vOTU vOTU-078728

vOTU: vOTU-078728

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-078728
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-08326 → vSUBGEN-08035 → vOTU-078728
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0032434
Biosample ID	N/A
Genome length (bp)	41,159 bps
CheckV completeness	97.42% (High-quality)
CDS count	69
CDS density	90.87%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	678	Host agreement	96.61
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0032434_2	phrog_27197	41.3	0.000000000029	N/A	unknown function
eggNOG-mapper	UHGV-0032434_2	573061.Clocel_3578	49.3	0.00000274	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0032434_2	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0032434_3	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032434_4	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032434_5	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_7	phrog_561	108.4	5.9e-32	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032434_7	UniRef90_UPI0011C8A287	149.0	1.51004e-41	recombinase RecT	N/A
eggNOG-mapper	UHGV-0032434_7	33035.JPJF01000071_gene4462	148.0	7.56981e-42	N/A	N/A
structural_annotation	UHGV-0032434_7	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0032434_8	K03111	139.2	4.30002e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0032434_8	phrog_44	145.1	3.50325e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032434_8	UniRef90_D4K451	214.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0032434_8	748224.HMPREF9436_00638	225.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0032434_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0032434_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0032434_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0032434_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0032434_8	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_9	phrog_5968	114.8	6.1e-34	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032434_9	UniRef90_A0A2V2FW01	199.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0032434_9	718252.FP2_01000	197.0	0	N/A	N/A
Pfam	UHGV-0032434_9	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
COG	UHGV-0032434_9	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0032434_9	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_16	phrog_3136	132.4	1.4e-39	N/A	unknown function
UniRef90	UHGV-0032434_16	UniRef90_UPI001C02A61B	190.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0032434_16	97139.C824_00742	72.4	0.000000000000124	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0032434_16	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0032434_16	PF04266,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0032434_17	K01160	59.7	8.4e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0032434_17	phrog_34	60.5	3.3e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032434_17	UniRef90_A0A6N7TND6	219.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0032434_17	875454.BAEW01000002_gene491	140.0	1.34006e-41	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0032434_17	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0032434_17	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0032434_17	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0032434_18	K00571	101.4	1e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0032434_18	phrog_23224	211.0	0	DNA methyltransferase	other
UniRef90	UHGV-0032434_18	UniRef90_UPI001CBBED6E	419.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0032434_18	718252.FP2_06750	377.0	0	DNA methylase	N/A
PADLOC	UHGV-0032434_18	MTase_II_00172	89.7	1.1e-27	Type II methyltransferase	RM
Pfam	UHGV-0032434_18	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0032434_18	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0032434_18	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_19	phrog_36	55.4	0.000000000000001	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0032434_19	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032434_20	UniRef90_UPI0018CC2891	119.0	2.58e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032434_20	1235790.C805_00037	111.0	5.2e-29	N/A	N/A
structural_annotation	UHGV-0032434_20	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0032434_21	K06909	140.4	1.49995e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0032434_21	phrog_10250	174.7	0	N/A	unknown function
UniRef90	UHGV-0032434_21	UniRef90_A0A844D8I4	840.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0032434_21	411490.ANACAC_00783	492.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0032434_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0032434_21	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0032434_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0032434_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0032434_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_22	phrog_64	127.4	4.7e-38	portal protein	head and packaging
UniRef90	UHGV-0032434_22	UniRef90_A0A6N7TNT3	874.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0032434_22	642492.Clole_2764	84.7	0.00000000000000984	phage portal protein, SPP1	N/A
Pfam	UHGV-0032434_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0032434_22	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_23	phrog_2468	82.3	3.3e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0032434_23	UniRef90_A0A6N7TLR7	567.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0032434_23	1256908.HMPREF0373_00484	70.1	0.000000000234	Phage Mu protein F like protein	N/A
Pfam	UHGV-0032434_23	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0032434_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032434_23	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0032434_24	K07727	87.5	2.2e-25	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0032434_24	phrog_3	43.5	0.000000000011	transcriptional repressor	transcription regulation
UniRef90	UHGV-0032434_24	UniRef90_UPI001D0E8318	112.0	2.73e-30	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0032434_24	1117108.PAALTS15_13457	87.4	1.16e-21	Transcriptional regulator	N/A
Pfam	UHGV-0032434_24	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0032434_24	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0032434_24	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032434_25	PF07342	N/A	N/A	N/A	N/A
KOfam	UHGV-0032434_27	K07741	72.2	1.4e-20	antB; anti-repressor protein	N/A
PHROG	UHGV-0032434_27	phrog_130	233.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0032434_27	UniRef90_A0A396LJD2	330.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0032434_27	663952.SDD27957_09050	253.0	0	COG3617 Prophage antirepressor	N/A
Pfam	UHGV-0032434_27	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0032434_27	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0032434_27	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0032434_27	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_28	phrog_5	45.3	0.0000000000019	tail completion or Neck1 protein	connector
