vOTU vOTU-078573

vOTU: vOTU-078573

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-078573
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00971 → vGENUS-04563 → vSUBGEN-02657 → vOTU-078573
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1360171
Biosample ID	N/A
Genome length (bp)	35,940 bps
CheckV completeness	92.15% (High-quality)
CDS count	53
CDS density	94.99%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	95	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	78	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1360171_1	phrog_38832	72.3	1.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-1360171_1	665956.HMPREF1032_00143	80.9	1.94e-17	N/A	N/A
PHROG	UHGV-1360171_2	phrog_424	122.4	4.1e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1360171_2	UniRef90_A0A8E3SID3	353.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1360171_2	903814.ELI_3131	316.0	0	sulfate reduction	N/A
PADLOC	UHGV-1360171_2	SspD_00001	46.2	0.0000000000015	SspD	SSP
COG	UHGV-1360171_2	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1360171_2	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360171_3	PF06257,NF011232	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1360171_4	665956.HMPREF1032_03084	66.6	0.000000000000171	N/A	N/A
structural_annotation	UHGV-1360171_8	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_9	phrog_2412	92.4	4e-27	N/A	unknown function
eggNOG-mapper	UHGV-1360171_9	742738.HMPREF9460_02504	125.0	9.65e-35	N/A	N/A
KOfam	UHGV-1360171_10	K06909	84.4	1.6e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1360171_10	phrog_2	114.2	1.9e-33	terminase large subunit	head and packaging
UniRef90	UHGV-1360171_10	UniRef90_UPI0019684892	852.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1360171_10	1449050.JNLE01000003_gene3895	384.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1360171_10	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1360171_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1360171_10	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_11	phrog_533	272.3	0	portal protein	head and packaging
UniRef90	UHGV-1360171_11	UniRef90_A0A7G9WF85	455.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1360171_11	718252.FP2_06700	479.0	0	N/A	N/A
structural_annotation	UHGV-1360171_11	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_12	phrog_581	342.7	0	minor head protein	head and packaging
UniRef90	UHGV-1360171_12	UniRef90_UPI0019678B21	976.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1360171_12	718252.FP2_06690	486.0	0	N/A	N/A
Pfam	UHGV-1360171_12	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1360171_12	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1360171_12	PF06152,PF12106	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_13	phrog_34144	53.4	0.0000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1360171_13	742742.HMPREF9452_00763	58.5	0.0000000000501	N/A	N/A
structural_annotation	UHGV-1360171_13	PF20111	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_14	phrog_194	108.4	7.6e-32	head scaffolding protein	head and packaging
UniRef90	UHGV-1360171_14	UniRef90_A0A410Q086	128.0	4.87e-34	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-1360171_14	411471.SUBVAR_06994	114.0	2.85e-29	Phage minor structural protein GP20	N/A
Pfam	UHGV-1360171_14	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1360171_14	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_15	phrog_267	85.6	5.8e-25	major head protein	head and packaging
UniRef90	UHGV-1360171_15	UniRef90_A0A4P8IA69	355.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-1360171_15	748224.HMPREF9436_03335	424.0	0	N/A	N/A
structural_annotation	UHGV-1360171_15	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_16	phrog_541	64.4	1.8e-18	head-tail adaptor	connector
Pfam	UHGV-1360171_17	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1360171_17	PF20536,COG1853	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_18	phrog_556	107.3	9.1e-32	minor head protein	head and packaging
UniRef90	UHGV-1360171_18	UniRef90_UPI001958E7C1	128.0	1.16e-35	minor capsid protein	N/A
eggNOG-mapper	UHGV-1360171_18	665956.HMPREF1032_03062	132.0	3.47e-38	Minor capsid protein	N/A
Pfam	UHGV-1360171_18	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1360171_18	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_19	phrog_3266	77.1	2e-22	tail completion	connector
eggNOG-mapper	UHGV-1360171_19	525255.HMPREF0077_0380	58.5	0.00000000609	N/A	N/A
structural_annotation	UHGV-1360171_19	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_20	phrog_3099	62.0	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1360171_20	665956.HMPREF1032_03060	293.0	0	N/A	N/A
structural_annotation	UHGV-1360171_20	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_21	phrog_11299	81.1	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-1360171_21	665956.HMPREF1032_03059	177.0	0	N/A	N/A
structural_annotation	UHGV-1360171_21	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_22	phrog_706	95.1	7.8e-28	N/A	unknown function
UniRef90	UHGV-1360171_22	UniRef90_UPI0013141117	223.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1360171_22	665956.HMPREF1032_03058	284.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1360171_22	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1360171_22	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_23	phrog_1535	116.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1360171_23	UniRef90_A0A1C6JAZ8	150.0	8.16e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-1360171_23	665956.HMPREF1032_03057	597.0	0	tape measure	N/A
COG	UHGV-1360171_23	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_24	phrog_1194	62.8	5.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-1360171_24	411902.CLOBOL_00125	105.0	1.57e-27	N/A	N/A
structural_annotation	UHGV-1360171_24	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_25	phrog_32744	164.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1360171_25	411902.CLOBOL_00124	241.0	0	N/A	N/A
