vOTU vOTU-079070

vOTU: vOTU-079070

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-079070
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00034 → vSUBGEN-15420 → vOTU-079070
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0040757
Biosample ID	SAMEA4969165
Genome length (bp)	38,186 bps
CheckV completeness	90.25% (High-quality)
CDS count	64
CDS density	91.67%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	725	Host agreement	96.28
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium sp905215595	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 90.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0040757_1	UniRef90_A0A6N7TLT0	222.0	0	Helix-turn-helix domain-containing protein	N/A
KOfam	UHGV-0040757_2	K14059	139.0	5.79997e-41	int; integrase	N/A
PHROG	UHGV-0040757_2	phrog_1	164.0	0	integrase	integration and excision
UniRef90	UHGV-0040757_2	UniRef90_A0A6N7TNQ4	740.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0040757_2	411471.SUBVAR_05137	264.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0040757_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0040757_2	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0040757_2	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040757_4	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_5	phrog_20016	195.4	0	N/A	unknown function
UniRef90	UHGV-0040757_5	UniRef90_A0A285PT46	208.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0040757_5	1226322.HMPREF1545_00077	178.0	0	N/A	N/A
structural_annotation	UHGV-0040757_5	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_6	phrog_16490	147.6	6.72623e-44	N/A	unknown function
eggNOG-mapper	UHGV-0040757_6	1408437.JNJN01000043_gene803	143.0	4.27e-39	N/A	N/A
PHROG	UHGV-0040757_7	phrog_22984	77.1	1.2e-22	N/A	unknown function
PHROG	UHGV-0040757_8	phrog_21718	124.4	7e-37	N/A	unknown function
eggNOG-mapper	UHGV-0040757_8	397290.C810_05210	104.0	2.36e-26	N/A	N/A
PHROG	UHGV-0040757_9	phrog_3754	99.8	2.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-0040757_9	1235790.C805_00054	115.0	1.39e-31	N/A	N/A
COG	UHGV-0040757_11	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0040757_11	PF13560,NF040522	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040757_16	UniRef90_UPI0018835F0C	521.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0040757_16	411483.FAEPRAA2165_00757	175.0	0	N/A	N/A
structural_annotation	UHGV-0040757_16	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_17	phrog_15303	115.1	3.3e-34	N/A	unknown function
Pfam	UHGV-0040757_17	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0040757_19	K07273	166.9	0	acm; lysozyme	N/A
PHROG	UHGV-0040757_19	phrog_291	140.3	1.6e-41	endolysin	lysis
UniRef90	UHGV-0040757_19	UniRef90_E2ZES5	332.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0040757_19	748224.HMPREF9436_00154	332.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0040757_19	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0040757_19	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0040757_19	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_20	phrog_918	99.6	1.5e-29	N/A	unknown function
UniRef90	UHGV-0040757_20	UniRef90_UPI000EC62F11	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-0040757_20	1256908.HMPREF0373_00480	138.0	9.02997e-42	N/A	N/A
Pfam	UHGV-0040757_20	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0040757_20	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_21	phrog_1382	49.4	0.000000000000036	N/A	unknown function
eggNOG-mapper	UHGV-0040757_21	411468.CLOSCI_00272	46.2	0.00000328	N/A	N/A
PHROG	UHGV-0040757_23	phrog_9534	52.6	0.0000000000000066	head protein	head and packaging
eggNOG-mapper	UHGV-0040757_23	748224.HMPREF9436_00405	222.0	0	domain, Protein	N/A
COG	UHGV-0040757_23	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_24	phrog_3558	205.0	0	tail protein	tail
UniRef90	UHGV-0040757_24	UniRef90_UPI001C01D15B	164.0	9.18e-40	phage tail protein	N/A
eggNOG-mapper	UHGV-0040757_24	1120978.KB894081_gene120	71.6	0.000000000334	Prophage endopeptidase tail	N/A
Pfam	UHGV-0040757_24	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0040757_24	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0040757_24	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040757_25	UniRef90_A0A417QGC1	116.0	3.15e-28	MtfA protein	N/A
eggNOG-mapper	UHGV-0040757_25	411490.ANACAC_00709	103.0	5.45e-24	phage tail	N/A
COG	UHGV-0040757_25	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0040757_25	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_26	phrog_9959	100.9	7.6e-30	tail length tape measure protein	tail
UniRef90	UHGV-0040757_26	UniRef90_A0A6N7TLD3	1207.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0040757_26	411470.RUMGNA_02228	129.0	4.16e-28	tape measure	N/A
Pfam	UHGV-0040757_26	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0040757_26	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0040757_26	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0040757_26	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_29	phrog_885	69.4	4.4e-20	major tail protein	tail
eggNOG-mapper	UHGV-0040757_29	1111121.HMPREF1247_0789	155.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-0040757_29	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040757_30	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_31	phrog_17977	41.5	0.000000000019	N/A	unknown function
UniRef90	UHGV-0040757_31	UniRef90_A0A844DHJ8	119.0	3.28e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0040757_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_33	phrog_247	204.7	0	major head protein	head and packaging
UniRef90	UHGV-0040757_33	UniRef90_UPI001BA5448B	240.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0040757_33	33035.JPJF01000106_gene3132	361.0	0	N/A	N/A
Pfam	UHGV-0040757_33	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-0040757_33	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040757_34	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_35	phrog_478	126.8	9.3e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0040757_35	UniRef90_A0A373Q857	165.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0040757_35	1111121.HMPREF1247_0834	98.6	9.79e-25	N/A	N/A
