.44e-18	N/A	N/A
PHROG	UHGV-0174140_48	phrog_7838	115.0	5.3e-34	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0174140_48	UniRef90_UPI001D07B780	428.0	0	RAD52 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0174140_48	1485543.JMME01000021_gene803	116.0	4.23e-30	N/A	N/A
Pfam	UHGV-0174140_48	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
structural_annotation	UHGV-0174140_48	PF06420,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_49	phrog_674	86.3	1.3e-25	N/A	unknown function
UniRef90	UHGV-0174140_49	UniRef90_UPI001D090BA8	525.0	0	N/A	N/A
eggNOG-mapper	UHGV-0174140_49	1415775.U729_15	81.6	0.00000000000000465	N/A	N/A
Pfam	UHGV-0174140_49	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0174140_49	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0174140_51	NF008912	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_52	phrog_7735	84.7	8.6e-25	excisionase	integration and excision
UniRef90	UHGV-0174140_52	UniRef90_UPI00195FD229	118.0	1.33e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0174140_52	862517.HMPREF9225_0695	48.1	0.00000784	N/A	N/A
Pfam	UHGV-0174140_52	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0174140_52	PF12728,MF_01155,NF033787,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0174140_54	K07729	56.1	8.8e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0174140_54	phrog_8	48.7	0.00000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0174140_54	UniRef90_UPI001CB0AC39	131.0	1.02e-38	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0174140_54	650150.ERH_0585	70.5	0.00000000000000215	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0174140_54	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0174140_54	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0174140_55	K22299	60.7	3.4e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0174140_55	phrog_8	78.1	1.6e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0174140_55	UniRef90_UPI001D06F06D	216.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0174140_55	1111454.HMPREF1250_1028	110.0	7.25e-30	carbohydrate binding	N/A
PADLOC	UHGV-0174140_55	retron_type_VI_hth_cluster2_1	49.0	0.00000000000015	N/A	Retron
Pfam	UHGV-0174140_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0174140_55	COG2390	N/A	N/A	DNA-binding transcriptional regulator LsrR, DeoR family	N/A
structural_annotation	UHGV-0174140_55	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0174140_56	883156.HMPREF9282_00651	107.0	7.76e-27	N/A	N/A
structural_annotation	UHGV-0174140_56	PF16747	N/A	N/A	N/A	N/A
PHROG	UHGV-0174140_58	phrog_20936	110.1	9.8e-33	N/A	unknown function
UniRef90	UHGV-0174140_58	UniRef90_UPI001D086FA7	172.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0174140_58	706434.HMPREF9429_00182	58.9	0.000000000235	N/A	N/A
Pfam	UHGV-0174140_58	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0174140_58	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0174140_59	K14059	218.3	0	int; integrase	N/A
PHROG	UHGV-0174140_59	phrog_1	201.6	0	integrase	integration and excision
UniRef90	UHGV-0174140_59	UniRef90_UPI001D0692F2	683.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0174140_59	1232428.CAVO010000003_gene1025	265.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0174140_59	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0174140_59	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0174140_59	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0174140_59	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0174140_59	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0174140	Yes	41,354	37	100	1
UHGV-0373895	No	14,365	38	35	1