vOTU vOTU-078936

vOTU: vOTU-078936

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-078936
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00034 → vSUBGEN-43864 → vOTU-078936
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2103192
Biosample ID	SAMEA3708736
Genome length (bp)	42,440 bps
CheckV completeness	99.90% (High-quality)
CDS count	69
CDS density	88.76%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	721	Host agreement	97.5
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	15	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-2103192_2	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_3	phrog_20016	195.9	0	N/A	unknown function
UniRef90	UHGV-2103192_3	UniRef90_A0A285PT46	209.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-2103192_3	1226322.HMPREF1545_00077	179.0	0	N/A	N/A
structural_annotation	UHGV-2103192_3	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_4	phrog_16490	143.3	1.19951e-42	N/A	unknown function
eggNOG-mapper	UHGV-2103192_4	1408437.JNJN01000043_gene803	143.0	4.27e-39	N/A	N/A
PHROG	UHGV-2103192_5	phrog_22984	80.5	1.2e-23	N/A	unknown function
PHROG	UHGV-2103192_6	phrog_21718	116.0	2.8e-34	N/A	unknown function
eggNOG-mapper	UHGV-2103192_6	397290.C810_05210	95.9	6.66e-23	N/A	N/A
PHROG	UHGV-2103192_7	phrog_3754	97.4	1.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-2103192_7	1235790.C805_00054	116.0	4.86e-32	N/A	N/A
PHROG	UHGV-2103192_8	phrog_5765	62.8	3.8e-18	N/A	unknown function
UniRef90	UHGV-2103192_8	UniRef90_UPI001D0EF465	65.1	0.000000000000634	BC1881 family protein	N/A
eggNOG-mapper	UHGV-2103192_8	748727.CLJU_c31430	59.3	0.0000000000146	N/A	N/A
NCBIFam	UHGV-2103192_8	NF033495.1	N/A	N/A	BC1881 family protein	N/A
UniRef90	UHGV-2103192_12	UniRef90_UPI0018835F0C	479.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-2103192_12	476272.RUMHYD_00002	102.0	8.08e-20	N/A	N/A
structural_annotation	UHGV-2103192_12	PF10651	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2103192_13	411483.FAEPRAA2165_00757	65.5	0.00000000000584	N/A	N/A
PHROG	UHGV-2103192_14	phrog_15303	116.4	1.3e-34	N/A	unknown function
Pfam	UHGV-2103192_14	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-2103192_16	K07273	174.6	0	acm; lysozyme	N/A
PHROG	UHGV-2103192_16	phrog_291	129.4	3.1e-38	endolysin	lysis
UniRef90	UHGV-2103192_16	UniRef90_A0A564U0D3	362.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-2103192_16	718252.FP2_04890	231.0	0	hydrolase, family 25	N/A
Pfam	UHGV-2103192_16	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-2103192_16	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-2103192_16	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_17	phrog_1382	53.4	0.000000000000002	N/A	unknown function
eggNOG-mapper	UHGV-2103192_17	33035.JPJF01000043_gene998	47.8	0.00000073	N/A	N/A
eggNOG-mapper	UHGV-2103192_19	748224.HMPREF9436_01407	202.0	0	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-2103192_20	phrog_3558	203.5	0	tail protein	tail
UniRef90	UHGV-2103192_20	UniRef90_R9C6X0	61.6	0.00000236	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-2103192_20	610130.Closa_0754	68.9	0.00000000225	N/A	N/A
Pfam	UHGV-2103192_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-2103192_20	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2103192_20	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-2103192_21	UniRef90_A0A417QGC1	117.0	1.6e-28	MtfA protein	N/A
eggNOG-mapper	UHGV-2103192_21	411490.ANACAC_00709	104.0	2.78e-24	phage tail	N/A
COG	UHGV-2103192_21	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2103192_21	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_22	phrog_28775	137.0	1.3e-40	tail length tape measure protein	tail
UniRef90	UHGV-2103192_22	UniRef90_A0A6N7TLD3	1420.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-2103192_22	662755.CRES_0873	129.0	1.58e-27	phage tail tape measure protein	N/A
Pfam	UHGV-2103192_22	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-2103192_22	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-2103192_22	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2103192_22	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_25	phrog_885	71.5	1e-20	major tail protein	tail
eggNOG-mapper	UHGV-2103192_25	1111121.HMPREF1247_0789	152.0	5.60519e-44	N/A	N/A
structural_annotation	UHGV-2103192_25	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103192_26	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_27	phrog_17977	40.8	0.00000000003	N/A	unknown function
UniRef90	UHGV-2103192_27	UniRef90_A0A844DHJ8	119.0	3.28e-32	Phage head closure protein	N/A
structural_annotation	UHGV-2103192_27	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_29	phrog_544	146.2	2.10195e-43	major head protein	head and packaging
UniRef90	UHGV-2103192_29	UniRef90_R0BKA1	431.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2103192_29	476272.RUMHYD_01776	327.0	0	N/A	N/A
structural_annotation	UHGV-2103192_29	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_32	phrog_5	51.7	0.000000000000023	tail completion or Neck1 protein	connector
UniRef90	UHGV-2103192_32	UniRef90_A0A6N7TNP6	290.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2103192_32	1123309.AQYB01000018_gene814	94.0	1.41e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-2103192_32	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-2103192_32	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_34	phrog_2468	81.0	1.1e-23	head morphogenesis	head and packaging
UniRef90	UHGV-2103192_34	UniRef90_A0A6N7TLR7	622.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-2103192_34	1504822.CCNO01000013_gene286	114.0	2.88e-25	cell adhesion	N/A
Pfam	UHGV-2103192_34	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-2103192_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103192_34	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_35	phrog_64	120.9	4.7e-36	portal protein	head and packaging
UniRef90	UHGV-2103192_35	UniRef90_A0A6N7TNT3	875.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2103192_35	1042156.CXIVA_01850	82.8	0.0000000000000442	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-2103192_35	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2103192_35	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-2103192_36	K06909	143.5	1.99965e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2103192_36	phrog_10250	175.1	0	N/A	unknown function