UniRef90	UHGV-0032434_28	UniRef90_A0A6N7TNP6	279.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0032434_28	929506.CbC4_1219	87.0	9.76e-20	N/A	N/A
Pfam	UHGV-0032434_28	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0032434_28	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032434_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_32	phrog_544	108.9	5.1e-32	major head protein	head and packaging
UniRef90	UHGV-0032434_32	UniRef90_A0A1C6B5R0	320.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0032434_32	476272.RUMHYD_01776	283.0	0	N/A	N/A
structural_annotation	UHGV-0032434_32	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_34	phrog_17977	42.1	0.000000000011	N/A	unknown function
UniRef90	UHGV-0032434_34	UniRef90_A0A844DHJ8	126.0	4.26e-35	Phage head closure protein	N/A
structural_annotation	UHGV-0032434_34	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032434_35	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_36	phrog_885	68.2	9.2e-20	major tail protein	tail
eggNOG-mapper	UHGV-0032434_36	1111121.HMPREF1247_0789	154.0	7.00649e-45	N/A	N/A
structural_annotation	UHGV-0032434_36	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_39	phrog_28775	93.3	2e-27	tail length tape measure protein	tail
UniRef90	UHGV-0032434_39	UniRef90_A0A6N7TLD3	998.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0032434_39	1492737.FEM08_12070	137.0	8.45e-31	tape measure	N/A
Pfam	UHGV-0032434_39	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0032434_39	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0032434_39	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0032434_39	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032434_40	UniRef90_A0A417QGC1	115.0	8.73e-28	MtfA protein	N/A
eggNOG-mapper	UHGV-0032434_40	610130.Closa_0753	108.0	4.64e-26	phage tail	N/A
COG	UHGV-0032434_40	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0032434_40	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_41	phrog_3558	193.4	0	tail protein	tail
UniRef90	UHGV-0032434_41	UniRef90_UPI001C01D15B	157.0	1.9e-37	phage tail protein	N/A
Pfam	UHGV-0032434_41	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0032434_41	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0032434_41	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0032434_41	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_42	phrog_9534	42.1	0.000000000011	head protein	head and packaging
eggNOG-mapper	UHGV-0032434_42	748224.HMPREF9436_01407	169.0	0	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0032434_44	phrog_1382	49.1	0.000000000000034	N/A	unknown function
KOfam	UHGV-0032434_45	K07273	160.9	0	acm; lysozyme	N/A
PHROG	UHGV-0032434_45	phrog_291	131.6	6.6e-39	endolysin	lysis
UniRef90	UHGV-0032434_45	UniRef90_E2ZES5	332.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0032434_45	748224.HMPREF9436_00154	332.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0032434_45	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0032434_45	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0032434_45	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_47	phrog_15303	111.8	3.2e-33	N/A	unknown function
Pfam	UHGV-0032434_47	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0032434_48	K24213	53.1	0.000000000000003	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0032434_48	phrog_6320	53.6	0.0000000000000037	tail fiber protein	tail
UniRef90	UHGV-0032434_48	UniRef90_UPI0018835F0C	614.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0032434_48	411483.FAEPRAA2165_00757	173.0	0	N/A	N/A
Pfam	UHGV-0032434_48	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0032434_48	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0032434_52	K07741	47.9	0.00000000000037	antB; anti-repressor protein	N/A
PHROG	UHGV-0032434_52	phrog_63	127.2	1.4e-37	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0032434_52	UniRef90_A0A844D5R9	172.0	0	Phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0032434_52	947981.E9LUT0_9CAUD	166.0	0	DNA binding	N/A
Pfam	UHGV-0032434_52	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0032434_52	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0032434_52	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-0032434_52	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032434_54	UniRef90_UPI001A9A6BD3	52.8	0.0000000588	ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-0032434_54	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0032434_54	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032434_55	1160721.RBI_I00206	57.4	0.000000000589	N/A	N/A
structural_annotation	UHGV-0032434_55	PF19839,NF040976	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_56	phrog_3754	95.3	5.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0032434_56	1226322.HMPREF1545_00073	129.0	6.32e-37	N/A	N/A
PHROG	UHGV-0032434_57	phrog_21718	85.7	5.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0032434_57	397290.C810_05210	75.5	0.00000000000000485	N/A	N/A
PHROG	UHGV-0032434_58	phrog_22984	76.2	3.5e-22	N/A	unknown function
PHROG	UHGV-0032434_59	phrog_16490	193.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0032434_59	397290.C810_01328	142.0	7.3e-38	N/A	N/A
PHROG	UHGV-0032434_60	phrog_20016	197.7	0	N/A	unknown function
UniRef90	UHGV-0032434_60	UniRef90_A0A285PT46	207.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0032434_60	1226322.HMPREF1545_00077	178.0	0	N/A	N/A
structural_annotation	UHGV-0032434_60	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032434_61	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0032434_63	K14059	143.3	2.59941e-42	int; integrase	N/A
PHROG	UHGV-0032434_63	phrog_1	166.8	0	integrase	integration and excision
UniRef90	UHGV-0032434_63	UniRef90_A0A6N7TNQ4	731.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0032434_63	411471.SUBVAR_05137	259.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0032434_63	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0032434_63	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0032434_63	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0032434_64	UniRef90_A0A6N7TLT0	218.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0032434_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032434_64	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0032434_64	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032434_67	394503.Ccel_2974	105.0	3.71e-23	N/A	N/A
structural_annotation	UHGV-0032434_67	COG5342	N/A	N/A	N/A	N/A
PHROG	UHGV-0032434_69	phrog_8	48.6	0.00000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0032434_69	UniRef90_UPI001E54DE4F	80.1	2.22e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0032434_69	1378168.N510_01712	71.6	0.000000000000132	N/A	N/A
Pfam	UHGV-0032434_69	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0032434_69	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0032434	Yes	41,159	55	97	1
UHGV-0028199	No	28,298	55	67	1