structural_annotation	UHGV-1360171_25	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_26	phrog_18725	59.2	6.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-1360171_26	693746.OBV_18220	70.9	0.000000000000166	N/A	N/A
eggNOG-mapper	UHGV-1360171_27	665956.HMPREF1032_03918	87.4	1.85e-18	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
structural_annotation	UHGV-1360171_29	PF11514	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_30	phrog_11037	54.7	0.0000000000000015	N/A	unknown function
UniRef90	UHGV-1360171_30	UniRef90_A0A6I3QQJ9	538.0	0	Peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-1360171_30	665956.HMPREF1032_03271	243.0	0	N/A	N/A
structural_annotation	UHGV-1360171_30	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_31	phrog_1863	75.6	3.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-1360171_31	665956.HMPREF1032_02709	152.0	0	N/A	N/A
PHROG	UHGV-1360171_32	phrog_20258	136.4	5.29999e-41	N/A	unknown function
eggNOG-mapper	UHGV-1360171_32	665956.HMPREF1032_02710	188.0	0	N/A	N/A
KOfam	UHGV-1360171_33	K06400	322.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1360171_33	phrog_95	307.7	0	integrase	integration and excision
UniRef90	UHGV-1360171_33	UniRef90_UPI00106696FE	1035.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1360171_33	665956.HMPREF1032_03589	1030.0	0	N/A	N/A
Pfam	UHGV-1360171_33	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1360171_33	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1360171_33	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1360171_33	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1360171_33	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_34	phrog_5783	283.7	0	N/A	unknown function
UniRef90	UHGV-1360171_34	UniRef90_G9RRI8	450.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-1360171_34	665956.HMPREF1032_03590	450.0	0	NYN domain	N/A
Pfam	UHGV-1360171_34	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-1360171_34	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-1360171_34	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1360171_35	665956.HMPREF1032_03591	377.0	0	N/A	N/A
PHROG	UHGV-1360171_36	phrog_1914	71.4	6.2e-21	N/A	unknown function
UniRef90	UHGV-1360171_36	UniRef90_G9RRJ0	395.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1360171_36	665956.HMPREF1032_03592	395.0	0	N/A	N/A
Pfam	UHGV-1360171_36	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1360171_36	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1360171_36	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-1360171_37	UniRef90_A0A3A6JSY4	257.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1360171_37	394503.Ccel_3076	62.4	0.0000000000855	Cro/C1-type HTH DNA-binding domain	N/A
COG	UHGV-1360171_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1360171_37	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_38	phrog_66	40.4	0.000000000071	excisionase and transcriptional regulator	integration and excision
UniRef90	UHGV-1360171_38	UniRef90_G9RRJ1	130.0	2.37e-38	Excisionase family DNA binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1360171_38	1218173.BALCAV_0221205	46.6	0.00000516	Helix-turn-helix domain	N/A
Pfam	UHGV-1360171_38	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1360171_38	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
PHROG	UHGV-1360171_42	phrog_1733	70.0	2.6e-20	N/A	unknown function
UniRef90	UHGV-1360171_42	UniRef90_UPI00196846D9	810.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-1360171_42	665956.HMPREF1032_03597	893.0	0	DNA binding	N/A
COG	UHGV-1360171_42	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1360171_42	PF03677	N/A	N/A	N/A	N/A
KOfam	UHGV-1360171_44	K19171	95.8	3.2e-28	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1360171_44	phrog_77	200.2	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1360171_44	UniRef90_G9RRJ7	1188.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1360171_44	665956.HMPREF1032_03599	1188.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1360171_44	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1360171_44	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_45	phrog_2185	296.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1360171_45	UniRef90_A0A4R1QSH1	410.0	0	RecT family protein	N/A
eggNOG-mapper	UHGV-1360171_45	665956.HMPREF1032_03600	694.0	0	N/A	N/A
KOfam	UHGV-1360171_46	K06167	74.5	1.4e-21	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1360171_46	phrog_392	189.3	0	metal-dependent hydrolase	other
UniRef90	UHGV-1360171_46	UniRef90_UPI001066B38E	456.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1360171_46	665956.HMPREF1032_03601	404.0	0	Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-1360171_46	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
dbAPIS	UHGV-1360171_46	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-1360171_46	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1360171_46	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_47	phrog_36563	81.4	1.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1360171_47	665956.HMPREF1032_03602	227.0	0	N/A	N/A
UniRef90	UHGV-1360171_48	UniRef90_G9RRK1	379.0	0	N/A	N/A
Pfam	UHGV-1360171_48	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1360171_48	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-1360171_49	K01160	43.4	0.0000000000083	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1360171_49	phrog_140	125.8	2.7e-37	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1360171_49	UniRef90_A0A133ZRU5	120.0	2.81e-32	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1360171_49	665956.HMPREF1032_03604	288.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1360171_49	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1360171_49	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1360171_49	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1360171_52	phrog_38832	95.8	5.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-1360171_52	445972.ANACOL_00165	70.9	0.000000000000759	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1360171	Yes	35,940	53	92	1
UHGV-0206531	No	21,126	55	59	1
UHGV-1999444	No	18,125	54	46	1