PHROG	UHGV-0040757_36	phrog_5	50.5	0.000000000000054	tail completion or Neck1 protein	connector
UniRef90	UHGV-0040757_36	UniRef90_A0A6N7TNP6	298.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0040757_36	1123309.AQYB01000018_gene814	92.4	6e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0040757_36	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0040757_36	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0040757_36	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_40	phrog_2468	81.6	7.1e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0040757_40	UniRef90_A0A6N7TLR7	639.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0040757_40	1504822.CCNO01000013_gene286	111.0	4.19e-24	cell adhesion	N/A
Pfam	UHGV-0040757_40	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0040757_40	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040757_40	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_41	phrog_64	120.2	7.8e-36	portal protein	head and packaging
UniRef90	UHGV-0040757_41	UniRef90_A0A6N7TNT3	880.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0040757_41	642492.Clole_2764	80.9	0.000000000000174	phage portal protein, SPP1	N/A
Pfam	UHGV-0040757_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0040757_41	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0040757_42	K06909	141.6	7.40026e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0040757_42	phrog_10250	178.3	0	N/A	unknown function
UniRef90	UHGV-0040757_42	UniRef90_A0A844D8I4	837.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0040757_42	411490.ANACAC_00783	487.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0040757_42	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0040757_42	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0040757_42	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0040757_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0040757_42	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040757_43	UniRef90_UPI0018CC2891	112.0	1.34e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0040757_43	1226322.HMPREF1545_00042	108.0	6.86e-28	N/A	N/A
structural_annotation	UHGV-0040757_43	PF04218	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040757_44	UniRef90_A0A6N7TNN9	70.9	0.00000000000165	N/A	N/A
structural_annotation	UHGV-0040757_44	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-0040757_46	K01160	60.7	4.6e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0040757_46	phrog_34	58.8	1.2e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040757_46	UniRef90_A0A6N7TND6	217.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0040757_46	875454.BAEW01000002_gene491	138.0	1.62e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0040757_46	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0040757_46	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0040757_46	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_47	phrog_14697	50.0	0.000000000000039	N/A	unknown function
eggNOG-mapper	UHGV-0040757_47	665950.HMPREF1025_01969	68.6	0.0000000000482	COG NOG28949 non supervised orthologous group	N/A
COG	UHGV-0040757_47	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
PHROG	UHGV-0040757_49	phrog_757	124.1	8.7e-37	DNA methyltransferase	other
UniRef90	UHGV-0040757_49	UniRef90_A0A417JTT5	225.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0040757_49	1095750.HMPREF9970_0173	162.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0040757_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0040757_50	phrog_757	51.3	0.000000000000018	DNA methyltransferase	other
UniRef90	UHGV-0040757_50	UniRef90_A0A7J2R6L5	68.6	0.0000000000000306	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0040757_50	748224.HMPREF9436_03069	105.0	8.66e-28	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0040757_50	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0040757_52	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0040757_53	K02086	60.9	2.2e-17	dnaD; DNA replication protein	N/A
PHROG	UHGV-0040757_53	phrog_186	75.0	9.9e-22	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040757_53	UniRef90_A0A844D5V0	220.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0040757_53	748224.HMPREF9436_03357	65.1	0.00000000125	N/A	N/A
Pfam	UHGV-0040757_53	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0040757_53	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0040757_53	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0040757_53	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040757_54	UniRef90_UPI001CBB85F6	110.0	3.02e-27	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0040757_54	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_55	phrog_2760	187.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040757_55	UniRef90_A0A3A6EAW6	519.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0040757_55	1235794.C811_01355	157.0	2.0459e-43	RecT family	N/A
Pfam	UHGV-0040757_55	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0040757_55	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0040757_55	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0040757_55	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0040757_56	phrog_674	153.5	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0040757_56	UniRef90_A0A3A6E846	499.0	0	N/A	N/A
eggNOG-mapper	UHGV-0040757_56	556268.OFAG_00840	84.0	6.98e-16	N/A	N/A
Pfam	UHGV-0040757_56	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0040757_56	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040757_57	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040757_58	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040757_59	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040757_60	PF10743,NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0040757_62	K17343	53.6	0.0000000000000023	PRPH2, TSPAN22; peripherin-2	N/A
PHROG	UHGV-0040757_62	phrog_4433	189.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0040757_62	573061.Clocel_3578	101.0	2.31e-21	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0040757_62	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0040757_62	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0040757_62	NF007410	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0040757	Yes	38,186	55	90	1