UniRef90	UHGV-2103192_36	UniRef90_A0A844D8I4	846.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2103192_36	411490.ANACAC_00783	489.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2103192_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-2103192_36	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2103192_36	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2103192_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2103192_36	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-2103192_37	UniRef90_UPI0018CC2891	115.0	4.33e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2103192_37	1235790.C805_00037	107.0	1.24e-27	N/A	N/A
structural_annotation	UHGV-2103192_37	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_38	phrog_36	68.9	8.9e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-2103192_38	UniRef90_A0A6N7TNN9	275.0	0	N/A	N/A
eggNOG-mapper	UHGV-2103192_38	748224.HMPREF9436_01463	80.1	4.03e-17	N/A	N/A
Pfam	UHGV-2103192_38	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-2103192_38	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
COG	UHGV-2103192_39	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-2103192_40	K01160	60.0	7.2e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2103192_40	phrog_34	58.9	1.1e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2103192_40	UniRef90_A0A6N7TND6	216.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2103192_40	875454.BAEW01000002_gene491	135.0	2.37e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2103192_40	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2103192_40	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2103192_40	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_41	phrog_424	91.9	6.5e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-2103192_41	445972.ANACOL_01819	436.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-2103192_41	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-2103192_41	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103192_43	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-2103192_44	K02086	63.4	2.8e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-2103192_44	phrog_186	73.0	5e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2103192_44	UniRef90_A0A6N7TLH4	433.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-2103192_44	877411.JMMA01000002_gene2052	64.3	0.00000000325	N/A	N/A
Pfam	UHGV-2103192_44	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-2103192_44	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-2103192_44	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-2103192_44	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
UniRef90	UHGV-2103192_45	UniRef90_UPI001CBB85F6	109.0	7.48e-27	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2103192_45	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_46	phrog_2760	182.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2103192_46	UniRef90_A0A3A6EAW6	532.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-2103192_46	1235794.C811_01355	157.0	1.44334e-43	RecT family	N/A
Pfam	UHGV-2103192_46	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-2103192_46	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-2103192_46	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-2103192_46	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_47	phrog_674	141.5	6.39973e-42	N/A	unknown function
UniRef90	UHGV-2103192_47	UniRef90_A0A3A6E846	529.0	0	N/A	N/A
eggNOG-mapper	UHGV-2103192_47	556268.OFAG_00840	88.2	2.07e-17	N/A	N/A
Pfam	UHGV-2103192_47	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-2103192_47	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103192_48	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103192_51	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103192_52	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2103192_53	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2103192_56	1121865.OMW_01950	75.1	7.98e-17	N/A	N/A
structural_annotation	UHGV-2103192_56	PF17516,NF007197	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2103192_57	760568.Desku_0919	96.7	5.19e-22	N/A	N/A
structural_annotation	UHGV-2103192_57	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_60	phrog_32852	49.9	0.000000000000046	N/A	unknown function
structural_annotation	UHGV-2103192_61	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-2103192_63	K22300	50.0	0.000000000000064	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2103192_63	phrog_2967	46.7	0.00000000000053	transcriptional regulator	transcription regulation
UniRef90	UHGV-2103192_63	UniRef90_A0A844DFR0	169.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2103192_63	748224.HMPREF9436_01444	140.0	5.38995e-41	N/A	N/A
Pfam	UHGV-2103192_63	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2103192_63	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2103192_63	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2103192_65	phrog_888	64.3	3.1e-35	N/A	unknown function
UniRef90	UHGV-2103192_65	UniRef90_A0A6N7TMA2	437.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-2103192_65	1415774.U728_165	85.1	5.86e-17	Short C-terminal domain	N/A
Pfam	UHGV-2103192_65	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-2103192_65	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-2103192_65	PF15947,PF14471	N/A	N/A	N/A	N/A
UniRef90	UHGV-2103192_67	UniRef90_A0A6N7TLT0	338.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-2103192_67	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2103192_67	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2103192_67	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2103192_68	K14059	146.8	2.70451e-43	int; integrase	N/A
PHROG	UHGV-2103192_68	phrog_1	170.2	0	integrase	integration and excision
UniRef90	UHGV-2103192_68	UniRef90_A0A174D176	400.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-2103192_68	411471.SUBVAR_05137	247.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2103192_68	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2103192_68	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-2103192_68	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-2103192_69	K02528	305.0	0	ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]	N/A
UniRef90	UHGV-2103192_69	UniRef90_C7H504	525.0	0	Ribosomal RNA small subunit methyltransferase A	N/A
eggNOG-mapper	UHGV-2103192_69	748224.HMPREF9436_02403	533.0	0	Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	N/A
Pfam	UHGV-2103192_69	PF00398	N/A	N/A	Ribosomal RNA adenine dimethylase	RrnaAD
NCBIFam	UHGV-2103192_69	TIGR00755.1	N/A	N/A	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	N/A
COG	UHGV-2103192_69	COG0030	N/A	N/A	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	N/A
HAMAP	UHGV-2103192_69	MF_00607	N/A	N/A	Ribosomal RNA small subunit methyltransferase A [rsmA]	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2103192	Yes	42,440	55	100	1
UHGV-0108002	No	41,220	55	97	1